BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0044.0006.p (284 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770742.1| dimethyladenosine transferase [Bradyrhizobium j... 488 e-136 ref|YP_532181.1| dimethyladenosine transferase [Rhodopseudomonas... 476 e-132 ref|YP_577597.1| dimethyladenosine transferase [Nitrobacter hamb... 473 e-131 ref|YP_001239808.1| dimethyladenosine transferase [Bradyrhizobiu... 473 e-131 ref|YP_782210.1| dimethyladenosine transferase [Rhodopseudomonas... 471 e-131 >ref|NP_770742.1| dimethyladenosine transferase [Bradyrhizobium japonicum USDA 110] sp|Q89MU0.1|RSMA_BRAJA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase dbj|BAC49367.1| rRNA-adenine N6,N6-dimethyltransferase [Bradyrhizobium japonicum USDA 110] Length = 284 Score = 488 bits (1255), Expect = e-136, Method: Compositional matrix adjust. Identities = 234/282 (82%), Positives = 262/282 (92%) Query: 1 VSAIDDLPPLRDIIREHSLSARKSLGQNFLLDLNLTARIARAAGPLEDSTVIEVGPGPGG 60 +SAIDDLPPLR++IR+H+LSARKSLGQNFLLDLNLTARIARAA PL++ST++E+GPGPGG Sbjct: 1 MSAIDDLPPLREVIRQHALSARKSLGQNFLLDLNLTARIARAAAPLDNSTIVEIGPGPGG 60 Query: 61 LTRALLALGARRVIAIERDERALAALDYVAKRYPGRIEIVHGDAQRFDPRPLLDGAKAKI 120 LTRALLALGARRV+AIE DERA+ AL ++ RYPGR+EIVHGDA FDPRPLL+G AKI Sbjct: 61 LTRALLALGARRVVAIEHDERAIPALQDISARYPGRLEIVHGDAMTFDPRPLLNGESAKI 120 Query: 121 IANLPYNIATQLLVDWLSIEPWPPWYDMMVLMFQREVAERIVAHEDEEAYGRLAVLANWR 180 +ANLPYNIATQLL++WL+ EPWPPWYDMMVLMFQREV ERIVA EDEEAYGRL VLANWR Sbjct: 121 VANLPYNIATQLLINWLTTEPWPPWYDMMVLMFQREVGERIVAREDEEAYGRLGVLANWR 180 Query: 181 AETKILFDISPAAFVPQPKVTSSVVRLIPRAAPEPCDRRMLEQVAAAAFGQRRKMLRQSL 240 ETKILFDI+P+AFVP PKVTSSVVRL+PRA P PCDR+MLEQVAAAAFGQRRKMLRQSL Sbjct: 181 CETKILFDIAPSAFVPPPKVTSSVVRLVPRAEPLPCDRKMLEQVAAAAFGQRRKMLRQSL 240 Query: 241 KSLSVDPARLAAAAGIDATRRAETIPVAGFVAMARELADIRA 282 KSL VDPARLA AAG+DATRRAETIP++GFVAMARELADIR+ Sbjct: 241 KSLGVDPARLAQAAGVDATRRAETIPISGFVAMARELADIRS 282 >ref|YP_532181.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisB18] sp|Q215S4.1|RSMA_RHOPB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gb|ABD87862.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisB18] Length = 286 Score = 476 bits (1225), Expect = e-132, Method: Compositional matrix adjust. Identities = 237/284 (83%), Positives = 255/284 (89%) Query: 1 VSAIDDLPPLRDIIREHSLSARKSLGQNFLLDLNLTARIARAAGPLEDSTVIEVGPGPGG 60 +S IDDLPPLRD+I+ H LSARKSLGQNFLLDLNL RIARAAGPL+ +TVIE+GPGPGG Sbjct: 1 MSGIDDLPPLRDVIKRHDLSARKSLGQNFLLDLNLLTRIARAAGPLDGATVIEIGPGPGG 