BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0044.0023.p (322 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770717.1| hypothetical protein bll4077 [Bradyrhizobium ja... 398 e-109 ref|ZP_08629518.1| hypothetical protein CSIRO_2609 [Bradyrhizobi... 345 8e-93 ref|YP_782227.1| hypothetical protein RPE_3314 [Rhodopseudomonas... 330 2e-88 ref|YP_318306.1| hypothetical protein Nwi_1693 [Nitrobacter wino... 326 3e-87 ref|ZP_01047319.1| hypothetical protein NB311A_19200 [Nitrobacte... 318 8e-85 >ref|NP_770717.1| hypothetical protein bll4077 [Bradyrhizobium japonicum USDA 110] dbj|BAC49342.1| bll4077 [Bradyrhizobium japonicum USDA 110] Length = 325 Score = 398 bits (1022), Expect = e-109, Method: Compositional matrix adjust. Identities = 205/323 (63%), Positives = 255/323 (78%), Gaps = 3/323 (0%) Query: 1 MIGIFTVALAAGAASALMFASISSGALISILLFYLASLPIMVAALGWGPLAAAIGGVGAA 60 M+ +AL AGAASALMFASI SGALIS++LFYLA LP+MVAA+GWGPL A++GG+ AA Sbjct: 1 MMAFGLIALIAGAASALMFASIVSGALISLVLFYLAPLPLMVAAIGWGPLCASLGGIAAA 60 Query: 61 SVLGTIFGLPYSIAFAMMVAVPGWWLGHLALLGRPIAGVAGDSAKQQP--PALEWYPVGR 118 LG +FGLPY IAFA+ VA+P WWLGHL LL R + V D+A + P LEWYPVGR Sbjct: 61 IGLGALFGLPYCIAFAVTVALPAWWLGHLVLLSRQVGPVTPDAATEPAAGPELEWYPVGR 120 Query: 119 ILLWIAAFAIITTIVALLTLGTDTETITGTLRRGLLKMLSAGEAQPSGDIERLVDALVIF 178 ILLWIA FA +TTI ALLTLGTD +TI GTLRRGL+++L A + Q SG+ ++ VDALV Sbjct: 121 ILLWIAGFAALTTIAALLTLGTDADTIIGTLRRGLMRILRATDPQASGEADQFVDALVRI 180 Query: 179 APLAATVISMVTLTLNLWLAGKITQTSGRLNRPWPEFRSTALPAMTLLALIVAVGASFVG 238 AP AAT+++M+TLTLNLWL+ ++T TSGRL RPWP+ + LP MTL+AL +A+ F G Sbjct: 181 APAAATIVAMMTLTLNLWLSARVTATSGRLRRPWPDLMTAELPPMTLVALCIALAFCFTG 240 Query: 239 GMLALLAQIVTTALVIAYALVGFAVLHTLTLSLTNRGFWLGGIYAVVAMFGWPIVAMFAL 298 G+LA++AQI T AL++ YAL GFAVLHTLTL+L +R FWLG YAVV +FGWP++AM L Sbjct: 241 GLLAIVAQITTAALMMGYALTGFAVLHTLTLALKSRTFWLGSTYAVVVVFGWPVIAMVIL 300 Query: 299 GIADAVFGLRQRYLRTR-PPPLP 320 G+ADAVFG R+R+LR+R PPPLP Sbjct: 301 GLADAVFGFRERFLRSRQPPPLP 323 >ref|ZP_08629518.1| hypothetical protein CSIRO_2609 [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08011.1| hypothetical protein CSIRO_2609 [Bradyrhizobiaceae bacterium SG-6C] Length = 321 Score = 345 bits (884), Expect = 8e-93, Method: Compositional matrix adjust. Identities = 181/305 (59%), Positives = 229/305 (75%), Gaps = 3/305 (0%) Query: 18 MFASISSGALISILLFYLASLPIMVAALGWGPLAAAIGGVGAASVLGTIFGLPYSIAFAM 77 MFASI SGA+ISI+LFYLA LP+MVAALGWG + IGG+ AA LG IFG+PY +AFA+ Sbjct: 18 MFASIVSGAVISIVLFYLAPLPLMVAALGWGSATSLIGGIVAAISLGAIFGIPYMLAFAL 77 Query: 78 