BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0045.0005.p (505 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp|P06120.1|NIFD_BRASP RecName: Full=Nitrogenase molybdenum-iron... 1009 0.0 ref|NP_768383.1| nitrogenase molybdenum-iron protein subunit alp... 992 0.0 prf||1101438A dinitrogenase alpha 989 0.0 sp|P06769.1|NIFD_RHICP RecName: Full=Nitrogenase molybdenum-iron... 989 0.0 emb|CAA25523.1| unnamed protein product [Bradyrhizobium japonicum] 981 0.0 >sp|P06120.1|NIFD_BRASP RecName: Full=Nitrogenase molybdenum-iron protein alpha chain; AltName: Full=Dinitrogenase; AltName: Full=Nitrogenase component I pir||A23874 nitrogenase (EC 1.18.6.1) molybdenum-iron protein alpha chain - Rhizobium sp emb|CAA25596.1| unnamed protein product [Rhizobium sp. ANU289] Length = 500 Score = 1009 bits (2608), Expect = 0.0, Method: Compositional matrix adjust. Identities = 482/500 (96%), Positives = 497/500 (99%) Query: 6 MSLATTQSIAEIRARNKQLIDEVLKVYPEKTAKRRAKHLNVHQSGKSDCGVKSNIKSIPG 65 MSLATTQSIAEIRARNK+LI+EVLKVYPEKTAKRRAKHLNVHQ+GKSDCGVKSNIKSIPG Sbjct: 1 MSLATTQSIAEIRARNKELIEEVLKVYPEKTAKRRAKHLNVHQAGKSDCGVKSNIKSIPG 60 Query: 66 VMTIRGCAYAGSKGVVWGPIKDMVHISHGPVGCGQYSWGSRRNYYVGTTGIDSFVTLQFT 125 VMTIRGCAYAGSKGVVWGPIKDMVHISHGPVGCGQYSWGSRRNYYVGTTG+DSFVTLQFT Sbjct: 61 VMTIRGCAYAGSKGVVWGPIKDMVHISHGPVGCGQYSWGSRRNYYVGTTGVDSFVTLQFT 120 Query: 126 SDFQEKDIVFGGDKKLVKVLDEIQELFPLNHGITIQSECPIGLIGDDIEAVSRSKSKEYG 185 SDFQEKDIVFGGDKKL+KVLDEIQELFPLN+GITIQSECPIGLIGDDIEAVSRSKSKEYG Sbjct: 121 SDFQEKDIVFGGDKKLIKVLDEIQELFPLNNGITIQSECPIGLIGDDIEAVSRSKSKEYG 180 Query: 186 GKTIVPVRCEGFRGVSQSLGHHIANDAVRDWIFDKLDPDGKPKFEPTPYDVAIIGDYNIG 245 GKTIVPVRCEGFRGVSQSLGHHIANDAVRDWIFDKL+P+G+PKF+PTPYDVAIIGDYNIG Sbjct: 181 GKTIVPVRCEGFRGVSQSLGHHIANDAVRDWIFDKLEPEGEPKFQPTPYDVAIIGDYNIG 240 Query: 246 GDAWSSRILLEEMGLRVIAQWSGDGSLAELEATPKAKLNILHCYRSMNYISRHMEEKFGI 305 