BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0044.0012.p (416 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770726.1| hypothetical protein blr4086 [Bradyrhizobium ja... 674 0.0 ref|YP_782216.1| aminodeoxychorismate lyase [Rhodopseudomonas pa... 653 0.0 ref|YP_001205340.1| hypothetical protein BRADO3315 [Bradyrhizobi... 643 0.0 ref|YP_532176.1| aminodeoxychorismate lyase [Rhodopseudomonas pa... 639 0.0 ref|YP_318298.1| aminodeoxychorismate lyase [Nitrobacter winogra... 633 e-179 >ref|NP_770726.1| hypothetical protein blr4086 [Bradyrhizobium japonicum USDA 110] dbj|BAC49351.1| blr4086 [Bradyrhizobium japonicum USDA 110] Length = 425 Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/427 (81%), Positives = 379/427 (88%), Gaps = 13/427 (3%) Query: 1 MSERPPISPRSPRAALEPEQLPPPPKRSDRARNPFVIVGNAIFTILIILMIGAGATYYYG 60 MSERPPISPRSPRAALEPEQ+PPPPKRSDRARNPFVIVGNAI T+L+I MIGAGA YYYG Sbjct: 1 MSERPPISPRSPRAALEPEQVPPPPKRSDRARNPFVIVGNAIITLLLISMIGAGAVYYYG 60 Query: 61 KQALESPGPLQEDKIVNIPARAGKRDIADVLSREGVINVNPWVFIGGVFALKASSDLKPG 120 +Q LE+PGPL+EDKIVNIP RAGKRDIA+ L+REGV +VNPWVFI V ALKASSDLKPG Sbjct: 61 RQVLEAPGPLKEDKIVNIPQRAGKRDIAETLNREGVTDVNPWVFIASVAALKASSDLKPG 120 Query: 121 EYSFQKNASLRDVIATIVDGKVVQHAITIPEGLTSEQIVTRLSDNDIFTGSVREIPREGT 180 EYSFQKNASLRDVIATIV+GKVVQHA+TIPEGLTSEQIV RLSDNDIFTGSVRE+PREGT Sbjct: 121 EYSFQKNASLRDVIATIVEGKVVQHAVTIPEGLTSEQIVARLSDNDIFTGSVRELPREGT 180 Query: 181 LLPETYKFPRGTTRDQVIQRLQQAQKRVLAEIWERRNTDTPLKSPDQLVTLASIVEKETG 240 LLPETYKFPRGTTR+QVIQR+QQA KRVL EIWERR+ D P+K+P+QLVTLASIVEKETG Sbjct: 181 LLPETYKFPRGTTREQVIQRMQQAHKRVLTEIWERRSQDIPVKTPEQLVTLASIVEKETG 240 Query: 241 RADERSRVAAVFVNRLRQRMKLQSDPTIIYGLVGGKGTLGRPIKRSEITQPSPYNTYVID 300 + DERSRVAAVFVNRL+Q++KLQSDPTIIYGLVGGKGTLGRPIKRSEITQPSPYNTYVI+ Sbjct: 241 KPDERSRVAAVFVNRLKQKIKLQSDPTIIYGLVGGKGTLGRPIKRSEITQPSPYNTYVIE 300 Query: 301 GLPPGPIANPGRASLEATANPARTRDLFFVADGTGGHAFTETYDQHAKNVAKLRASEKQI 360 GLPPGPI+NPGRASLEA ANPARTRDL+FVADGTGGHAFTETYD H KNVAKLRA EKQI Sbjct: 301 GLPPGPISNPGRASLEAAANPARTRDLYFVADGTGGHAFTETYDAHQKNVAKLRAMEKQI 360 Query: 361 QNDTVEPADDPAPAAAAPGADTN-PTATTP-KPTNQKK---------PPRGRQGAAQQTN 409 QNDTVEPA+D P AAA + PTATTP +P QKK P RQGA Q Sbjct: 361 QNDTVEPAEDAQPPAAAAPGAADTPTATTPARPNQQKKPPAAPRPAGPAPARQGAVQP-- 418 Query: 410 SPPVVQR 416 SPPV+QR Sbjct: 419 SPPVIQR 425 >ref|YP_782216.1| aminodeoxychorismate lyase [Rhodopseudomonas palustris BisA53] gb|ABJ07236.1| aminodeoxychorismate lyase [Rhodopseudomonas palustris BisA53] Length = 418 Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/421 (77%), Positives = 368/421 (87%), Gaps = 10/421 (2%) Query: 1 MSERPPISPRSPRAALEPEQLPPPPKRSDRARNPFVIVGNAIFTILIILMIGAGATYYYG 60 MSERPPISPRSPRAALEPEQ+PPPPKRSDRARNP+V+VGNAI T L++LMIG+G Y YG Sbjct: 1 MSERPPISPRSPRAALEPEQVPPPPKRSDRARNPWVVVGNAIITGLVVLMIGSGGIYVYG 60 Query: 61 KQALESPGPLQEDKIVNIPARAGKRDIADVLSREGVINVNPWVFIGGVFALKASSDLKPG 120 KQ +E+PGPL++DKIVNIP RAG DIAD+L REGV ++N W FIG V ALKA SDLKPG Sbjct: 61 KQKIEAPGPLRDDKIVNIPQRAGITDIADILRREGVTDINRWGFIGSVIALKARSDLKPG 120 Query: 121 EYSFQKNASLRDVIATIVDGKVVQHAITIPEGLTSEQIVTRLSDNDIFTGSVREIPREGT 180 EY+FQKNASL DVIATIV+GKVVQHA+TIPEGLTSEQI+ RL++N+IFTGSV E+PREGT Sbjct: 121 EYAFQKNASLADVIATIVEGKVVQHAVTIPEGLTSEQILARLAENEIFTGSVHEVPREGT 180 Query: 181 LLPETYKFPRGTTRDQVIQRLQQAQKRVLAEIWERRNTDTPLKSPDQLVTLASIVEKETG 240 LLPETYKFPRGTTR+QV+QR+QQ QKRVL+EIWERRN D P+K+P+QL+TLASIVEKETG Sbjct: 181 LLPETYKFPRGTTREQVVQRMQQTQKRVLSEIWERRNPDIPVKTPEQLITLASIVEKETG 240 Query: 241 RADERSRVAAVFVNRLRQRMKLQSDPTIIYGLVGGKGTLGRPIKRSEITQPSPYNTYVID 300 R DERSRVAAVFVNRLR +MKLQSDPTIIYGLVGG+GTLGRPIKRSEITQPSPYNTYV++ Sbjct: 241 RPDERSRVAAVFVNRLRLKMKLQSDPTIIYGLVGGRGTLGRPIKRSEITQPSPYNTYVVE 300 Query: 301 GLPPGPIANPGRASLEATANPARTRDLFFVADGTGGHAFTETYDQHAKNVAKLRASEKQI 360 GLPPGPIANPGRASLEA ANPARTRDLFFVADGTGGH+FTETYD H KNVAKLRA E+QI Sbjct: 301 GLPPGPIANPGRASLEAAANPARTRDLFFVADGTGGHSFTETYDLHQKNVAKLRAIERQI 360 Query: 361 QNDTVEPADDPAPAAAAPGADT-----NPTATTP-KPTNQKKPPRGRQGAAQQTNSPPVV 414 QNDTVEPA++ APA +A GA T N A P KP QK R R AA++ ++PP Sbjct: 361 QNDTVEPAEE-APATSAIGATTPPEVPNANAAVPAKPAPQK---RARPAAAKRNSAPPTA 416 Query: 415 Q 415 + Sbjct: 417 E 417 >ref|YP_001205340.1| hypothetical protein BRADO3315 [Bradyrhizobium sp. ORS 278] emb|CAL77109.1| conserved hypothetical protein; putative Aminodeoxychorismate lyase family [Bradyrhizobium sp. ORS 278] Length = 405 Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust. Identities = 324/413 (78%), Positives = 356/413 (86%), Gaps = 25/413 (6%) Query: 21 LPPPPKRSDRARNPFVIVGNAIFTILIILMIGAGATYYYGKQALESPGPLQEDKIVNIPA 80 +PPPP+RSDRARNPFV+VGNAI T+LI+ MIGAGA YYYG+Q LE+PGPLQ+DKIVNIP Sbjct: 1 