BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0044.0002.p (445 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001208207.1| carbohydrate porin, OprB family [Bradyrhizob... 576 e-162 ref|YP_485354.1| carbohydrate-selective porin OprB [Rhodopseudom... 508 e-142 ref|NP_770587.1| hypothetical protein blr3947 [Bradyrhizobium ja... 412 e-113 ref|NP_774677.1| hypothetical protein blr8037 [Bradyrhizobium ja... 389 e-106 ref|YP_002499905.1| carbohydrate-selective porin OprB [Methyloba... 380 e-103 >ref|YP_001208207.1| carbohydrate porin, OprB family [Bradyrhizobium sp. ORS 278] emb|CAL79992.1| putative carbohydrate porin, OprB family [Bradyrhizobium sp. ORS 278] Length = 452 Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust. Identities = 279/444 (62%), Positives = 340/444 (76%), Gaps = 2/444 (0%) Query: 3 RVISRAMLVAAALALGAPAHAEDKPVADRIADTRATLEEAGYQFSLTYIGEGFSDASGGV 62 R+ S A+ + + L + A+D+ A + + L + G QF+LTYIGE F++ GGV Sbjct: 10 RISSAALALLITMTLSSETRADDRAAAGGQTEVQKQLADWGIQFNLTYIGETFANPVGGV 69 Query: 63 SNGAVYTGRLDLGTTIDLEKVMGWTGATLHANMYQIHGDGLSRSYVGNLFLVSGVESLPA 122 NGA+YTGRLD+GTTIDLEK++GW+GAT HAN YQIHGDGLSRSYVGNL LVSGVE+LPA Sbjct: 70 RNGAIYTGRLDVGTTIDLEKLVGWSGATFHANAYQIHGDGLSRSYVGNLMLVSGVEALPA 129 Query: 123 TRLYEFWIEQKLLGGKLSVRVGQQGSDVEFIDSQYDDIFINSALGWPGIVGTILPTGGPS 182 +RLYEFW+EQ LLGGKL VRVGQQ SDVEFIDS+YDD+F NSALGWPGI G ILP+GGPS Sbjct: 130 SRLYEFWVEQALLGGKLLVRVGQQPSDVEFIDSKYDDLFANSALGWPGITGIILPSGGPS 189 Query: 183 PPLAVPGIRIKANLSDRITAYLALFDGSASPPQGTDDPQILNAHGLNFRVNDPPWWIGQL 242 PPLAVPGIR+KA +D++ YLA+FDG A+PP G DPQ+ N HG+ FRV DPPW IGQL Sbjct: 190 PPLAVPGIRLKAQFTDQLVGYLAVFDGDAAPP-GPGDPQLKNPHGILFRVQDPPWVIGQL 248 Query: 243 KYKFEIGXR-LPATITGGAWYHMGSFADQRFSADGLSLADPDSSGDTRWLRRDNGIFMVY 301 +Y F++G LP TI GAWYH GSF +QRF +DG +LADP SSG +RR+ G+F V+ Sbjct: 249 RYGFDLGSTALPGTIAAGAWYHFGSFDNQRFDSDGRALADPLSSGQPARMRRNQGVFAVF 308 Query: 302 EQLLARARPDADKGVAFFMRASVSPSDRNLISTYVDGGFPFTGFSETYPDDRFGIAAIYA 361 EQLL R+ DA KG F+R SVSPSDRNLIS Y+DGG FTGFS PDD+FGIAA YA Sbjct: 309 EQLLMRSPLDAAKGAGLFVRTSVSPSDRNLISFYLDGGIQFTGFSAARPDDKFGIAATYA 368 Query: 362 RISDAARALDRDTQIFTGTPYPIRDYEAILEITYQHVVNPNFTMQPMFQYITHPGGGAVD 421 RIS R D+D Q+FTG P+RD+EAI E +Y V PN +QP+ +Y+ HPGGGAVD Sbjct: 369 RISRDVRRYDQDLQLFTGIATPVRDFEAIFEASYSFQVTPNVAVQPIVEYVIHPGGGAVD 428 Query: 422 PNDPTQTHRIKDSVVFGLRTILSY 445 PNDPTQT RI+D++VFG+RT ++ Sbjct: 429 PNDPTQTRRIRDAIVFGVRTTAAF 452 >ref|YP_485354.1| carbohydrate-selective porin OprB [Rhodopseudomonas palustris HaA2] gb|ABD06443.1| Carbohydrate-selective porin OprB [Rhodopseudomonas palustris HaA2] Length = 449 Score = 508 bits (1309), Expect = e-142, Method: Compositional matrix adjust. Identities = 242/403 (60%), Positives = 302/403 (74%), Gaps = 1/403 (0%) Query: 43 GYQFSLTYIGEGFSDASGGVSNGAVYTGRLDLGTTIDLEKVMGWTGATLHANMYQIHGDG 102 G QFS TYIGE +D SGG+ G +Y GRLDLGTT+DL+++ GW GAT HAN++QIHG+ Sbjct: 48 GVQFSATYIGETLADVSGGMRRGTIYAGRLDLGTTVDLDRLFGWHGATFHANLFQIHGNN 107 Query: 103 LSRSYVGNLFLVSGVESLPATRLYEFWIEQKLLGGKLSVRVGQQGSDVEFIDSQYDDIFI 162 LSR+YVGNL LVSG+ESLPATRLYE WIEQ +LGG LS++VGQQ +D EF+DS+Y D+F+ Sbjct: 108 LSRNYVGNLLLVSGIESLPATRLYEAWIEQSMLGGALSIKVGQQSADTEFVDSRYLDMFV 167 Query: 163 NSALGWPGIVGTILPTGGPSPPLAVPGIRIKANLSDRITAYLALFDGSASPPQGTDDPQI 222 N+ALGWPG+ G +LP+GGPSPPLAVPG+RIKA D++TA +A+FDG A+PP G DPQ Sbjct: 168 NAALGWPGLTGVVLPSGGPSPPLAVPGVRIKARFGDKLTASVAVFDGDAAPP-GPGDPQS 226 Query: 223 LNAHGLNFRVNDPPWWIGQLKYKFEIGXRLPATITGGAWYHMGSFADQRFSADGLSLADP 282 N +GL FRV+DP W IGQ+KY F G +P+ IT GAWYH G+F QRF+A G S+ADP Sbjct: 227 RNPNGLLFRVHDPAWLIGQVKYGFGNGNGMPSGITAGAWYHFGTFDSQRFTAQGSSVADP 286 Query: 283 DSSGDTRWLRRDNGIFMVYEQLLARARPDADKGVAFFMRASVSPSDRNLISTYVDGGFPF 342 SG LR D G+F VYEQ L+ + D KG R SPSDRNLIS YVD F Sbjct: 287 AGSGLPARLRGDQGVFAVYEQPLSHSAADPAKGTGLVARVLASPSDRNLISFYVDAALLF 346 Query: 343 TGFSETYPDDRFGIAAIYARISDAARALDRDTQIFTGTPYPIRDYEAILEITYQHVVNPN 402 TGFS + PDD+FG+A YARISDAARALDRD + ++G P+RD+EA++E+TY + N Sbjct: 347 TGFSPSRPDDKFGVAISYARISDAARALDRDVRRWSGIASPVRDFEAVIELTYLAQITGN 406 Query: 403 FTMQPMFQYITHPGGGAVDPNDPTQTHRIKDSVVFGLRTILSY 445 F +QP+ +Y+ HP GGA DP DP T RI+D+VV G+RT LSY Sbjct: 407 FAVQPVIEYVMHPAGGATDPFDPAGTRRIRDAVVLGIRTTLSY 449 >ref|NP_770587.1| hypothetical protein blr3947 [Bradyrhizobium japonicum USDA 110] dbj|BAC49212.1| blr3947 [Bradyrhizobium japonicum USDA 110] Length = 467 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 217/460 (47%), Positives = 286/460 (62%), Gaps = 16/460 (3%) Query: 1 MCRVISRAMLVAAALALGAPAHAEDKPVADRIA-----DTRATLEEAGYQFSLTYIGEGF 55 + R ++ L + A A A+D+ A+ +A + L G F TYI + Sbjct: 9 LLRSMAAIALACTLASTSARAGAKDESAAEWLAPKWFNEWHDGLANKGLNFGATYIADNI 68 Query: 56 SDASGGVSNGAVYTGRLDLGTTIDLEKVMGWTGATLHANMYQIHGDGLSRSYVGNLFLVS 115 + SGGV+ GA++ GRLDL DL+K++GW+G +AN + I+G GLSR+YV NL +S Sbjct: 69 GNVSGGVARGAIHFGRLDLSVDADLDKLVGWSGGRFYANAFVIYGRGLSRNYVQNLATIS 128 Query: 