GDAWSSRILLEEMGLRVIAQWSGDGSLAELEATPKAKLNILHCYRSMNYISRHMEEKFGI Sbjct: 241 GDAWSSRILLEEMGLRVIAQWSGDGSLAELEATPKAKLNILHCYRSMNYISRHMEEKFGI 300 Query: 306 PWCEYNFFGPSKIAESLRKIAGYFDDKIKEGAERVIEKYQPLVNAVIAKYRPRLQGKTVM 365 PWCEYNFFGPSKIAESLRKIAGYFDDKIKEGAERVIEKYQPLV+AVIAKYRPRL+GKTVM Sbjct: 301 PWCEYNFFGPSKIAESLRKIAGYFDDKIKEGAERVIEKYQPLVDAVIAKYRPRLEGKTVM 360 Query: 366 LYVGGLRPRHVIGAYEDLGMEVVGTGYEFGHNDDYQRTAQHYVKDSTLIYDDVNGYEFER 425 LYVGGLRPRHVIGAYEDLGMEVVGTGYEFGHNDDYQRTAQHYVKDSTLIYDDVNGYEFER Sbjct: 361 LYVGGLRPRHVIGAYEDLGMEVVGTGYEFGHNDDYQRTAQHYVKDSTLIYDDVNGYEFER 420 Query: 426 FVEKLQPDLVGSGIKEKYVFQKMGVPFRQMHSWDYSGPYHGYDGFAIFARDMDMAVNSPI 485 FVEK+QPDLVGSGIKEKYVFQKMGVPF +MHSWDYSGPYHGYDGFAIFARDMDMAVNSPI Sbjct: 421 FVEKVQPDLVGSGIKEKYVFQKMGVPFPEMHSWDYSGPYHGYDGFAIFARDMDMAVNSPI 480 Query: 486 WKKMKAPWKEASKAKLLAAE 505 WKK KAPWKEA+K KLLAAE Sbjct: 481 WKKTKAPWKEAAKPKLLAAE 500 >ref|NP_768383.1| nitrogenase molybdenum-iron protein subunit alpha [Bradyrhizobium japonicum USDA 110] sp|P06121.2|NIFD_BRAJA RecName: Full=Nitrogenase molybdenum-iron protein alpha chain; AltName: Full=Dinitrogenase; AltName: Full=Nitrogenase component I gb|AAG60729.1|AF322012_34 NifD [Bradyrhizobium japonicum] dbj|BAC47008.1| nitrogenase molybdenum-iron protein alpha chain [Bradyrhizobium japonicum USDA 110] Length = 500 Score = 992 bits (2564), Expect = 0.0, Method: Compositional matrix adjust. Identities = 472/500 (94%), Positives = 490/500 (98%) Query: 6 MSLATTQSIAEIRARNKQLIDEVLKVYPEKTAKRRAKHLNVHQSGKSDCGVKSNIKSIPG 65 MSLATT S+AEIRARNK+LI+EVLKVYPEKTAKRRAKHLNVHQ+GKSDCGVKSNIKSIPG Sbjct: 1 MSLATTNSVAEIRARNKELIEEVLKVYPEKTAKRRAKHLNVHQAGKSDCGVKSNIKSIPG 60 Query: 66 VMTIRGCAYAGSKGVVWGPIKDMVHISHGPVGCGQYSWGSRRNYYVGTTGIDSFVTLQFT 125 VMTIRGCAYAGSKGVVWGPIKDMVHISHGPVGCGQYSWGSRRNYYVGTTGIDSFVTLQFT Sbjct: 61 VMTIRGCAYAGSKGVVWGPIKDMVHISHGPVGCGQYSWGSRRNYYVGTTGIDSFVTLQFT 120 Query: 126 