BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0045.0003.p (439 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08630053.1| iron-sulfur cluster assembly protein SufD [Br... 515 e-144 ref|NP_770981.1| hypothetical protein blr4341 [Bradyrhizobium ja... 502 e-140 ref|YP_001205549.1| sufD, needed for fhuF Fe-S center production... 488 e-135 ref|YP_577578.1| FeS assembly protein SufD [Nitrobacter hamburge... 479 e-133 ref|YP_001239944.1| sufD, needed for fhuF Fe-S center production... 477 e-132 >ref|ZP_08630053.1| iron-sulfur cluster assembly protein SufD [Bradyrhizobiaceae bacterium SG-6C] gb|EGP07422.1| iron-sulfur cluster assembly protein SufD [Bradyrhizobiaceae bacterium SG-6C] Length = 440 Score = 515 bits (1327), Expect = e-144, Method: Compositional matrix adjust. Identities = 259/428 (60%), Positives = 322/428 (75%), Gaps = 2/428 (0%) Query: 13 ATDNVFAAAHGRLPGSGLVAHIRARAFEAYERAGLP-QRIEAWKYTDLRALMGAVLPLAP 71 A +FAAA RLPGSG VA +R AF+ + R GLP +RIE WKYTDLRAL+ V PLAP Sbjct: 12 APGELFAAARSRLPGSGPVAEVRQNAFDDFARRGLPHRRIEEWKYTDLRALLREVAPLAP 71 Query: 72 RPDAAALVRAAASVKQTAVDRAVKLVLVDGVFVPELSDVDSLEDGVAVRSLREVLEDTTD 131 PD A L RAA ++K ++ KLVLVDGVF P+LSDV +LE GV +R+LREVLED + Sbjct: 72 APDQADLTRAAKAIKSLGIENTQKLVLVDGVFTPQLSDVTTLEAGVHLRTLREVLEDGGN 131 Query: 132 SAMAGLV-LSTTTDAVISLNAAMATDGFVITIADGEAVKRPIQIVHVTTGSLVSNFTRSY 190 A L+ S +DA+ISLNAA+ATDG V+ +A+G + RPI IVHV+T S S TRS Sbjct: 132 KVRADLLQTSVASDAMISLNAALATDGVVVDVAEGVTLTRPIHIVHVSTDSGSSLVTRSL 191 Query: 191 LQLGQGAHAALVESFVSAEGASGYQTNDATIALVGDEANLSHIRLAADAADAVHISSSII 250 L+L +GA A LVESFV+AEGA YQT+D+ + +GDEA L H+RL DA DA H+++ I Sbjct: 192 LKLAKGAQATLVESFVAAEGAKSYQTHDSVVIWIGDEAELQHVRLMEDALDAAHVTTGIF 251 Query: 251 AVGAKAKLDFFSMTCSGSVSRYQGFVTLTGEGSKLSANAVNLIRHKQHVDTTMVVDHAVP 310 +GAKAKL+ F++T GSVSRYQGF+ GEGS+L+ N VNL+ ++H DTT+VVDHAVP Sbjct: 252 TIGAKAKLNTFNLTNGGSVSRYQGFIKFAGEGSELTTNGVNLLGARRHGDTTLVVDHAVP 311 Query: 311 HCTSREKFRAVIDECGRSVLQGRIVVRPGAQKTDATLTTRALLLSDEARADNKPELEILA 370 HC+SRE FRAV+D+ SV QGRI+V+P AQKTD + TRALLLSDEA AD+KPELEI A Sbjct: 312 HCSSREVFRAVLDDRAHSVFQGRIIVQPDAQKTDGKMMTRALLLSDEAEADSKPELEIFA 371 Query: 371 DDVTCGHGSTSGALDGALVFYLRARGLSEKDAQALLIGAFLGEAIEEIVPESLRDFVTAQ 430 DDVTCGHG+T+GALD +L+FYLRARGL EK+AQALLI AF+GEAIE IV ++LR+ A Sbjct: 372 DDVTCGHGATAGALDESLLFYLRARGLPEKEAQALLIAAFVGEAIESIVDDNLREVAMAA 431 Query: 431 TEHWMQAR 438 W+ AR Sbjct: 432 AGRWLAAR 439 >ref|NP_770981.1| hypothetical protein blr4341 [Bradyrhizobium japonicum USDA 