BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0044.0021.p (154 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002289349.1| 30S ribosomal protein S6 (RRP-S6) [Oligotrop... 227 5e-58 ref|YP_004108675.1| 30S ribosomal protein S6 [Rhodopseudomonas p... 215 2e-54 ref|NP_948416.1| 30S ribosomal protein S6 [Rhodopseudomonas palu... 214 3e-54 ref|YP_532169.1| 30S ribosomal protein S6 [Rhodopseudomonas palu... 209 1e-52 ref|YP_577607.1| 30S ribosomal protein S6 [Nitrobacter hamburgen... 206 1e-51 >ref|YP_002289349.1| 30S ribosomal protein S6 (RRP-S6) [Oligotropha carboxidovorans OM5] ref|YP_004632628.1| 30S ribosomal protein S6 [Oligotropha carboxidovorans OM5] sp|B6JGN7.1|RS6_OLICO RecName: Full=30S ribosomal protein S6 gb|ACI93484.1| 30S ribosomal protein S6 (RRP-S6) [Oligotropha carboxidovorans OM5] gb|AEI02811.1| 30S ribosomal protein S6 [Oligotropha carboxidovorans OM4] gb|AEI06387.1| 30S ribosomal protein S6 [Oligotropha carboxidovorans OM5] Length = 144 Score = 227 bits (578), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 114/156 (73%), Positives = 129/156 (82%), Gaps = 14/156 (8%) Query: 1 MPLYEHVFLARQDASTQQVDELTAQMTGIVEQGGGKVTKTESWGVRSLTYRMNKNRKAHF 60 MP YEHVFLARQDAS QQV+ELT Q+TG++E GGKVTKTESWGVRSLTYR+ KNRKAHF Sbjct: 1 MPYYEHVFLARQDASAQQVEELTTQITGVIEGLGGKVTKTESWGVRSLTYRIQKNRKAHF 60 Query: 61 VLMNIDAPSAVVTEIERQERINEDVIRYLTVRVEEHEEGPSAMMRKADRDRERDDRGGGF 120 VL+NID P+ +V E+ERQERINED+IRYLTVRV+E EEGPSAMMRKADRDRERD+RG Sbjct: 61 VLLNIDGPATIVAEVERQERINEDIIRYLTVRVDELEEGPSAMMRKADRDRERDERG--- 117 Query: 121 RGDREGGFRGDREGGFRGDRGPRRPRDEE--AATEE 154 G REGGFR +RGPRRPR+EE A+ EE Sbjct: 118 ---------GPREGGFRSERGPRRPREEETTASVEE 144 >ref|YP_004108675.1| 30S ribosomal protein S6 [Rhodopseudomonas palustris DX-1] gb|ADU43942.1| ribosomal protein S6 [Rhodopseudomonas palustris DX-1] Length = 158 Score = 215 bits (548), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 117/137 (85%), Positives = 126/137 (91%), Gaps = 5/137 (3%) Query: 1 MPLYEHVFLARQDASTQQVDELTAQMTGIVEQGGGKVTKTESWGVRSLTYRMNKNRKAHF 60 MPLYEHVFLARQDAS QQV+ELT Q+TG++E GGKVTKTESWG+RSLTYRMNKNRKAHF Sbjct: 1 MPLYEHVFLARQDASAQQVEELTTQITGVIESLGGKVTKTESWGLRSLTYRMNKNRKAHF 60 Query: 61 VLMNIDAPSAVVTEIERQERINEDVIRYLTVRVEEHEEGPSAMMRKADRDRERDDRG--- 117 VL+NID P+AVV EIERQERINEDVIRYLTVRV+EHEEGPSAMMRKADRDRERDDRG Sbjct: 61 VLLNIDGPAAVVAEIERQERINEDVIRYLTVRVDEHEEGPSAMMRKADRDRERDDRGPRE 120 Query: 118 GGFRGDREGGFRGDREG 134 GGFRGDREG RGDR+G Sbjct: 121 GGFRGDREG--RGDRDG 135 >ref|NP_948416.1| 30S ribosomal protein S6 [Rhodopseudomonas palustris CGA009] ref|YP_001992463.1| 30S ribosomal protein S6 [Rhodopseudomonas palustris TIE-1] sp|Q6N5A4.1|RS6_RHOPA