SDFQEKDIVFGGDKKLVKVLDEIQELFPLNHGITIQSECPIGLIGDDIEAVSRSKSKEYG 185 SDFQEKDIVFGGDKKL K+LDEIQELFPLN+GITIQSECP+GLIGDDIEAVSR+KSKEYG Sbjct: 121 SDFQEKDIVFGGDKKLDKILDEIQELFPLNNGITIQSECPVGLIGDDIEAVSRAKSKEYG 180 Query: 186 GKTIVPVRCEGFRGVSQSLGHHIANDAVRDWIFDKLDPDGKPKFEPTPYDVAIIGDYNIG 245 GKTIVPVRCEGFRGVSQSLGHHIANDAVRDWIF ++ +GKPKFEPTPYDVAIIGDYNIG Sbjct: 181 GKTIVPVRCEGFRGVSQSLGHHIANDAVRDWIFGHIEAEGKPKFEPTPYDVAIIGDYNIG 240 Query: 246 GDAWSSRILLEEMGLRVIAQWSGDGSLAELEATPKAKLNILHCYRSMNYISRHMEEKFGI 305 GDAWSSRILLEEMGLRVIAQWSGDGSLAELEATPKAKLNILHCYRSMNYISRHMEEKFGI Sbjct: 241 GDAWSSRILLEEMGLRVIAQWSGDGSLAELEATPKAKLNILHCYRSMNYISRHMEEKFGI 300 Query: 306 PWCEYNFFGPSKIAESLRKIAGYFDDKIKEGAERVIEKYQPLVNAVIAKYRPRLQGKTVM 365 PWCEYNFFGPSKIA+SLR+IAGYFDDKIKEGAERVIEKYQPLV+AVIAKYRPRL+GKTVM Sbjct: 301 PWCEYNFFGPSKIADSLRRIAGYFDDKIKEGAERVIEKYQPLVDAVIAKYRPRLEGKTVM 360 Query: 366 LYVGGLRPRHVIGAYEDLGMEVVGTGYEFGHNDDYQRTAQHYVKDSTLIYDDVNGYEFER 425 LYVGGLRPRHVIGAYEDLGM+V+GTGYEFGHNDDYQRTAQHYVKDSTLIYDDVNGYEFER Sbjct: 361 LYVGGLRPRHVIGAYEDLGMDVIGTGYEFGHNDDYQRTAQHYVKDSTLIYDDVNGYEFER 420 Query: 426 FVEKLQPDLVGSGIKEKYVFQKMGVPFRQMHSWDYSGPYHGYDGFAIFARDMDMAVNSPI 485 FVEKLQPDLVGSGIKEKYVFQKM VPFRQMHSWDYSGPYHGYDGFAIFARDMDMAVNSPI Sbjct: 421 FVEKLQPDLVGSGIKEKYVFQKMSVPFRQMHSWDYSGPYHGYDGFAIFARDMDMAVNSPI 480 Query: 486 WKKMKAPWKEASKAKLLAAE 505 WK+ KAPWKEA AKL AAE Sbjct: 481 WKRTKAPWKEAPSAKLQAAE 500 >prf||1101438A dinitrogenase alpha Length = 510 Score = 989 bits (2557), Expect = 0.0, Method: Compositional matrix adjust. Identities = 471/500 (94%), Positives = 489/500 (97%) Query: 6 MSLATTQSIAEIRARNKQLIDEVLKVYPEKTAKRRAKHLNVHQSGKSDCGVKSNIKSIPG 65 MSLA+TQSIAEIRARNK+LI EVLKVYPEKTAKRRAKHLNVHQ+GKSDCGVKSNIKSIPG Sbjct: 1 MSLASTQSIAEIRARNKELIQEVLKVYPEKTAKRRAKHLNVHQAGKSDCGVKSNIKSIPG 60 Query: 66 VMTIRGCAYAGSKGVVWGPIKDMVHISHGPVGCGQYSWGSRRNYYVGTTGIDSFVTLQFT 125 VMTIRGCAYAGSKGVVWGPIKDMVHISHGPVGCGQYSWGSRRNYYVGTTGIDSFVTLQFT