BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0045.0032.p (247 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAG60752.1|AF322012_57 ID117 [Bradyrhizobium japonicum] 432 e-119 ref|YP_001237108.1| hypothetical protein BBta_0946 [Bradyrhizobi... 370 e-100 ref|YP_001208411.1| putative outer membrane protein [Bradyrhizob... 362 3e-98 ref|NP_768406.1| outer membrane protein [Bradyrhizobium japonicu... 359 2e-97 ref|NP_767951.1| outer membrane protein [Bradyrhizobium japonicu... 296 2e-78 >gb|AAG60752.1|AF322012_57 ID117 [Bradyrhizobium japonicum] Length = 247 Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust. Identities = 208/247 (84%), Positives = 224/247 (90%) Query: 1 MENSMRIKAILTTTSLLALASSLASMSVQAADLAQAPIYYKAPPIEPFNPWMIRLRVLGV 60 MENSMR + +L T S+ ALA+SLAS SV ADL AP+YYKAPPIEP NPWMIRLRVLGV Sbjct: 1 MENSMRARTVLATVSVFALATSLASNSVHGADLGPAPVYYKAPPIEPRNPWMIRLRVLGV 60 Query: 61 LPDTAGSSVNVAGASPLSSPASGLSISDQAVPELDITYFFTRNVAAELILGVSRHHISGT 120 LPDTAGSSVNV G LSSP SGLSISDQA+PELDITYFFT N+AAELILGV+ HH+SG Sbjct: 61 LPDTAGSSVNVPGTPLLSSPNSGLSISDQAIPELDITYFFTANLAAELILGVTSHHVSGN 120 Query: 121 GKLNGLDIGKAWLLPPTLTLQYHFTDFGPLKPYIGAGINYTVFFNQSAANTSLAGLAVTD 180 G L GLDIGKAWLLPPTLTLQYHFTDFGPLKPY+GAGINYTVFFNQSAANTSLAGL+VTD Sbjct: 121 GALTGLDIGKAWLLPPTLTLQYHFTDFGPLKPYVGAGINYTVFFNQSAANTSLAGLSVTD 180 Query: 181 LHIANQFGAAVQFGFDYMLDRHWGLNFDVKKLWLRPDYSATVNNAIAVTGRANIDPWLVS 240 L+I NQFGAAVQFGFDYMLDRHWGLNFDVKKLWLRP+YSAT+NNAIAVTGRA+IDPWLVS Sbjct: 181 LNIKNQFGAAVQFGFDYMLDRHWGLNFDVKKLWLRPEYSATLNNAIAVTGRAHIDPWLVS 240 Query: 241 GGITYKF 247 GG+ YKF Sbjct: 241 GGVAYKF 247 >ref|YP_001237108.1| hypothetical protein BBta_0946 [Bradyrhizobium sp. BTAi1] gb|ABQ33202.1| putative outer membrane protein precursor of unknown function [Bradyrhizobium sp. BTAi1] Length = 243 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 176/236 (74%), Positives = 202/236 (85%), Gaps = 1/236 (0%) Query: 13 TTSLLALASSLASM-SVQAADLAQAPIYYKAPPIEPFNPWMIRLRVLGVLPDTAGSSVNV 71 ++SLL LA+ +M S QAADL AP+Y KAP +E +NPWMIR+R LGVLPD GS+VNV Sbjct: 8 SSSLLVLAAVCGAMGSAQAADLQAAPVYTKAPVVEAWNPWMIRVRALGVLPDAGGSTVNV 67 Query: 72 AGASPLSSPASGLSISDQAVPELDITYFFTRNVAAELILGVSRHHISGTGKLNGLDIGKA 131 G LSSP SGL IS+Q VPELDI+YFFT+N+AAELILGV+RH ISGTG L+GL+IGKA Sbjct: 68 TGVPALSSPNSGLKISNQVVPELDISYFFTKNIAAELILGVTRHSISGTGTLDGLNIGKA 127 Query: 132 WLLPPTLTLQYHFTDFGPLKPYIGAGINYTVFFNQSAANTSLAGLAVTDLHIANQFGAAV 191 WLLPPTLTLQYHFTDFG KPYIGAG+NYTVFFNQSA+N GLAVT+LHI+NQ+GAAV Sbjct: 128 WLLPPTLTLQYHFTDFGAFKPYIGAGVNYTVFFNQSASNQVFNGLAVTNLHISNQWGAAV 187 Query: 192 QFGFDYMLDRHWGLNFDVKKLWLRPDYSATVNNAIAVTGRANIDPWLVSGGITYKF 247 QFGFDYMLD+HWGLN DVKKLWL+P+YSATVN AI +TGRANIDPWLV G+TYKF Sbjct: 188 QFGFDYMLDKHWGLNVDVKKLWLQPNYSATVNGAIPITGRANIDPWLVGAGVTYKF 243 >ref|YP_001208411.1| putative outer membrane protein [Bradyrhizobium sp. ORS 278] emb|CAL80196.1| conserved hypothetical protein; putative signal peptide; Putative outer membrane protein precursor [Bradyrhizobium sp. ORS 278] Length = 243 Score = 362 bits (928), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 174/236 (73%), Positives = 