MVAVPGWWLGHLALLGRPIAGVAGDSAKQQPPALEWYPVGRILLWIAAFAIITTIVALLT 137 +A+P WWLG+L LL RP++ PAL+WYP GRIL+WIAAFA +TT+ ALLT Sbjct: 78 TIALPAWWLGYLTLLARPVSN--DPQLANIAPALDWYPTGRILVWIAAFATLTTVSALLT 135 Query: 138 LGTDTETITGTLRRGLLKMLSAGEAQPSGDIERLVDALVIFAPLAATVISMVTLTLNLWL 197 LGTD +TIT LRRGLL+++ A P+G+ ER+VDALV AP AT+I+M+TLTLNLWL Sbjct: 136 LGTDADTITAALRRGLLRIIGGRGAVPAGESERVVDALVAVAPGVATIIAMMTLTLNLWL 195 Query: 198 AGKITQTSGRLNRPWPEFRSTALPAMTLLALIVAVGASFVGGMLALLAQIVTTALVIAYA 257 A +IT TSGRLNRPWP+ R+T +P + L AL+VAV F GG+LA++AQI ++AL++AYA Sbjct: 196 AARITTTSGRLNRPWPDLRTTTMPKLVLGALLVAVVLCFTGGLLAMVAQIASSALLMAYA 255 Query: 258 LVGFAVLHTLTLSLTNRGFWLGGIYAVVAMFGWPIVAMFALGIADAVFGLRQRYLRTR-P 316 + GFAVLHT+T + + R F LG YA GWP+V M LG+ADAV G+RQ Y R P Sbjct: 256 ITGFAVLHTVTQAFSGRAFVLGAAYAGTLFIGWPLVGMIGLGLADAVLGIRQAYWNRRGP 315 Query: 317 PPLPA 321 PPLP+ Sbjct: 316 PPLPS 320 >ref|YP_782227.1| hypothetical protein RPE_3314 [Rhodopseudomonas palustris BisA53] gb|ABJ07247.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53] Length = 329 Score = 330 bits (846), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 182/311 (58%), Positives = 226/311 (72%), Gaps = 3/311 (0%) Query: 1 MIGIFTVALAAGAASALMFASISSGALISILLFYLASLPIMVAALGWGPLAAAIGGVGAA 60 M+ I +++AAG ASALMFASI SGA +S+LLFYLA LP+MVAALGWG +AIGGV AA Sbjct: 2 MVNIL-ISIAAGCASALMFASIISGAAVSLLLFYLAPLPLMVAALGWGGTGSAIGGVIAA 60 Query: 61 SVLGTIFGLPYSIAFAMMVAVPGWWLGHLALLGRPIAGVAGDSAKQQPPALEWYPVGRIL 120 LGT+FG PY AF + VA+P WWLGHLALLGRP A + Q PALEWYPVGRI+ Sbjct: 61 LGLGTLFGWPYMAAFMVTVALPAWWLGHLALLGRPAA--PDIAPADQAPALEWYPVGRII 118 Query: 121 LWIAAFAIITTIVALLTLGTDTETITGTLRRGLLKMLSAGEAQPSGDIERLVDALVIFAP 180 W A A +TT+ ALLTLGTD IT LR GLL+++ P D E+LV+AL AP Sbjct: 119 AWTAGLATLTTVGALLTLGTDGAAITEGLRSGLLRVMGDRGTTPQVDREQLVNALASIAP 178 Query: 181 LAATVISMVTLTLNLWLAGKITQTSGRLNRPWPEFRSTALPAMTLLALIVAVGASFVGGM 240 AA V++M+TLT+NLWLAGKIT+TSGRL RPWP+ ++ +LP MTL L +A+ FVGG+ Sbjct: 179 SAAAVVAMLTLTVNLWLAGKITKTSGRLQRPWPDLKAASLPPMTLAVLSLALAGGFVGGL 238 Query: 241 LALLAQIVTTALVIAYALVGFAVLHTLTLSLTNRGFWLGGIYAVVAMFGWPIVAMFALGI 300 + ++ QI + AL++AYAL G A LHTL+L + NR F LG YA+V FGWPI+ M ALG+ Sbjct: 239 VGIIGQIASAALLMAYALHGLATLHTLSLPIRNRTFMLGSTYAIVLTFGWPILLMVALGL 298 Query: 301 ADAVFGLRQRY 311 DAVF LR R+ Sbjct: 299 IDAVFNLRGRF 309 >ref|YP_318306.1| hypothetical protein Nwi_1693 [Nitrobacter winogradskyi Nb-255] gb|ABA04954.