110] dbj|BAC49606.1| blr4341 [Bradyrhizobium japonicum USDA 110] Length = 434 Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust. Identities = 260/439 (59%), Positives = 324/439 (73%), Gaps = 7/439 (1%) Query: 1 MKQVVTKTAAGRATDNVFAAAHGRLPGSGLVAHIRARAFEAYERAGLP-QRIEAWKYTDL 59 M V KT GRA ++FA+A GRLPGS V +R AFE YER GLP +RIE WKYTDL Sbjct: 1 MNVAVAKTGNGRAVSDLFASAEGRLPGSPAVVAVRREAFETYERLGLPHRRIEEWKYTDL 60 Query: 60 RALMGAVLPLAPRPDAAALVRAAASVKQTAVDRAVKLVLVDGVFVPELSDVDSLEDGVAV 119 RAL+G VLPLA PD AAL RAA +VK A++ A KLVLVDGVF +LSDV +L V Sbjct: 61 RALVGEVLPLAAAPDTAALKRAADAVKAHAIEGARKLVLVDGVFAADLSDVKALASEVGF 120 Query: 120 RSLREVLEDTTDSAMAGLVLSTTTDAVISLNAAMATDGFVITIADGEAVKRPIQIVHVTT 179 ++LRE LE A L+++ +TDAVI+LNAA+ATDG V++IADG + PIQI+H+ T Sbjct: 121 KTLRETLEKD-----AALLMTASTDAVIALNAALATDGVVLSIADGAQLSAPIQIIHIAT 175 Query: 180 GSLVSNFTRSYLQLGQGAHAALVESFVSAEGASGYQTNDATIALVGDEANLSHIRLAADA 239 + S FTRS + +G GA A ++ESFV+A GA YQ +DA I +GD A+++HIRL DA Sbjct: 176 AASASAFTRSQVAVGNGARATIIESFVAA-GAKAYQVSDAVIVTIGDNADVAHIRLMDDA 234 Query: 240 ADAVHISSSIIAVGAKAKLDFFSMTCSGSVSRYQGFVTLTGEGSKLSANAVNLIRHKQHV 299 DAV+I+S + VGA K++FF+MT +VSR QGF+TL GEGS L+ N VNL++ +H Sbjct: 235 PDAVNITSQFVTVGANTKVNFFNMTSGAAVSRLQGFITLAGEGSDLAINGVNLLQKTEHG 294 Query: 300 DTTMVVDHAVPHCTSREKFRAVIDECGRSVLQGRIVVRPGAQKTDATLTTRALLLSDEAR 359 DTT+VVDHAVP+C SRE FRAVID+ SV QGRI+VRP AQKTD + TRALLLSDEA Sbjct: 295 DTTLVVDHAVPNCVSREIFRAVIDDRAHSVFQGRIIVRPDAQKTDGKMMTRALLLSDEAE 354 Query: 360 ADNKPELEILADDVTCGHGSTSGALDGALVFYLRARGLSEKDAQALLIGAFLGEAIEEIV 419 ADNKPELEI ADDV+CGHG+T+GALD +L+FYL+ARGL EK AQALLI AF+GEAIE+I Sbjct: 355 ADNKPELEIFADDVSCGHGATAGALDDSLLFYLKARGLPEKQAQALLIQAFVGEAIEQIA 414 Query: 420 PESLRDFVTAQTEHWMQAR 438 + LR+ V E W++ R Sbjct: 415 DDGLREHVIGIAERWLERR 433 >ref|YP_001205549.1| sufD, needed for fhuF Fe-S center production/stability [Bradyrhizobium sp. ORS 278] emb|CAL77323.1| sufD, needed for fhuF Fe-S center production/stability [Bradyrhizobium sp. ORS 278] Length = 440 Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust. Identities = 258/439 (58%), Positives = 328/439 (74%), Gaps = 1/439 (0%) Query: 1 MKQVVTKTAAGRATDNVFAAAHGRLPGSGLVAHIRARAFEAYERAGLP-QRIEAWKYTDL 59 M + K +G A +VFAAA GRLPG+G V IR AF A+ER GLP +RIE WKYTDL Sbjct: 1 MNVALVKNDSGPAASSVFAAAQGRLPGAGKVVEIRREAFAAFERTGLPHRRIEEWKYTDL 60 Query: 60 RALMGAVLPLAPRPDAAALVRAAASVKQTAVDRAVKLVLVDGVFVPELSDVDSLEDGVAV 119 RAL+ VLPLA PDAAAL RA A++ ++D A KLVLVDGV ELSD+ +L GV V Sbjct: 61 RALVREVLPLAGAPDAAALARAKAAIAPISIDGAAKLVLVDGVVAAELSDLAALPAGVGV 