199/236 (84%), Gaps = 1/236 (0%) Query: 13 TTSLLALASSLASM-SVQAADLAQAPIYYKAPPIEPFNPWMIRLRVLGVLPDTAGSSVNV 71 ++SLL LA+ +M S QAADL AP+ KAP IE +NPWMIR+R LGVLPD GS++NV Sbjct: 8 SSSLLVLAAICGAMGSAQAADLEAAPVITKAPVIEAWNPWMIRVRALGVLPDAGGSTLNV 67 Query: 72 AGASPLSSPASGLSISDQAVPELDITYFFTRNVAAELILGVSRHHISGTGKLNGLDIGKA 131 G LSSP S L IS+Q VPELDI+YFFTRN+AAELILGV+RH ISGTG L+GL+IGKA Sbjct: 68 TGVPALSSPNSSLKISNQVVPELDISYFFTRNIAAELILGVTRHSISGTGALDGLNIGKA 127 Query: 132 WLLPPTLTLQYHFTDFGPLKPYIGAGINYTVFFNQSAANTSLAGLAVTDLHIANQFGAAV 191 WLLPPTLTLQYHFTDFG KPY+GAG+NYTVFFNQSAAN + GLAVT+L I+NQ+GAAV Sbjct: 128 WLLPPTLTLQYHFTDFGAFKPYVGAGVNYTVFFNQSAANQVVNGLAVTNLKISNQWGAAV 187 Query: 192 QFGFDYMLDRHWGLNFDVKKLWLRPDYSATVNNAIAVTGRANIDPWLVSGGITYKF 247 QFGFDYMLD+HWGLN DVKKLWL+P+YSATVN I VTGRANIDPWLV G+TYKF Sbjct: 188 QFGFDYMLDKHWGLNVDVKKLWLQPNYSATVNGVIPVTGRANIDPWLVGAGVTYKF 243 >ref|NP_768406.1| outer membrane protein [Bradyrhizobium japonicum USDA 110] dbj|BAC47031.1| outer membrane protein [Bradyrhizobium japonicum USDA 110] Length = 196 Score = 359 bits (921), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 173/196 (88%), Positives = 184/196 (93%) Query: 52 MIRLRVLGVLPDTAGSSVNVAGASPLSSPASGLSISDQAVPELDITYFFTRNVAAELILG 111 MIRLRVLGVLPDTAGSSVNV G LSSP SGLSISDQA+PELDITYFFT N+AAELILG Sbjct: 1 MIRLRVLGVLPDTAGSSVNVPGTPLLSSPNSGLSISDQAIPELDITYFFTANLAAELILG 60 Query: 112 VSRHHISGTGKLNGLDIGKAWLLPPTLTLQYHFTDFGPLKPYIGAGINYTVFFNQSAANT 171 V+ HH+SG G L GLDIGKAWLLPPTLTLQYHFTDFGPLKPY+GAGINYTVFFNQSAANT Sbjct: 61 VTSHHVSGNGALTGLDIGKAWLLPPTLTLQYHFTDFGPLKPYVGAGINYTVFFNQSAANT 120 Query: 172 SLAGLAVTDLHIANQFGAAVQFGFDYMLDRHWGLNFDVKKLWLRPDYSATVNNAIAVTGR 231 SLAGL+VTDL+I NQFGAAVQFGFDYMLDRHWGLNFDVKKLWLRP+YSAT+NNAIAVTGR Sbjct: 121 SLAGLSVTDLNIKNQFGAAVQFGFDYMLDRHWGLNFDVKKLWLRPEYSATLNNAIAVTGR 180 Query: 232 ANIDPWLVSGGITYKF 247 A+IDPWLVSGG+ YKF Sbjct: 181 AHIDPWLVSGGVAYKF 196 >ref|NP_767951.1| outer membrane protein [Bradyrhizobium japonicum USDA 110] dbj|BAC46576.1| outer membrane protein [Bradyrhizobium japonicum USDA 110] Length = 258 Score = 296 bits (758), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 171/260 (65%), Positives = 194/260 (74%), Gaps = 18/260 (6%) Query: 2 ENSMRIKAILTTTSLLALASSLASM------SVQAADLAQAPIYYKAPP-IEPFNPWMIR 54 E ++ + TT LA + + +M S QAADL P+Y KAPP +E FNPWM+R Sbjct: 3 ERRLKGIEMQRTTRHLARIAMVGAMLAGTFASAQAADL---PVYKKAPPPVEAFNPWMVR 59 Query: 55 LRVLGVLPDTAGSSVNVAGASPLSSPASGLSISDQAVPELDITYFFTRNVAAELILGVSR 114 LRVLGVLPD GS+VNVAG LSSP SGLSISDQ VPELDI+YFFTRN+AAELILGV+R Sbjct: 60 LRVLGVLPDAGGSTVNVAGVPSLSSPNSGLSISDQVVPELDISYFFTRNIAAELILGVTR 119 Query: 115 HHISGTGKLNGLDIGKAWLLPPTLTLQYHFTDFGPLKPYIGAGINYTVFFNQSAANTSLA 174 H ISGTG L L IGK LLPPTLTLQYHF +FG KPYIGAG+NYTVFFN SAAN A Sbjct: 120 HSISGTGSLANLPIGKTTLLPPTLTLQYHFDNFGAFKPYIGAGVNYTVFFNNSAANAPAA 179 Query: 175 GLA-------VTDLHIANQFGAAVQFGFDYMLDRHWGLNFDVKKLWLRPDYSATVNNAIA 227 + T LH++N +G AVQFGFDYMLDRHWGLN DVKKLWLRPDYSATV + + Sbjct: 180 IVGPPAIVATTTSLHVSNAWGGAVQFGFDYMLDRHWGLNVDVKKLWLRPDYSATV-SGLP 238 Query: 228 VTGRANIDPWLVSGGITYKF 247 VTG A+IDPWLV GG+TYKF Sbjct: 239 VTGNAHIDPWLVGGGVTYKF 258