116 GVESLPATRLYEFWIEQKLLGGKLSVRVGQQGSDVEFIDSQYDDIFINSALGWPGIVGTI 175 +E+LP RLY + EQ G +L++R GQQ +DVEF DSQ DD+FIN GWP I + Sbjct: 129 EIEALPDQRLYNAYFEQSFFGDRLNIRAGQQAADVEFFDSQTDDLFINGTFGWPAIKASN 188 Query: 176 LPTGGPSPPLAVPGIRIKANLSDRITAYLALFDGSASPPQGTDDPQILNAHGLNFRVNDP 235 LP GGP+PP+AVPGIR+KA L+D+ITAY A+F+G S P G DPQI + HGL FRVNDP Sbjct: 189 LPAGGPAPPIAVPGIRVKAALTDQITAYAAVFNGDPSGP-GDADPQIRDHHGLAFRVNDP 247 Query: 236 PWWIGQLKYKFEI---GXRLPATITGGAWYHMGSFADQRFSADGLSLADPDSSGDTRWLR 292 PW IGQ+++ ++I G L T GAW H GSF QRF+A+GLS+ADP SG LR Sbjct: 248 PWVIGQVRFNYDIDIGGRPLAGNFTPGAWKHYGSFDSQRFTAEGLSIADPSGSGVPAKLR 307 Query: 293 RDNGIFMVYEQLLARARPDADK-------GVAFFMRASVSPSDRNLISTYVDGGFPFTGF 345 + GIF V EQ+L R D GV F R + SP DRNLI Y+DGG F GF Sbjct: 308 GNYGIFAVIEQVLYRPPEVKDNTTSASIPGVTAFGRIAYSPPDRNLIDLYLDGGIGFVGF 367 Query: 346 SETYPDDRFGIAAIYARISDAARALDRDTQIFTGTPYPIRDYEAILEITYQHVVNPNFTM 405 + P DRFG+A Y RIS+ AR LD DTQ FTG P+R E ++E+ Y+ + P + + Sbjct: 368 TPGRPLDRFGVAMAYMRISNTARILDLDTQAFTGVQSPVRSNETLIEMIYEAHIKPGWLV 427 Query: 406 QPMFQYITHPGGGAVDPNDPTQTHRIKDSVVFGLRTILSY 445 P FQY+ P GG +PNDP+ T RI D+ VFG+ T + Y Sbjct: 428 APYFQYVFRPSGGVPNPNDPSGTSRIGDAAVFGVTTTIRY 467 >ref|NP_774677.1| hypothetical protein blr8037 [Bradyrhizobium japonicum USDA 110] dbj|BAC53302.1| blr8037 [Bradyrhizobium japonicum USDA 110] Length = 513 Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust. Identities = 201/461 (43%), Positives = 286/461 (62%), Gaps = 19/461 (4%) Query: 3 RVISRAMLVAAALALGAPAHAEDKPVADRIADT---RATLEEA------------GYQFS 47 R + +M V LA GA A + K D+ AD +T+EE G +F+ Sbjct: 54 RQVVLSMSVVMLLAAGAAAQEDKKTDDDKPADPDTGESTVEEKTLGILPNPLQKYGVKFA 113 Query: 48 LTYIGEGFSDASGGVSNGAVYTGRLDLGTTIDLEKVMGWTGATLHANMYQIHGDGLSRSY 107 TYIGE F +A+GG+ GA+Y GRL+L +DL+K++G T HANM+QIHGDGLSRS Sbjct: 114 ATYIGEAFGNATGGLKQGAIYEGRLNLAVDVDLQKLVGIDKLTFHANMFQIHGDGLSRSN 173 Query: 108 VGNLFLVSGVESLPATRLYEFWIEQKLLGGKLSVRVGQQGSDVEFIDSQYDDIFINSALG 167 + N F+VSG+E+LP+TRLYE + E++ K+S++VGQ +D EF +++Y D+F N+++G Sbjct: 174 LQNFFVVSGIEALPSTRLYEAYFEKQWGAKKVSLKVGQLAADSEFFNTKYTDVFTNASMG 233 Query: 168 WPGIVGTILPTGGPSPPLAVPGIRIKANLSDRITAYLALFDGSASPPQGTDDPQILNAHG 227 WP I LP+GGPSPPLA G R+ N++D+++ +FDG + P G+ DPQ N +G Sbjct: 234 WPAITSLDLPSGGPSPPLAAMGARLLVNVTDQLSLLGGIFDGDQAGP-GSGDPQQRNRYG 292 Query: 228 LNFRVNDPPWWIGQLKYKFEIGX---RLPATITGGAWYHMGSFADQRFSADGLSLADPDS 284 +NFRVNDPP +GQ++Y + L + G W H GSFADQ+ +++G+S A P + Sbjct: 