60 Query: 61 LTRALLALGARRVIAIERDERALAALDYVAKRYPGRIEIVHGDAQRFDPRPLLDGAKAKI 120 LTRALLALGA +VIAIERDERAL AL +A YPGR+EIV DA +DPRPLL GA+AKI Sbjct: 61 LTRALLALGAAKVIAIERDERALGALQEIAAHYPGRLEIVCADATIYDPRPLLGGARAKI 120 Query: 121 IANLPYNIATQLLVDWLSIEPWPPWYDMMVLMFQREVAERIVAHEDEEAYGRLAVLANWR 180 +ANLPYNIAT LL+ WLSIEPWPPWYD MVLMFQREVAERIVA ED+EAYGRLAVLANWR Sbjct: 121 VANLPYNIATPLLIGWLSIEPWPPWYDTMVLMFQREVAERIVAREDDEAYGRLAVLANWR 180 Query: 181 AETKILFDISPAAFVPQPKVTSSVVRLIPRAAPEPCDRRMLEQVAAAAFGQRRKMLRQSL 240 AETK+LFDISPAAFVPQPKVTSSVVRL+PR PEPCDRRMLEQVAAAAFGQRRKMLRQSL Sbjct: 181 AETKLLFDISPAAFVPQPKVTSSVVRLVPRETPEPCDRRMLEQVAAAAFGQRRKMLRQSL 240 Query: 241 KSLSVDPARLAAAAGIDATRRAETIPVAGFVAMARELADIRATK 284 K L VDPARLAAAAG+D TRRAETI V+GFVAMAREL DIRA K Sbjct: 241 KPLGVDPARLAAAAGVDPTRRAETIAVSGFVAMARELTDIRAIK 284 >ref|YP_577597.1| dimethyladenosine transferase [Nitrobacter hamburgensis X14] sp|Q1QKW0.1|RSMA_NITHX RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gb|ABE63137.1| dimethyladenosine transferase [Nitrobacter hamburgensis X14] Length = 287 Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust. Identities = 228/281 (81%), Positives = 257/281 (91%) Query: 1 VSAIDDLPPLRDIIREHSLSARKSLGQNFLLDLNLTARIARAAGPLEDSTVIEVGPGPGG 60 +S IDDLPPLRD+I+ H+LSARKSLGQNFLLDLNLTARIARAAGPLED+TVIE+GPGPGG Sbjct: 1 MSTIDDLPPLRDVIKRHALSARKSLGQNFLLDLNLTARIARAAGPLEDATVIEIGPGPGG 60 Query: 61 LTRALLALGARRVIAIERDERALAALDYVAKRYPGRIEIVHGDAQRFDPRPLLDGAKAKI 120 LTRALLA+GA+RVIAIERD RAL AL+ ++ RYPGR+ IV+ DA +FD RPLL +AKI Sbjct: 61 LTRALLAMGAQRVIAIERDARALGALEEISGRYPGRLTIVNADATQFDSRPLLGTTRAKI 120 Query: 121 IANLPYNIATQLLVDWLSIEPWPPWYDMMVLMFQREVAERIVAHEDEEAYGRLAVLANWR 180 +ANLPYNIAT LL+DWLS+EPWPPWYD MVLMFQREVAERIVA E+EEAYGRLAVL+NWR Sbjct: 121 VANLPYNIATALLIDWLSVEPWPPWYDTMVLMFQREVAERIVARENEEAYGRLAVLSNWR 180 Query: 181 AETKILFDISPAAFVPQPKVTSSVVRLIPRAAPEPCDRRMLEQVAAAAFGQRRKMLRQSL 240 AETKILFDISPAAFVPQPK+TSSVVRL+PR PE C+RR+LEQVAAAAFGQRRKMLRQSL Sbjct: 181 AETKILFDISPAAFVPQPKITSSVVRLVPRDKPETCERRLLEQVAAAAFGQRRKMLRQSL 240 Query: 241 KSLSVDPARLAAAAGIDATRRAETIPVAGFVAMARELADIR 281 KSL DPARL AAAGI+ T+RAET+P++GF AMARELADIR Sbjct: 241 KSLPADPARLTAAAGIEPTQRAETVPISGFAAMARELADIR 281 >ref|YP_001239808.1| dimethyladenosine transferase [Bradyrhizobium sp. BTAi1] sp|A5EIA8.1|RSMA_BRASB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gb|ABQ35902.1| dimethyladenosine transferase [Bradyrhizobium sp. BTAi1] Length = 286 Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust. Identities = 232/281 (82%), Positives = 253/281 (90%) Query: 1 VSAIDDLPPLRDIIREHSLSARKSLGQNFLLDLNLTARIARAAGPLEDSTVIEVGPGPGG 60 +SAIDDLPPLR++IREH LSARK+LGQNFLLDLNLTARIARAAGPLED+TV+E+GPGPGG Sbjct: 1 MSAIDDLPPLREVIREHQLSARKALGQNFLLDLNLTARIARAAGPLEDATVVEIGPGPGG 60 Query: 61 LTRALLALGARRVIAIERDERALAALDYVAKRYPGRIEIVHGDAQRFDPRPLLDGAKAKI 120 LTRALLALGAR VIA+E DERA+ AL +A+RYPGR+EIV DA+ FD RP L KAKI Sbjct: 61 LTRALLALGARHVIAVEHDERAIPALQAIAERYPGRLEIVCTDARTFDVRPYLGSTKAKI 120 Query: 121 IANLPYNIATQLLVDWLSIEPWPPWYDMMVLMFQREVAERIVAHEDEEAYGRLAVLANWR 180 +ANLPYNIAT LL+ WLS EPWPPWYDMMVLMFQREVAERIVA E+EEAYGRL VLANWR Sbjct: 121 VANLPYNIATHLLIGWLSAEPWPPWYDMMVLMFQREVAERIVARENEEAYGRLGVLANWR 180 Query: 181 AETKILFDISPAAFVPQPKVTSSVVRLIPRAAPEPCDRRMLEQVAAAAFGQRRKMLRQSL 240 ETKILFDISP+AFVP PKVTSSVVRL+PR APEPCDRR LEQVAAAAFGQRRKMLRQSL Sbjct: 181 CETKILFDISPSAFVPPPKVTSSVVRLVPRTAPEPCDRRALEQVAAAAFGQRRKMLRQSL 240 Query: 241 KSLSVDPARLAAAAGIDATRRAETIPVAGFVAMARELADIR 281 KSL DPARLAAAAG+D TRRAETIPV+GFVAMAREL + R Sbjct: 241 KSLPTDPARLAAAAGVDPTRRAETIPVSGFVAMARELTNSR 281 >ref|YP_782210.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisA53] sp|Q07LF4.1|RSMA_RHOP5 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gb|ABJ07230.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisA53] Length = 287 Score = 471 bits (1213), Expect = e-131, Method: Compositional matrix adjust. Identities = 233/284 (82%), Positives = 255/284 (89%) Query: 1 VSAIDDLPPLRDIIREHSLSARKSLGQNFLLDLNLTARIARAAGPLEDSTVIEVGPGPGG 60 +S IDDLPPLR++I+ H LSARKSLGQNFLLDLNLT RIARAAGPLEDSTVIEVGPGPGG Sbjct: 1 MSTIDDLPPLREVIQRHDLSARKSLGQNFLLDLNLTTRIARAAGPLEDSTVIEVGPGPGG 60 Query: 61 LTRALLALGARRVIAIERDERALAALDYVAKRYPGRIEIVHGDAQRFDPRPLLDGAKAKI 120 LTRALLALGA+RVIAIERDERAL AL ++ YPGR++IV DA +DPRPLL GA+AKI Sbjct: 61 LTRALLALGAKRVIAIERDERALGALAEISAHYPGRLDIVCADAMTYDPRPLLGGARAKI 120 Query: 121 IANLPYNIATQLLVDWLSIEPWPPWYDMMVLMFQREVAERIVAHEDEEAYGRLAVLANWR 180 +ANLPYNIAT LL+ WL +PWPPWYD +VLMFQREVAERIVA ED+EAYGRL VLANWR Sbjct: 121 VANLPYNIATPLLIGWLETDPWPPWYDCLVLMFQREVAERIVATEDDEAYGRLGVLANWR 180 Query: 181 AETKILFDISPAAFVPQPKVTSSVVRLIPRAAPEPCDRRMLEQVAAAAFGQRRKMLRQSL 240 A+TK+LFDISPAAFVP PKVTSSVVRLIPR PEPC+RRMLEQV AAAFGQRRKMLRQSL Sbjct: 181 AQTKMLFDISPAAFVPPPKVTSSVVRLIPRDEPEPCNRRMLEQVTAAAFGQRRKMLRQSL 240 Query: 241 KSLSVDPARLAAAAGIDATRRAETIPVAGFVAMARELADIRATK 284 KSL VDPARLAAAAG++ TRRAETIPVAGFVAMARELA+IR K Sbjct: 241 KSLGVDPARLAAAAGVEPTRRAETIPVAGFVAMARELANIRGIK 284