120 Query: 120 RSLREVLEDTTDSAMAGLVLSTTTDAVISLNAAMATDGFVITIADGEAVKRPIQIVHVTT 179 R+LR VL++ ++ A+ L+L+ +D ++SLNAA+ATDG V+T+ADG + P+ ++HV T Sbjct: 121 RTLRAVLDEASNEAIGDLLLTKVSDPMLSLNAALATDGVVVTVADGAQLTEPLHLIHVAT 180 Query: 180 GSLVSNFTRSYLQLGQGAHAALVESFVSAEGASGYQTNDATIALVGDEANLSHIRLAADA 239 S + ++RS++++GQGA A LVE+ ++AEG + YQ NDA + VGD A LSHIRL DA Sbjct: 181 ASKAARYSRSHVKVGQGARATLVETSIAAEGVAAYQANDAAVIWVGDGAQLSHIRLMRDA 240 Query: 240 ADAVHISSSIIAVGAKAKLDFFSMTCSGSVSRYQGFVTLTGEGSKLSANAVNLIRHKQHV 299 ADAV++SS + VGAK+KL F+MT G+VSR Q F TL GE S+L N VNL+R KQH Sbjct: 241 ADAVNVSSELFTVGAKSKLSLFNMTSGGAVSRLQAFFTLAGEASELIVNGVNLLRDKQHG 300 Query: 300 DTTMVVDHAVPHCTSREKFRAVIDECGRSVLQGRIVVRPGAQKTDATLTTRALLLSDEAR 359 D T+VVDHAVP CTSRE FRAV+D+ SV QGRI+VR AQ+TD + TRALLLSDEA Sbjct: 301 DMTLVVDHAVPGCTSRENFRAVLDDRAHSVFQGRIIVRQDAQQTDGKMMTRALLLSDEAE 360 Query: 360 ADNKPELEILADDVTCGHGSTSGALDGALVFYLRARGLSEKDAQALLIGAFLGEAIEEIV 419 AD+KPELEI ADDV+CGHG+T+GALD +L+FYLRARGL EK AQALLI AF+GEAIE I Sbjct: 361 ADSKPELEIFADDVSCGHGATAGALDESLLFYLRARGLPEKQAQALLIQAFVGEAIEAIE 420 Query: 420 PESLRDFVTAQTEHWMQAR 438 ++LR+ V A EHW+++R Sbjct: 421 DDALRERVIAAAEHWLESR 439 >ref|YP_577578.1| FeS assembly protein SufD [Nitrobacter hamburgensis X14] gb|ABE63118.1| Iron-regulated ABC transporter permease protein SufD [Nitrobacter hamburgensis X14] Length = 441 Score = 479 bits (1232), Expect = e-133, Method: Compositional matrix adjust. Identities = 256/439 (58%), Positives = 311/439 (70%), Gaps = 1/439 (0%) Query: 1 MKQVVTKTAAGRATDNVFAAAHGRLPGSGLVAHIRARAFEAYERAGLP-QRIEAWKYTDL 59 M + KT GRA FA A RLPG+G VA R +AFEAYE GLP +R+E WKYTDL Sbjct: 2 MDVALAKTDTGRAASEAFAVACSRLPGAGKVAAARQKAFEAYESLGLPHRRVEDWKYTDL 61 Query: 60 RALMGAVLPLAPRPDAAALVRAAASVKQTAVDRAVKLVLVDGVFVPELSDVDSLEDGVAV 119 R LM VLPLA PD AAL +A +K ++ A + VLVDGVFVP+LSDV LEDG+ Sbjct: 62 RVLMREVLPLAAAPDQAALAKAGEILKAQSLGDAYRFVLVDGVFVPQLSDVGGLEDGLRA 121 Query: 120 RSLREVLEDTTDSAMAGLVLSTTTDAVISLNAAMATDGFVITIADGEAVKRPIQIVHVTT 179 RS EVL TD + S TTD ++SLNAAM TDG +I + D ++ +PI +VHVTT Sbjct: 122 RSFHEVLGTGTDQSADLFTTSATTDVMVSLNAAMTTDGVIIEVGDRISLTKPIHVVHVTT 181 Query: 180 GSLVSNFTRSYLQLGQGAHAALVESFVSAEGASGYQTNDATIALVGDEANLSHIRLAADA 239 S S FTRS L +G+ A L+ESFV+A+ A YQ +DA I VGD A+++HIRL ADA Sbjct: 182 VSSASAFTRSRLTIGKAARVTLIESFVAADDAKSYQAHDALIVAVGDGADVAHIRLMADA 241 Query: 240 ADAVHISSSIIAVGAKAKLDFFSMTCSGSVSRYQGFVTLTGEGSKLSANAVNLIRHKQHV 299 DA +ISS+I+ VG +AKL+ FS+T G +SRYQ F TL GEGS + N V+L++ QH Sbjct: 