BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0043.0059.p         (126 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003756299.1| cytochrome C class I [Hyphomicrobium denitri...   131   3e-29
ref|NP_773277.1| cytochrome C [Bradyrhizobium japonicum USDA 110...   129   1e-28
gb|AAD17888.1| cytochrome C2 [Bradyrhizobium japonicum]               127   4e-28
ref|YP_004675158.1| Cytochrome c class I [Hyphomicrobium sp. MC1...   116   9e-25
gb|AAT76672.1| cytochrome c precursor [Azospirillum brasilense]       104   5e-21

>ref|YP_003756299.1| cytochrome C class I [Hyphomicrobium denitrificans ATCC 51888]
 gb|ADJ23978.1| cytochrome c class I [Hyphomicrobium denitrificans ATCC 51888]
          Length = 123

 Score =  131 bits (330), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 60/114 (52%), Positives = 80/114 (70%), Gaps = 4/114 (3%)

Query: 14  SLALSPSHGQDAGA----SGEQAFNNSCRTCHTVKDGDNRVGPNLHNVVGRKAGSVANFP 69
           +L LS    Q A A    SGEQ FNN+CRTCH+ K+GDNR+GPNLH +VGRK+G+V  + 
Sbjct: 9   ALVLSAVFSQAAFAADQTSGEQLFNNNCRTCHSWKEGDNRLGPNLHKIVGRKSGAVEGYA 68

Query: 70  YSEAMKSSDIVWDESALLRFIEDPEAVVSGNGMKPYTGVRSAEDRARIVAFLKS 123
           YS++MK +++ WDE+ L +FI  P++VV  N MKP+ G+  A  R  IV FLKS
Sbjct: 69  YSQSMKQANLTWDEATLDKFIASPDSVVQSNNMKPFNGITDAATRKHIVEFLKS 122


>ref|NP_773277.1| cytochrome C [Bradyrhizobium japonicum USDA 110]
 dbj|BAC51902.1| blr6637 [Bradyrhizobium japonicum USDA 110]
          Length = 141

 Score =  129 bits (325), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 61/122 (50%), Positives = 88/122 (72%), Gaps = 5/122 (4%)

Query: 4   GFIVVVCGLMSLALSPSHGQDAGASGEQAFNNSCRTCHTVKDGDNRVGPNLHNVVGRKAG 63
              +++    SLA  P++ + A    +QAFNNSCRTCH+VK+GDNR+GPNL  +VGRKAG
Sbjct: 23  ALTLLLSAPSSLAQQPANDEVA----QQAFNNSCRTCHSVKEGDNRLGPNLSKIVGRKAG 78

Query: 64  SVANFPYSEAMKSSDIVWDESALLRFIEDPEAVVSGNGMKPYTGVRSAEDRARIVAFLKS 123
           S+ ++ YS +MK +  VWD+  L RF+  P+ VVSGN M+PY GV SAE+ A+++A+L++
Sbjct: 79  SLPDYNYSPSMKEAGFVWDQDKLTRFMVKPDEVVSGNKMQPYGGV-SAEEAAKVLAYLQA 137

Query: 124 PG 125
            G
Sbjct: 138 AG 139


>gb|AAD17888.1| cytochrome C2 [Bradyrhizobium japonicum]
          Length = 137

 Score =  127 bits (320), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 66/129 (51%), Positives = 91/129 (70%), Gaps = 8/129 (6%)

Query: 1   MRPGFIVVVCGLMSLALS-PSHGQDAGASGE---QAFNNSCRTCHTVKDGDNRVGPNLHN 56
           +RP   +   G ++L LS PS      A+ E   QAFNNSCRTCH+VK+GDNR+GPNL  
Sbjct: 13  LRP---IARAGALTLFLSAPSSRAQQPANDEAAQQAFNNSCRTCHSVKEGDNRLGPNLSK 69

Query: 57  VVGRKAGSVANFPYSEAMKSSDIVWDESALLRFIEDPEAVVSGNGMKPYTGVRSAEDRAR 116
           +VGRKAGS+ ++ YS +MK +  VWD+  L RF+  P+ VVSGN M+PY GV SA++ A+
Sbjct: 70  IVGRKAGSLPDYNYSPSMKEAGFVWDQDKLTRFMVKPDEVVSGNKMQPYGGV-SADEAAK 128

Query: 117 IVAFLKSPG 125
           +VA+L++ G
Sbjct: 129 VVAYLQAAG 137


>ref|YP_004675158.1| Cytochrome c class I [Hyphomicrobium sp. MC1]
 emb|CCB64584.1| Cytochrome c class I [Hyphomicrobium sp. MC1]
          Length = 124

 Score =  116 bits (291), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 62/113 (54%), Positives = 81/113 (71%), Gaps = 3/113 (2%)

Query: 14  SLALSPSHGQDAGAS---GEQAFNNSCRTCHTVKDGDNRVGPNLHNVVGRKAGSVANFPY 70
           ++ALSP   + A A+   G +AFNN+CRTCH+ K+GDNR+GP LH ++GRKAG+   F Y
Sbjct: 9   AIALSPMLIETAFAAEEVGPEAFNNNCRTCHSWKEGDNRLGPTLHGIIGRKAGTAEGFNY 68

Query: 71  SEAMKSSDIVWDESALLRFIEDPEAVVSGNGMKPYTGVRSAEDRARIVAFLKS 123
           S AMKSS I WDE+ L +FI +P AVV  N MKP++GV  A  R +I+ FLKS
Sbjct: 69  SSAMKSSGITWDEATLDKFITNPNAVVPNNNMKPFSGVGDAATRKQIIDFLKS 121


>gb|AAT76672.1| cytochrome c precursor [Azospirillum brasilense]
          Length = 123

 Score =  104 bits (259), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 54/123 (43%), Positives = 79/123 (64%), Gaps = 4/123 (3%)

Query: 1   MRPGFIVVVCGLMSLALSPSHGQDAGASGEQAFNNSCRTCHTVK-DGDNRVGPNLHNVVG 59
           M+    V+  GL +     +  QDA A GE+ FN  C+ CHT++  G NRVGPNLH VVG
Sbjct: 1   MKRSVAVLAFGLFAALPGIASAQDADA-GEKVFNQ-CKACHTIEAGGPNRVGPNLHGVVG 58

Query: 60  RKAGSVANFPYSEAMKSSDIVWDESALLRFIEDPEAVVSGNGMKPYTGVRSAEDRARIVA 119
           R +GS+ +F YS+AMK + + WDE+ L +++ DP+  V GN M  + GV++ + R  ++A
Sbjct: 59  RPSGSIESFKYSDAMKGAGLTWDEANLDKYLTDPKGTVPGNKM-AFAGVKNEQARKDLIA 117

Query: 120 FLK 122
           FLK
Sbjct: 118 FLK 120