Sbjct: 61 VMTIRGCAYAGSKGVVWGPIKDMVHISHGPVGCGQYSWGSRRNYYVGTTGIDSFVTLQFT 120 Query: 126 SDFQEKDIVFGGDKKLVKVLDEIQELFPLNHGITIQSECPIGLIGDDIEAVSRSKSKEYG 185 DF+EKDIVFGGDKKLVK+LDEIQELFPLN+GITIQSECPIGLIGDDIEAVSR+KSKEYG Sbjct: 121 FDFREKDIVFGGDKKLVKILDEIQELFPLNNGITIQSECPIGLIGDDIEAVSRAKSKEYG 180 Query: 186 GKTIVPVRCEGFRGVSQSLGHHIANDAVRDWIFDKLDPDGKPKFEPTPYDVAIIGDYNIG 245 GKTIVPVRCEGFRGVSQSLGHHIANDAVRDWIFD+++ DGKPK EPTPYDVAIIGDYNIG Sbjct: 181 GKTIVPVRCEGFRGVSQSLGHHIANDAVRDWIFDQVEADGKPKVEPTPYDVAIIGDYNIG 240 Query: 246 GDAWSSRILLEEMGLRVIAQWSGDGSLAELEATPKAKLNILHCYRSMNYISRHMEEKFGI 305 GDAWSSRILLEEMGLRVIAQWSGDGSLAELEA + KLNILHCYRSMNYISRHMEEKFGI Sbjct: 241 GDAWSSRILLEEMGLRVIAQWSGDGSLAELEANVEGKLNILHCYRSMNYISRHMEEKFGI 300 Query: 306 PWCEYNFFGPSKIAESLRKIAGYFDDKIKEGAERVIEKYQPLVNAVIAKYRPRLQGKTVM 365 PWCEYNFFGPSKIAESLR+IAGYFDDKIKEGAERVIEKYQPLVNAVIAKYRPRL+GKTVM Sbjct: 301 PWCEYNFFGPSKIAESLRRIAGYFDDKIKEGAERVIEKYQPLVNAVIAKYRPRLEGKTVM 360 Query: 366 LYVGGLRPRHVIGAYEDLGMEVVGTGYEFGHNDDYQRTAQHYVKDSTLIYDDVNGYEFER 425 LYVGGLR RHVIGAYEDLGMEV+GTGYEFGHNDDYQRTAQHYVKD TLI+DDVNGYEFER Sbjct: 361 LYVGGLRSRHVIGAYEDLGMEVIGTGYEFGHNDDYQRTAQHYVKDGTLIHDDVNGYEFER 420 Query: 426 FVEKLQPDLVGSGIKEKYVFQKMGVPFRQMHSWDYSGPYHGYDGFAIFARDMDMAVNSPI 485 FVEKLQPDLVGSGIKEKYVFQKMG PFRQMHSWDYSGPYHGYDGFAIFARDMDMA+NSP+ Sbjct: 421 FVEKLQPDLVGSGIKEKYVFQKMGGPFRQMHSWDYSGPYHGYDGFAIFARDMDMAINSPV 480 Query: 486 WKKMKAPWKEASKAKLLAAE 505 WKK KAPWKEAS+AKLLAAE Sbjct: 481 WKKTKAPWKEASRAKLLAAE 500 >sp|P06769.1|NIFD_RHICP RecName: Full=Nitrogenase molybdenum-iron protein alpha chain; AltName: Full=Dinitrogenase; AltName: Full=Nitrogenase component I gb|AAA26308.1| dinitrogenase alpha-subunit [Rhizobium sp.] Length = 500 Score = 989 bits (2557), Expect = 0.0, Method: Compositional matrix adjust. Identities = 471/500 (94%), Positives = 489/500 (97%) Query: 6 MSLATTQSIAEIRARNKQLIDEVLKVYPEKTAKRRAKHLNVHQSGKSDCGVKSNIKSIPG 