BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0045.0020.p         (74 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_768397.1| nitrogen fixation protein [Bradyrhizobium japon...   134   6e-30
ref|YP_001207316.1| fixU nitrogen fixation protein [Bradyrhizobi...   129   2e-28
ref|YP_001241754.1| fixU nitrogen fixation protein [Bradyrhizobi...   125   2e-27
ref|YP_004677444.1| Protein fixU [Hyphomicrobium sp. MC1] >gi|33...   122   2e-26
ref|YP_001415025.1| NifT/FixU family protein [Xanthobacter autot...   122   2e-26

>ref|NP_768397.1| nitrogen fixation protein [Bradyrhizobium japonicum USDA 110]
 gb|AAG60743.1|AF322012_48 FixU [Bradyrhizobium japonicum]
 dbj|BAC47022.1| nitrogen fixation protein [Bradyrhizobium japonicum USDA 110]
          Length = 74

 Score =  134 bits (336), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 62/74 (83%), Positives = 72/74 (97%)

Query: 1  VKIMIRRAPDSGLSIYVPKKDLEESIVESEHETLWGGWIKIANGWVLDLPQMASDTRLPV 60
          +KIMIRR+PD+GLSIYVPKKD+EESIV SE+ETLWGGWIK+ANGWVLDLP+MASDTRLP+
Sbjct: 1  MKIMIRRSPDTGLSIYVPKKDIEESIVASEYETLWGGWIKVANGWVLDLPEMASDTRLPI 60

Query: 61 TINAKKRGENGDDP 74
          TI+AKKR E+GDDP
Sbjct: 61 TIDAKKRDESGDDP 74


>ref|YP_001207316.1| fixU nitrogen fixation protein [Bradyrhizobium sp. ORS 278]
 emb|CAL79099.1| fixU nitrogen fixation protein [Bradyrhizobium sp. ORS 278]
          Length = 73

 Score =  129 bits (323), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 58/73 (79%), Positives = 70/73 (95%)

Query: 1  VKIMIRRAPDSGLSIYVPKKDLEESIVESEHETLWGGWIKIANGWVLDLPQMASDTRLPV 60
          +K+MIRR+P++GLSIYVPKKDLEE IVE+EHETLWGGWI+IANGWVL+LPQMA+DTRLP+
Sbjct: 1  MKVMIRRSPETGLSIYVPKKDLEEPIVETEHETLWGGWIRIANGWVLELPQMAADTRLPI 60

Query: 61 TINAKKRGENGDD 73
          TINA+KRG  GD+
Sbjct: 61 TINARKRGGEGDE 73


>ref|YP_001241754.1| fixU nitrogen fixation protein [Bradyrhizobium sp. BTAi1]
 gb|ABQ37848.1| fixU nitrogen fixation protein [Bradyrhizobium sp. BTAi1]
          Length = 70

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/70 (81%), Positives = 67/70 (95%)

Query: 4  MIRRAPDSGLSIYVPKKDLEESIVESEHETLWGGWIKIANGWVLDLPQMASDTRLPVTIN 63
          MIRR+P++GLSIYVPKKDLEE IVE+EHETLWGGWI+IANGWVL+LPQMA+DTRLP+TIN
Sbjct: 1  MIRRSPETGLSIYVPKKDLEEPIVETEHETLWGGWIRIANGWVLELPQMAADTRLPITIN 60

Query: 64 AKKRGENGDD 73
          A+KRG  GD+
Sbjct: 61 ARKRGGEGDE 70


>ref|YP_004677444.1| Protein fixU [Hyphomicrobium sp. MC1]
 emb|CCB66878.1| Protein fixU homolog [Hyphomicrobium sp. MC1]
          Length = 71

 Score =  122 bits (306), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 55/69 (79%), Positives = 67/69 (97%)

Query: 1  VKIMIRRAPDSGLSIYVPKKDLEESIVESEHETLWGGWIKIANGWVLDLPQMASDTRLPV 60
          +K+MIRR+P++GLSIYVPKKDLEE IVES+HETLWGGWI+IANGWVLDLP++A+DT LP+
Sbjct: 1  MKVMIRRSPETGLSIYVPKKDLEEPIVESQHETLWGGWIRIANGWVLDLPELAADTPLPI 60

Query: 61 TINAKKRGE 69
          TINA+KRGE
Sbjct: 61 TINARKRGE 69


>ref|YP_001415025.1| NifT/FixU family protein [Xanthobacter autotrophicus Py2]
 gb|ABS65368.1| NifT/FixU family protein [Xanthobacter autotrophicus Py2]
          Length = 71

 Score =  122 bits (305), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 57/69 (82%), Positives = 64/69 (92%)

Query: 1  VKIMIRRAPDSGLSIYVPKKDLEESIVESEHETLWGGWIKIANGWVLDLPQMASDTRLPV 60
          +KIMIRR+P+ GLSIYVPKKDLEE IVE+EHETLWGGWIKIANGWVLDLP+MA  T LP+
Sbjct: 1  MKIMIRRSPEMGLSIYVPKKDLEEPIVETEHETLWGGWIKIANGWVLDLPEMAEGTTLPI 60

Query: 61 TINAKKRGE 69
          T+NAKKRGE
Sbjct: 61 TVNAKKRGE 69