MPPPPRRSDRARNPFVVVGNAIITLLILAMIGAGAAYYYGRQILEAPGPLQDDKIVNIPQ 60 Query: 81 RAGKRDIADVLSREGVINVNPWVFIGGVFALKASSDLKPGEYSFQKNASLRDVIATIVDG 140 RAGKRDIADVL+REGVI+VNPW+FIGGV+ALKASSDLKPGEY+FQKNASLRDVI IV+G Sbjct: 61 RAGKRDIADVLAREGVIDVNPWIFIGGVYALKASSDLKPGEYAFQKNASLRDVIGVIVEG 120 Query: 141 KVVQHAITIPEGLTSEQIVTRLSDNDIFTGSVREIPREGTLLPETYKFPRGTTRDQVIQR 200 KVVQH +TIPEGLTSEQIV RLSDNDIFTGSVREIPREGTLLPETYKFPRGT+RDQVIQR Sbjct: 121 KVVQHGVTIPEGLTSEQIVARLSDNDIFTGSVREIPREGTLLPETYKFPRGTSRDQVIQR 180 Query: 201 LQQAQKRVLAEIWERRNTDTPLKSPDQLVTLASIVEKETGRADERSRVAAVFVNRLRQRM 260 +QQAQKRVLA+IWERR+ D P+K+P+QLVTLASIVEKETG+ DERSRVAAVFVNRL+QR+ Sbjct: 181 MQQAQKRVLADIWERRSPDLPVKTPEQLVTLASIVEKETGKPDERSRVAAVFVNRLKQRI 240 Query: 261 KLQSDPTIIYGLVGGKGTLGRPIKRSEITQPSPYNTYVIDGLPPGPIANPGRASLEATAN 320 KLQSDPTIIYGLVGGKGTLGRPIKRSEITQPSPYNTYVI+GLPPGPI+NPGRASLEATAN Sbjct: 241 KLQSDPTIIYGLVGGKGTLGRPIKRSEITQPSPYNTYVIEGLPPGPISNPGRASLEATAN 300 Query: 321 PARTRDLFFVADGTGGHAFTETYDQHAKNVAKLRASEKQIQNDTVEPADDPAPAAAAPGA 380 PARTRDL+FVADGTGGHAFTETYD H KNVAKLRA E+Q QNDTVEP + P PA A Sbjct: 301 PARTRDLYFVADGTGGHAFTETYDLHQKNVAKLRAMERQTQNDTVEPEEAP-PAVAGGAV 359 Query: 381 DTN-----------------PTATTPKPTNQKKPPRGRQGAAQQTNSPPVVQR 416 D+ P AT P N RQGAAQ T PPVVQ+ Sbjct: 360 DSAAPATPPRPPVGAKKPPAPRATGAAPANGP-----RQGAAQPT--PPVVQQ 405 >ref|YP_532176.1| aminodeoxychorismate lyase [Rhodopseudomonas palustris BisB18] gb|ABD87857.1| aminodeoxychorismate lyase [Rhodopseudomonas palustris BisB18] Length = 422 Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust. Identities = 302/366 (82%), Positives = 339/366 (92%) Query: 1 MSERPPISPRSPRAALEPEQLPPPPKRSDRARNPFVIVGNAIFTILIILMIGAGATYYYG 60 MSERPPISP+SPRAALEPEQ+PPPPKRSDRARNP V++GNAI T+++++MIG G Y YG Sbjct: 1 MSERPPISPKSPRAALEPEQVPPPPKRSDRARNPLVVIGNAIITVVLVVMIGTGGIYVYG 60 Query: 61 KQALESPGPLQEDKIVNIPARAGKRDIADVLSREGVINVNPWVFIGGVFALKASSDLKPG 120 KQ +E+PGPLQ+DKIVNIP RAG DI D+L REGVI+ N W FIG VFALKA +DLKPG Sbjct: 61 KQKIEAPGPLQDDKIVNIPQRAGMGDIGDILQREGVIDNNRWAFIGSVFALKARADLKPG 120 Query: 121 EYSFQKNASLRDVIATIVDGKVVQHAITIPEGLTSEQIVTRLSDNDIFTGSVREIPREGT 180 EYSFQKNASLRDVIATIV+GKVVQHA+TIPEGLTSEQI+ RL++NDIF+G+VRE+PREGT Sbjct: 121 EYSFQKNASLRDVIATIVEGKVVQHAVTIPEGLTSEQILARLTENDIFSGNVREMPREGT 180 Query: 181 LLPETYKFPRGTTRDQVIQRLQQAQKRVLAEIWERRNTDTPLKSPDQLVTLASIVEKETG 240 LLPETYKFPRGTTR+ VI R+QQAQKRVLAEIWERRN D