BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0045.0013.p         (101 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_768390.1| ferredoxin [Bradyrhizobium japonicum USDA 110] ...   167   6e-40
ref|YP_001523950.1| ferredoxin [Azorhizobium caulinodans ORS 571...   132   1e-29
ref|YP_001415012.1| ferredoxin III 4(4Fe-4S) nif-specific [Xanth...   131   3e-29
ref|ZP_08870635.1| ferredoxin [Azospirillum amazonense Y2] >gi|3...   128   2e-28
ref|YP_001241764.1| ferredoxin-3 [Bradyrhizobium sp. BTAi1] >gi|...   127   5e-28

>ref|NP_768390.1| ferredoxin [Bradyrhizobium japonicum USDA 110]
 gb|AAG60736.1|AF322012_41 Fer3 [Bradyrhizobium japonicum]
 dbj|BAC47015.1| ferredoxin [Bradyrhizobium japonicum USDA 110]
          Length = 97

 Score =  167 bits (422), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 82/98 (83%), Positives = 86/98 (87%), Gaps = 2/98 (2%)

Query: 1  MSFATRDGRDWTPDYLISIDANKCIGCGRCFKVCGRDVMTLRGINESGELVDLDNDDDDD 60
          MSFATRDGRDW P YL SIDA KCIGCGRCFKVCG+DVMTL+GINE GELV+LDN  D D
Sbjct: 1  MSFATRDGRDWMPQYLASIDAKKCIGCGRCFKVCGQDVMTLKGINEEGELVNLDN--DAD 58

Query: 61 DEIEKKIMVLNDQGACIGCGACARVCPASCQTHGSAAT 98
          DE+EKKIMVLNDQGACIGCGAC RVCPASCQTH  AA 
Sbjct: 59 DEVEKKIMVLNDQGACIGCGACDRVCPASCQTHVPAAA 96


>ref|YP_001523950.1| ferredoxin [Azorhizobium caulinodans ORS 571]
 dbj|BAF87032.1| ferredoxin [Azorhizobium caulinodans ORS 571]
          Length = 98

 Score =  132 bits (333), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 67/100 (67%), Positives = 83/100 (83%), Gaps = 2/100 (2%)

Query: 1   MSFATRDGRDWTPDYLISIDANKCIGCGRCFKVCGRDVMTLRGINESGELVDLDNDDDDD 60
           MS +TRDGR W P+YL++ID  KCIGCGRC+KVCGR+VMTL+GI + GE+V LD+D+DD+
Sbjct: 1   MSQSTRDGRAWEPEYLVAIDDRKCIGCGRCYKVCGREVMTLKGITDEGEIVSLDDDEDDE 60

Query: 61  DEIEKKIMVLNDQGACIGCGACARVCPASCQTHGSAATEA 100
             +EKKIMV+ D GACIGCGACARVCP +CQTH  A+  A
Sbjct: 61  --VEKKIMVMADTGACIGCGACARVCPTNCQTHVPASQAA 98


>ref|YP_001415012.1| ferredoxin III 4(4Fe-4S) nif-specific [Xanthobacter autotrophicus
           Py2]
 gb|ABS65355.1| Ferredoxin III 4(4Fe-4S) nif-specific [Xanthobacter autotrophicus
           Py2]
          Length = 98

 Score =  131 bits (330), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 74/100 (74%), Positives = 84/100 (84%), Gaps = 2/100 (2%)

Query: 1   MSFATRDGRDWTPDYLISIDANKCIGCGRCFKVCGRDVMTLRGINESGELVDLDNDDDDD 60
           MS  TRDGR W PDYL+ IDA+KCIGCGRCFKVCGRDVMTL+GINE GE+V LD+  D+D
Sbjct: 1   MSNETRDGRAWQPDYLLDIDADKCIGCGRCFKVCGRDVMTLKGINEDGEVVSLDD--DED 58

Query: 61  DEIEKKIMVLNDQGACIGCGACARVCPASCQTHGSAATEA 100
           DE+EKK+MV+ND GACIGCGACARVCPA+CQ HG     A
Sbjct: 59  DEVEKKVMVMNDTGACIGCGACARVCPANCQVHGHEQAAA 98


>ref|ZP_08870635.1| ferredoxin [Azospirillum amazonense Y2]
 gb|EGX99776.1| ferredoxin [Azospirillum amazonense Y2]
          Length = 100

 Score =  128 bits (322), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/101 (66%), Positives = 81/101 (80%), Gaps = 1/101 (0%)

Query: 1   MSFATRDGRDWTPDYLISIDANKCIGCGRCFKVCGRDVMTLRGINESGELVDLDNDDDDD 60
           MS  TRDGR W PD+LI+IDA +CIGCGRCFKVCGR VM L+G+ E G+ +    +DDDD
Sbjct: 1   MSSLTRDGRSWQPDFLIAIDAKRCIGCGRCFKVCGRGVMVLKGLTEEGD-LVDLGNDDDD 59

Query: 61  DEIEKKIMVLNDQGACIGCGACARVCPASCQTHGSAATEAA 101
           DEIEKK+MV++D GAC+GC ACARVCPA+CQTH   A +AA
Sbjct: 60  DEIEKKVMVMDDAGACVGCRACARVCPANCQTHAPLAADAA 100


>ref|YP_001241764.1| ferredoxin-3 [Bradyrhizobium sp. BTAi1]
 gb|ABQ37858.1| Ferredoxin-3 (Ferredoxin III) (FdIII) [Bradyrhizobium sp. BTAi1]
          Length = 95

 Score =  127 bits (320), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 69/97 (71%), Positives = 84/97 (86%), Gaps = 2/97 (2%)

Query: 1  MSFATRDGRDWTPDYLISIDANKCIGCGRCFKVCGRDVMTLRGINESGELVDLDNDDDDD 60
          MS +TRDGRDW PDYL++I+  KCIGCGRC+KVCGR+VMTL+GIN+ GE V+LD+D+DD+
Sbjct: 1  MSNSTRDGRDWKPDYLVAINPEKCIGCGRCYKVCGREVMTLKGINDEGEFVELDDDEDDE 60

Query: 61 DEIEKKIMVLNDQGACIGCGACARVCPASCQTHGSAA 97
             EKKIMV++D GACIGCGACARVCP +CQTH  AA
Sbjct: 61 V--EKKIMVMHDTGACIGCGACARVCPTNCQTHSPAA 95