65 MSLA+TQSIAEIRARNK+LI EVLKVYPEKTAKRRAKHLNVHQ+GKSDCGVKSNIKSIPG Sbjct: 1 MSLASTQSIAEIRARNKELIQEVLKVYPEKTAKRRAKHLNVHQAGKSDCGVKSNIKSIPG 60 Query: 66 VMTIRGCAYAGSKGVVWGPIKDMVHISHGPVGCGQYSWGSRRNYYVGTTGIDSFVTLQFT 125 VMTIRGCAYAGSKGVVWGPIKDMVHISHGPVGCGQYSWGSRRNYYVGTTGIDSFVTLQFT Sbjct: 61 VMTIRGCAYAGSKGVVWGPIKDMVHISHGPVGCGQYSWGSRRNYYVGTTGIDSFVTLQFT 120 Query: 126 SDFQEKDIVFGGDKKLVKVLDEIQELFPLNHGITIQSECPIGLIGDDIEAVSRSKSKEYG 185 DF+EKDIVFGGDKKLVK+LDEIQELFPLN+GITIQSECPIGLIGDDIEAVSR+KSKEYG Sbjct: 121 FDFREKDIVFGGDKKLVKILDEIQELFPLNNGITIQSECPIGLIGDDIEAVSRAKSKEYG 180 Query: 186 GKTIVPVRCEGFRGVSQSLGHHIANDAVRDWIFDKLDPDGKPKFEPTPYDVAIIGDYNIG 245 GKTIVPVRCEGFRGVSQSLGHHIANDAVRDWIFD+++ DGKPK EPTPYDVAIIGDYNIG Sbjct: 181 GKTIVPVRCEGFRGVSQSLGHHIANDAVRDWIFDQVEADGKPKVEPTPYDVAIIGDYNIG 240 Query: 246 GDAWSSRILLEEMGLRVIAQWSGDGSLAELEATPKAKLNILHCYRSMNYISRHMEEKFGI 305 GDAWSSRILLEEMGLRVIAQWSGDGSLAELEA + KLNILHCYRSMNYISRHMEEKFGI Sbjct: 241 GDAWSSRILLEEMGLRVIAQWSGDGSLAELEANVEGKLNILHCYRSMNYISRHMEEKFGI 300 Query: 306 PWCEYNFFGPSKIAESLRKIAGYFDDKIKEGAERVIEKYQPLVNAVIAKYRPRLQGKTVM 365 PWCEYNFFGPSKIAESLR+IAGYFDDKIKEGAERVIEKYQPLVNAVIAKYRPRL+GKTVM Sbjct: 301 PWCEYNFFGPSKIAESLRRIAGYFDDKIKEGAERVIEKYQPLVNAVIAKYRPRLEGKTVM 360 Query: 366 LYVGGLRPRHVIGAYEDLGMEVVGTGYEFGHNDDYQRTAQHYVKDSTLIYDDVNGYEFER 425 LYVGGLR RHVIGAYEDLGMEV+GTGYEFGHNDDYQRTAQHYVKD TLI+DDVNGYEFER Sbjct: 361 LYVGGLRSRHVIGAYEDLGMEVIGTGYEFGHNDDYQRTAQHYVKDGTLIHDDVNGYEFER 420 Query: 426 FVEKLQPDLVGSGIKEKYVFQKMGVPFRQMHSWDYSGPYHGYDGFAIFARDMDMAVNSPI 485 FVEKLQPDLVGSGIKEKYVFQKMG PFRQMHSWDYSGPYHGYDGFAIFARDMDMA+NSP+ Sbjct: 421 FVEKLQPDLVGSGIKEKYVFQKMGGPFRQMHSWDYSGPYHGYDGFAIFARDMDMAINSPV 480 Query: 486 WKKMKAPWKEASKAKLLAAE 505 WKK KAPWKEAS+AKLLAAE Sbjct: 481 WKKTKAPWKEASRAKLLAAE 500 >emb|CAA25523.1| unnamed protein product [Bradyrhizobium japonicum] Length = 515 Score = 981 bits (2536), Expect = 