RecName: Full=30S ribosomal protein S6; AltName: Full=RRP-S6 sp|B3Q9T5.1|RS6_RHOPT RecName: Full=30S ribosomal protein S6 emb|CAE28518.1| possible 30S ribosomal protein S6 [Rhodopseudomonas palustris CGA009] gb|ACF01988.1| ribosomal protein S6 [Rhodopseudomonas palustris TIE-1] Length = 158 Score = 214 bits (546), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 117/137 (85%), Positives = 127/137 (92%), Gaps = 5/137 (3%) Query: 1 MPLYEHVFLARQDASTQQVDELTAQMTGIVEQGGGKVTKTESWGVRSLTYRMNKNRKAHF 60 MPLYEHVFLARQDAS QQV+ELT Q+TG++E GGKVTKTESWG+RSLTYRMNKNRKAHF Sbjct: 1 MPLYEHVFLARQDASAQQVEELTTQITGVIEGLGGKVTKTESWGLRSLTYRMNKNRKAHF 60 Query: 61 VLMNIDAPSAVVTEIERQERINEDVIRYLTVRVEEHEEGPSAMMRKADRDRERDDRG--- 117 VL+NID P+AVV+EIERQERINEDVIRYLTVRV+EHEEGPSAMMRKADRDRERDDRG Sbjct: 61 VLLNIDGPAAVVSEIERQERINEDVIRYLTVRVDEHEEGPSAMMRKADRDRERDDRGPRE 120 Query: 118 GGFRGDREGGFRGDREG 134 GGFRGDREG RGDR+G Sbjct: 121 GGFRGDREG--RGDRDG 135 >ref|YP_532169.1| 30S ribosomal protein S6 [Rhodopseudomonas palustris BisB18] sp|Q215T6.1|RS6_RHOPB RecName: Full=30S ribosomal protein S6 gb|ABD87850.1| SSU ribosomal protein S6P [Rhodopseudomonas palustris BisB18] Length = 168 Score = 209 bits (532), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 117/143 (81%), Positives = 126/143 (88%), Gaps = 8/143 (5%) Query: 1 MPLYEHVFLARQDASTQQVDELTAQMTGIVEQGGGKVTKTESWGVRSLTYRMNKNRKAHF 60 MPLYEHVFLARQDASTQQV+ELT Q+T ++E GGKV K ESWGVRSLTYRM+KNRKAHF Sbjct: 1 MPLYEHVFLARQDASTQQVEELTTQITSVIEGLGGKVVKMESWGVRSLTYRMHKNRKAHF 60 Query: 61 VLMNIDAPSAVVTEIERQERINEDVIRYLTVRVEEHEEGPSAMMRKADRDRERDDRG--- 117 VL+NID PSAVV E+ERQERINEDVIRYLTVRV+E EEGPSAMMRKADRDR+RDDRG Sbjct: 61 VLLNIDGPSAVVAEVERQERINEDVIRYLTVRVDELEEGPSAMMRKADRDRDRDDRGGFR 120 Query: 118 ----GGFRGDREGGFR-GDREGG 135 GGFRGDREGGFR GDREGG Sbjct: 121 GDREGGFRGDREGGFRGGDREGG 143 >ref|YP_577607.1| 30S ribosomal protein S6 [Nitrobacter hamburgensis X14] sp|Q1QKV0.1|RS6_NITHX RecName: Full=30S ribosomal protein S6 gb|ABE63147.1| SSU ribosomal protein S6P [Nitrobacter hamburgensis X14] Length = 147 Score = 206 bits (523), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 110/128 (85%), Positives = 122/128 (95%) Query: 1 MPLYEHVFLARQDASTQQVDELTAQMTGIVEQGGGKVTKTESWGVRSLTYRMNKNRKAHF 60 MPLYEHVFLARQDAS+QQV+ELT Q+TG++ GGKVTKTE+WGVRSLTYRM KNRKAHF Sbjct: 1 MPLYEHVFLARQDASSQQVEELTNQITGVITGLGGKVTKTENWGVRSLTYRMKKNRKAHF 60 Query: 61 VLMNIDAPSAVVTEIERQERINEDVIRYLTVRVEEHEEGPSAMMRKADRDRERDDRGGGF 120 VL+NID P+AVV+EIERQERI+EDVIRYL++RVEEHEEGPSAMMRKADRDRERDDRGGGF Sbjct: 61 VLLNIDGPAAVVSEIERQERIHEDVIRYLSIRVEEHEEGPSAMMRKADRDRERDDRGGGF 120 Query: 121 RGDREGGF 128 RGDREGGF Sbjct: 121 RGDREGGF 128