293 VNFRVNDPPLLLGQIQYAWNNKKGDPNLTGQVKLGGWRHFGSFADQQLASNGVSFAAPGT 352 Query: 285 SGDTRWLRRDNGIFMVYEQLLARARPDADKGVAFFMRASVSPSDRNLISTYVDGGFPFTG 344 S + L D G + V+EQ + R D+G+ F RA+ +P+DRNLI Y D G F G Sbjct: 353 SAEPLLLAGDIGGWAVFEQQIYRVPHSDDRGIGLFARAAGAPADRNLIDLYADAGLEFIG 412 Query: 345 FSETYPDDRFGIAAIYARISDAARALDRDTQIFTGTPYPIRDYEAILEITYQHVVNPNFT 404 + PDD+FGIAA YA +S A+ALD D + +PIR +E +L YQ+ + +T Sbjct: 413 LRDDRPDDKFGIAAGYAHVSKRAQALDADYRTLVNPSWPIRSFEGLLTAVYQYQIRDGWT 472 Query: 405 MQPMFQYITHPGGGAVDPNDPTQTHRIKDSVVFGLRTILSY 445 +QP FQYI HPGGGA P P +K++ VFGLRT L + Sbjct: 473 VQPNFQYIVHPGGGATLPVGPLAGKILKNASVFGLRTTLKF 513 >ref|YP_002499905.1| carbohydrate-selective porin OprB [Methylobacterium nodulans ORS 2060] gb|ACL59602.1| Carbohydrate-selective porin OprB [Methylobacterium nodulans ORS 2060] Length = 502 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 196/421 (46%), Positives = 263/421 (62%), Gaps = 12/421 (2%) Query: 36 RATLEEAGYQFSLTYIGEGFSDASGGVSNGAVYTGRLDLGTTIDLEKVMGWTGATLHANM 95 R+ L + G ++SLTY+GE + SGG+ GA+Y GRLDL DLE++ GW GAT H N Sbjct: 83 RSFLAKRGIEYSLTYVGEVLGNLSGGIRRGAIYEGRLDLQVDADLEQLAGWKGATFHTNF 142 Query: 96 YQIHGDGLSRSYVGNLFLVSGVESLPATRLYEFWIEQKLLGGKLSVRVGQQGSDVEFIDS 155 YQIHG GLSR Y+GNL ++SG+E+LP++RLYE WIEQKL +L +++GQ +D EFI S Sbjct: 143 YQIHGTGLSRYYIGNLDVISGIEALPSSRLYELWIEQKLFDDQLGIKIGQIAADTEFIVS 202 Query: 156 QYDDIFINSALGWPGIVGTILPTGGPSPPLAVPGIRIKANLSDRITAYLALFDGSASPP- 214 Q +F+NS G+P I G LP+GGP+ PLA P +R K + + + LF+G + P Sbjct: 203 QTATLFVNSTYGFPDITGVNLPSGGPAYPLATPAVRAKYTPNKNFSLQVGLFNGDPAGPF 262 Query: 215 -QGTD-DPQILNAHGLNFRVNDPPWWIGQLKYKFEIGX----RL----PATITGGAWYHM 264 G D DPQ N G NFRV+DPP I + Y + + RL P TIT G WYH Sbjct: 263 KPGLDPDPQRRNRTGTNFRVSDPPLLIAEAAYAYNLDSEHRGRLVIDEPGTITLGGWYHF 322 Query: 265 GSFADQRFSADGLSLADPDSSGDTRWLRRDNGIFMVYEQLLARARPDADKGVAFFMRASV 324 G F RF G SLADP ++G R R + GI+ + +Q L R D+G + F+R S Sbjct: 323 GHFGSPRFDQTGRSLADPSTTGIARRFRGNGGIYGIIDQTLFREPDKKDEGASAFIRVSG 382 Query: 325 SPSDRNLISTYVDGGFPFTGFSETYPDDRFGIAAIYARISDAARALDRDTQIFTGTPYPI 384 SP DRN++ YVD G + G DD GI+ Y+RIS + R LD DT + TG P P+ Sbjct: 383 SPGDRNVVDFYVDTGIAYKGLLPGRSDDTVGISLAYSRISQSIRGLDLDTILATGAPRPV 442 Query: 385 RDYEAILEITYQHVVNPNFTMQPMFQYITHPGGGAVDPNDPTQTHRIKDSVVFGLRTILS 444 R++EA LE+TYQ ++ P T+QP FQY+ HPGG AV+P PT RIK++ + GLR+ + Sbjct: 443 RNFEAQLEVTYQALIAPGITVQPDFQYVFHPGGNAVNPRSPT-GQRIKNAAILGLRSTIR 501 Query: 445 Y 445 Y Sbjct: 502 Y 502