0.0, Method: Compositional matrix adjust. Identities = 464/493 (94%), Positives = 485/493 (98%) Query: 6 MSLATTQSIAEIRARNKQLIDEVLKVYPEKTAKRRAKHLNVHQSGKSDCGVKSNIKSIPG 65 MSLATT S+AEIRARNK+LI+EVLKVYPEKTAKRRAKHLNVHQ+GKSDCGVKSNIKSIPG Sbjct: 1 MSLATTNSVAEIRARNKELIEEVLKVYPEKTAKRRAKHLNVHQAGKSDCGVKSNIKSIPG 60 Query: 66 VMTIRGCAYAGSKGVVWGPIKDMVHISHGPVGCGQYSWGSRRNYYVGTTGIDSFVTLQFT 125 VMTIRGCAYAGSKGVVWGPIKDMVHISHGPVGCGQYSWGSRRNYYVGTTGIDSFVTLQFT Sbjct: 61 VMTIRGCAYAGSKGVVWGPIKDMVHISHGPVGCGQYSWGSRRNYYVGTTGIDSFVTLQFT 120 Query: 126 SDFQEKDIVFGGDKKLVKVLDEIQELFPLNHGITIQSECPIGLIGDDIEAVSRSKSKEYG 185 SDFQEKDIVFGGDKKL K+LDEIQELFPLN+GITIQSECP+GLIGDDIEAVSR+KSKEYG Sbjct: 121 SDFQEKDIVFGGDKKLDKILDEIQELFPLNNGITIQSECPVGLIGDDIEAVSRAKSKEYG 180 Query: 186 GKTIVPVRCEGFRGVSQSLGHHIANDAVRDWIFDKLDPDGKPKFEPTPYDVAIIGDYNIG 245 GKTIVPVRCEGFRGVSQSLGHHIANDAVRDWIF ++ +GKPKFEPTPYDVAIIGDYNIG Sbjct: 181 GKTIVPVRCEGFRGVSQSLGHHIANDAVRDWIFGHIEAEGKPKFEPTPYDVAIIGDYNIG 240 Query: 246 GDAWSSRILLEEMGLRVIAQWSGDGSLAELEATPKAKLNILHCYRSMNYISRHMEEKFGI 305 GDAWSSRILLEEMGLRVIAQWSGDGSLAELEATPKAKLNILHCYRSMNYISRHMEEKFGI Sbjct: 241 GDAWSSRILLEEMGLRVIAQWSGDGSLAELEATPKAKLNILHCYRSMNYISRHMEEKFGI 300 Query: 306 PWCEYNFFGPSKIAESLRKIAGYFDDKIKEGAERVIEKYQPLVNAVIAKYRPRLQGKTVM 365 PWCEYNFFGPSKIA+SLR+IAGYFDDKIKEGAERVIEKYQPLV+AVIAKYRPRL+GKTVM Sbjct: 301 PWCEYNFFGPSKIADSLRRIAGYFDDKIKEGAERVIEKYQPLVDAVIAKYRPRLEGKTVM 360 Query: 366 LYVGGLRPRHVIGAYEDLGMEVVGTGYEFGHNDDYQRTAQHYVKDSTLIYDDVNGYEFER 425 LYVGGLRPRHVIGAYEDLGM+V+GTGYEFGHNDDYQRTAQHYVKDSTLIYDDVNGYEFER Sbjct: 361 LYVGGLRPRHVIGAYEDLGMDVIGTGYEFGHNDDYQRTAQHYVKDSTLIYDDVNGYEFER 420 Query: 426 FVEKLQPDLVGSGIKEKYVFQKMGVPFRQMHSWDYSGPYHGYDGFAIFARDMDMAVNSPI 485 FVE+LQPDLVGSGIKEKYVFQKM VPFRQMHSWDYSGPYHGYDGFAIFARDMDMAVNSPI Sbjct: 421 FVERLQPDLVGSGIKEKYVFQKMSVPFRQMHSWDYSGPYHGYDGFAIFARDMDMAVNSPI 480 Query: 486 WKKMKAPWKEASK 498 WK+ KAPWK+A + Sbjct: 481 WKRTKAPWKDAER 493