242 DDATNISSAIVTVGGEAKLNLFSLTSGGRLSRYQVFATLEGEGSDVFFNGVSLLKDTQHA 301 Query: 300 DTTMVVDHAVPHCTSREKFRAVIDECGRSVLQGRIVVRPGAQKTDATLTTRALLLSDEAR 359 D T+VVDHAVPHCTSRE FRAV+D+ SV QG+I+VRP AQKTD + TRALLLSD A Sbjct: 302 DMTLVVDHAVPHCTSREVFRAVVDDRAHSVFQGKIIVRPDAQKTDGKMMTRALLLSDGAE 361 Query: 360 ADNKPELEILADDVTCGHGSTSGALDGALVFYLRARGLSEKDAQALLIGAFLGEAIEEIV 419 AD+KPELEI ADDVTCGHG+T GALD +L+FYLRARGLSEK+AQALLI AF+GEAIE I Sbjct: 362 ADSKPELEIFADDVTCGHGATIGALDDSLLFYLRARGLSEKEAQALLIQAFVGEAIESIA 421 Query: 420 PESLRDFVTAQTEHWMQAR 438 + LRD E W+ AR Sbjct: 422 DDGLRDVAIGAAERWLAAR 440 >ref|YP_001239944.1| sufD, needed for fhuF Fe-S center production/stability [Bradyrhizobium sp. BTAi1] gb|ABQ36038.1| Iron-regulated ABC transporter permease protein SufD [Bradyrhizobium sp. BTAi1] Length = 440 Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust. Identities = 256/439 (58%), Positives = 329/439 (74%), Gaps = 1/439 (0%) Query: 1 MKQVVTKTAAGRATDNVFAAAHGRLPGSGLVAHIRARAFEAYERAGLP-QRIEAWKYTDL 59 M + K +G A +VFAAA GRLPG+G VA IR AF A+ER GLP +RIE WKYTDL Sbjct: 1 MNVALVKNDSGPAASSVFAAAQGRLPGAGKVADIRREAFAAFERTGLPHRRIEEWKYTDL 60 Query: 60 RALMGAVLPLAPRPDAAALVRAAASVKQTAVDRAVKLVLVDGVFVPELSDVDSLEDGVAV 119 RAL+ VLPLA PDAAAL RA ++ A+D A K+VLVDGV ELSD+ +L GV+V Sbjct: 61 RALVREVLPLAGTPDAAALARAKVAIASVAIDGATKIVLVDGVVALELSDLAALPSGVSV 120 Query: 120 RSLREVLEDTTDSAMAGLVLSTTTDAVISLNAAMATDGFVITIADGEAVKRPIQIVHVTT 179 R+LR +L++ ++ + L+L+ +D ++SLNAA+ATDG V+T+ADG + P+Q++HV T Sbjct: 121 RTLRALLDEQSNESRGDLLLTKASDPMLSLNAALATDGVVVTVADGVQLSSPLQLIHVAT 180 Query: 180 GSLVSNFTRSYLQLGQGAHAALVESFVSAEGASGYQTNDATIALVGDEANLSHIRLAADA 239 S V+ ++RS++ +GQGA AALVE+ ++AEGA+ YQ NDA + VGDEA LSH+RL DA Sbjct: 181 ASKVARYSRSHVLIGQGARAALVENSIAAEGAAAYQANDAAVIWVGDEAALSHVRLMRDA 240 Query: 240 ADAVHISSSIIAVGAKAKLDFFSMTCSGSVSRYQGFVTLTGEGSKLSANAVNLIRHKQHV 299 D V++SS + VGAK+KL F+MT G+VSR Q F+TL GE S+L N VNL+R KQH Sbjct: 241 TDVVNVSSELFTVGAKSKLSLFNMTSGGAVSRLQAFITLAGEASELIVNGVNLLRDKQHG 300 Query: 300 DTTMVVDHAVPHCTSREKFRAVIDECGRSVLQGRIVVRPGAQKTDATLTTRALLLSDEAR 359 D T+VVDHAVP CTSRE FRAV+D+ SV QGRI+VR AQ+TD + TRALLLSDEA Sbjct: 301 DMTLVVDHAVPGCTSRENFRAVLDDRAHSVFQGRIIVRQDAQQTDGKMMTRALLLSDEAE 360 Query: 360 ADNKPELEILADDVTCGHGSTSGALDGALVFYLRARGLSEKDAQALLIGAFLGEAIEEIV 419 AD+KPELEI ADDV+CGHG+T+GALD +L+FYL+ARGL EK AQALLI AF+GEAIE I Sbjct: 361 ADSKPELEIFADDVSCGHGATAGALDDSLLFYLQARGLPEKQAQALLIQAFVGEAIEAIE 420 Query: 420 PESLRDFVTAQTEHWMQAR 438 + LR+ V A + W++AR Sbjct: 421 DDDLRERVIAAAQDWLEAR 439