P+K+P+QLVTLASIVEKETG Sbjct: 181 LLPETYKFPRGTTRESVIVRMQQAQKRVLAEIWERRNPDVPVKTPEQLVTLASIVEKETG 240 Query: 241 RADERSRVAAVFVNRLRQRMKLQSDPTIIYGLVGGKGTLGRPIKRSEITQPSPYNTYVID 300 +ADERSRVAAV+VNRLRQ+MKLQSDPTIIYGLVGGKGTLGRPIKRSEI QPSPYNTYV++ Sbjct: 241 KADERSRVAAVYVNRLRQKMKLQSDPTIIYGLVGGKGTLGRPIKRSEIIQPSPYNTYVVE 300 Query: 301 GLPPGPIANPGRASLEATANPARTRDLFFVADGTGGHAFTETYDQHAKNVAKLRASEKQI 360 GLPPGPIANPGRASLEA ANPARTRDLFFVADG+GGH+FTETYDQH KNVA+LR E+QI Sbjct: 301 GLPPGPIANPGRASLEAAANPARTRDLFFVADGSGGHSFTETYDQHQKNVARLRTLERQI 360 Query: 361 QNDTVE 366 QNDTVE Sbjct: 361 QNDTVE 366 >ref|YP_318298.1| aminodeoxychorismate lyase [Nitrobacter winogradskyi Nb-255] gb|ABA04946.1| aminodeoxychorismate lyase [Nitrobacter winogradskyi Nb-255] Length = 407 Score = 633 bits (1633), Expect = e-179, Method: Compositional matrix adjust. Identities = 312/402 (77%), Positives = 350/402 (87%), Gaps = 1/402 (0%) Query: 1 MSERPPISPRSPRAALEPEQLPPPPKRSDRARNPFVIVGNAIFTILIILMIGAGATYYYG 60 M+ERPPISPRSPRAALEPEQ+PPPPKRS R R+P V+ GNAI T+L+I M+G G YG Sbjct: 1 MTERPPISPRSPRAALEPEQVPPPPKRSARVRSPLVVAGNAIITVLLIGMLGVGGVLVYG 60 Query: 61 KQALESPGPLQEDKIVNIPARAGKRDIADVLSREGVINVNPWVFIGGVFALKASSDLKPG 120 KQ +E+PGPLQE+KIVNIP+RAG DIAD+L REGVI+ N W FIGGVFALKA +DLKPG Sbjct: 61 KQKIEAPGPLQEEKIVNIPSRAGMNDIADILQREGVIDSNRWAFIGGVFALKARADLKPG 120 Query: 121 EYSFQKNASLRDVIATIVDGKVVQHAITIPEGLTSEQIVTRLSDNDIFTGSVREIPREGT 180 EY+FQKNASLR+VI TIVDGKVVQH +TIPEGLTSEQI R+S+N+IF+G++REIPREGT Sbjct: 121 EYAFQKNASLREVIGTIVDGKVVQHPMTIPEGLTSEQIAARISENEIFSGTLREIPREGT 180 Query: 181 LLPETYKFPRGTTRDQVIQRLQQAQKRVLAEIWERRNTDTPLKSPDQLVTLASIVEKETG 240 LLPETYKFPRGT+RDQVIQR+QQ QKRVLAEIWERR +D P+K+P+QLVTLASI+EKETG Sbjct: 181 LLPETYKFPRGTSRDQVIQRMQQTQKRVLAEIWERRASDVPVKTPEQLVTLASIIEKETG 240 Query: 241 RADERSRVAAVFVNRLRQRMKLQSDPTIIYGLVGGKGTLGRPIKRSEITQPSPYNTYVID 300 +ADERSRVAAVFVNRL+QRMKLQSDPTIIYGLVGGKGTLGRPIKRSEI SPYNTYVID Sbjct: 241 KADERSRVAAVFVNRLKQRMKLQSDPTIIYGLVGGKGTLGRPIKRSEIMHASPYNTYVID 300 Query: 301 GLPPGPIANPGRASLEATANPARTRDLFFVADGTGGHAFTETYDQHAKNVAKLRASEKQI 360 GLPPGPIANPGRASLEA ANPARTRDLFFVADG+GGH+FTETY+QH KNVA+LRA EKQI Sbjct: 301 GLPPGPIANPGRASLEAAANPARTRDLFFVADGSGGHSFTETYEQHQKNVARLRAMEKQI 360 Query: 361 QNDTVEPADDPAPAAAAPGADTNPTATTPKPTNQKKP-PRGR 401 QND VEP DDP PAAA ++ T P KP PR R Sbjct: 361 QNDAVEPIDDPPPAAAPTATESGATRDEPSSKPAPKPAPRTR 402