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255] Length = 336 Score = 326 bits (835), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 189/327 (57%), Positives = 233/327 (71%), Gaps = 15/327 (4%) Query: 7 VALAAGAASALMFASISSGALISILLFYLASLPIMVAALGWGPLAAAIGGVGAASVLGTI 66 VA+AAG ASALMFASI SGALIS+LLFYLA LP+MVAA+GWGP AAIGG AA LG + Sbjct: 7 VAIAAGCASALMFASIISGALISVLLFYLAPLPLMVAAMGWGPACAAIGGAFAAVSLGAL 66 Query: 67 FGLPYSIAFAMMVAVPGWWLGHLALLGRPIAGVAG-------------DSAKQQPPALEW 113 FG YS AF + VA+P WWLGHL LLGRP AG+ D+A PP ++W Sbjct: 67 FGASYSAAFVLTVALPAWWLGHLVLLGRP-AGMDAPPQRAEQATSQGTDAALAAPPPVDW 125 Query: 114 YPVGRILLWIAAFAIITTIVALLTLGTDTETITGTLRRGLLKMLSAGEAQPSGDIERLVD 173 YP+GR+L+WIA FA +TT ALLTLG+D IT LRRGL+++ + +VD Sbjct: 126 YPLGRVLVWIAGFAALTTTAALLTLGSDASAITDALRRGLVRIAKVQDGASGDRASEVVD 185 Query: 174 ALVIFAPLAATVISMVTLTLNLWLAGKITQTSGRLNRPWPEFRSTALPAMTLLALIVAVG 233 A V AP AA I+M TLTLN+WLA K+T SGRL RPWP+ R+T LP M L+A ++A+ Sbjct: 186 AFVAIAPAAAATIAMATLTLNMWLAAKVTAASGRLRRPWPDVRTTTLPPMALVATMIALA 245 Query: 234 ASFVGGMLALLAQIVTTALVIAYALVGFAVLHTLTLSLTNRGFWLGGIYAVVAMFGWPIV 293 SFVGG+ A+LAQI+T L++ YAL GFAVLHT+TL++ NRG WLG +YA+V MF WP++ Sbjct: 246 LSFVGGLPAMLAQIITACLMMTYALAGFAVLHTITLTMRNRGLWLGSVYAIVLMFVWPVI 305 Query: 294 AMFALGIADAVFGLRQRYL-RTRPPPL 319 + +GIADAVFG RQRYL R PPPL Sbjct: 306 TVVGIGIADAVFGFRQRYLQRHTPPPL 332 >ref|ZP_01047319.1| hypothetical protein NB311A_19200 [Nitrobacter sp. Nb-311A] gb|EAQ34747.1| hypothetical protein NB311A_19200 [Nitrobacter sp. Nb-311A] Length = 328 Score = 318 bits (815), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 183/318 (57%), Positives = 230/318 (72%), Gaps = 5/318 (1%) Query: 7 VALAAGAASALMFASISSGALISILLFYLASLPIMVAALGWGPLAAAIGGVGAASVLGTI 66 +A+AAG ASALMFASI S ALIS+LLFYLA LP+MVAA+GWGP AA+GG A + LG + Sbjct: 7 IAIAAGCASALMFASIISDALISLLLFYLAPLPLMVAAMGWGPACAALGGAFAGASLGVL 66 Query: 67 FGLPYSIAFAMMVAVPGWWLGHLALLGRPIAGVAG----DSAKQQPPALEWYPVGRILLW 122 FG YS AF + VA+P WWLGHL LLGRP D+A PP ++WYP+GRIL+W Sbjct: 67 FGPSYSAAFVLTVALPAWWLGHLVLLGRPATSDTSPQGVDAAPGDPPPVDWYPLGRILIW 126 Query: 123 IAAFAIITTIVALLTLGTDTETITGTLRRGLLKMLSAGEAQPSGDIERLVDALVIFAPLA 182 IA FA +TT ALLTLG+D TI TLRRGLL++ + + +VD V AP A Sbjct: 127 IACFAALTTTAALLTLGSDASTIADTLRRGLLRITNVRDTASGDRASEVVDVFVAIAPAA 186 Query: 183 ATVISMVTLTLNLWLAGKITQTSGRLNRPWPEFRSTALPAMTLLALIVAVGASFVGGMLA 242 A I+M TLTLN+WLA K+T TSGRL RPWP+ R+ LP M L+A +VA+ F+GG+ A Sbjct: 187 AATIAMATLTLNVWLAAKVTATSGRLRRPWPDVRTMTLPPMALVATMVALALCFIGGLPA 246 Query: 243 LLAQIVTTALVIAYALVGFAVLHTLTLSLTNRGFWLGGIYAVVAMFGWPIVAMFALGIAD 302 +LAQIVT L++ YALVGFAVLHT+TL++ NRG WLG +YA+V MF WP++ + +GIAD Sbjct: 247 ILAQIVTACLMMTYALVGFAVLHTITLTMRNRGLWLGSVYAIVLMFVWPVITIVGIGIAD 306 Query: 303 AVFGLRQRYL-RTRPPPL 319 A+FG RQRY+ R PPP+ Sbjct: 307 AIFGFRQRYMQRHTPPPI 324