BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0043.0057.p         (154 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_766880.1| transcriptional regulator [Bradyrhizobium japon...   266   5e-70
ref|YP_002547619.1| transcriptional regulator AsnC family [Agrob...   262   1e-68
ref|YP_002541605.1| leucine-responsive transcriptional regulator...   259   9e-68
ref|YP_001523182.1| transcriptional regulatory protein [Azorhizo...   253   6e-66
gb|ABO31419.1| leucine-responsive regulatory protein like-protei...   246   6e-64

>ref|NP_766880.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 dbj|BAC45505.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 154

 Score =  266 bits (681), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 126/154 (81%), Positives = 140/154 (90%)

Query: 1   MAARLDRIDLKMLRLLQKNGRLSNAELAEQVGVSPATCHRRTQALFDEGYLSGVRAMVAP 60
           M  RLDR DLK+LRLLQ NGRLSNAELAE V +SPATCHRRTQ LF++G+++ VRAM+AP
Sbjct: 1   MPLRLDRTDLKILRLLQNNGRLSNAELAETVAISPATCHRRTQRLFEDGFIAAVRAMIAP 60

Query: 61  RKLGKGTLVMVGVVLDRSTPESFASFEQAVAKLKCVLDCHLVAGDFDYFLKIRAGDVDDF 120
           +K+ KGTLVMVGVVLDRSTPESFA FEQA+AKLK VLDCHLVAGDFDYFLKIR GD++DF
Sbjct: 61  KKVAKGTLVMVGVVLDRSTPESFAIFEQAIAKLKFVLDCHLVAGDFDYFLKIRVGDMEDF 120

Query: 121 KRIHGDQLIALPGVRQTRTFFVMKEVVDNAALEF 154
            RIHG+QLIALPGVRQTRTFFVMKEVVDNA LEF
Sbjct: 121 NRIHGEQLIALPGVRQTRTFFVMKEVVDNAPLEF 154


>ref|YP_002547619.1| transcriptional regulator AsnC family [Agrobacterium vitis S4]
 gb|ACM38903.1| transcriptional regulator AsnC family [Agrobacterium vitis S4]
          Length = 154

 Score =  262 bits (670), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 125/154 (81%), Positives = 137/154 (88%)

Query: 1   MAARLDRIDLKMLRLLQKNGRLSNAELAEQVGVSPATCHRRTQALFDEGYLSGVRAMVAP 60
           M+  LDRIDLKM+RLLQKNGRL+NAELAEQV +SPATCHRRTQ LF +GY++GVRAMVAP
Sbjct: 1   MSESLDRIDLKMIRLLQKNGRLTNAELAEQVSISPATCHRRTQKLFAQGYITGVRAMVAP 60

Query: 61  RKLGKGTLVMVGVVLDRSTPESFASFEQAVAKLKCVLDCHLVAGDFDYFLKIRAGDVDDF 120
            K+ +  LVMVGVVLDRSTP+SFA+FE AVAKL  VLDCHLVAGDFDYFLKIR GD+ DF
Sbjct: 61  AKVNRAALVMVGVVLDRSTPDSFAAFEAAVAKLNFVLDCHLVAGDFDYFLKIRVGDMADF 120

Query: 121 KRIHGDQLIALPGVRQTRTFFVMKEVVDNAALEF 154
            RIHG QLIALPGVRQTRTFFVMKEVVDN ALEF
Sbjct: 121 NRIHGSQLIALPGVRQTRTFFVMKEVVDNRALEF 154


>ref|YP_002541605.1| leucine-responsive transcriptional regulator protein [Agrobacterium
           radiobacter K84]
 gb|ACM30008.1| leucine-responsive transcriptional regulator protein [Agrobacterium
           radiobacter K84]
          Length = 154

 Score =  259 bits (662), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 125/154 (81%), Positives = 138/154 (89%)

Query: 1   MAARLDRIDLKMLRLLQKNGRLSNAELAEQVGVSPATCHRRTQALFDEGYLSGVRAMVAP 60
           M + LDRIDLK+LRLLQKNGRLSNAELA+ V VSPATCHRRTQ LF+EGY+  VRAM+ P
Sbjct: 1   MTSELDRIDLKILRLLQKNGRLSNAELAQLVDVSPATCHRRTQRLFEEGYIKTVRAMIEP 60

Query: 61  RKLGKGTLVMVGVVLDRSTPESFASFEQAVAKLKCVLDCHLVAGDFDYFLKIRAGDVDDF 120
           +K+G+G LVMVGVVLDRSTPESF +FE+AVAKL  VLDC+LVAGDFDYFLKIRAGD+ DF
Sbjct: 61  QKVGRGALVMVGVVLDRSTPESFGAFEKAVAKLSFVLDCNLVAGDFDYFLKIRAGDMADF 120

Query: 121 KRIHGDQLIALPGVRQTRTFFVMKEVVDNAALEF 154
            RIHG QLIALPGVRQTRTFFVMKEVVDNA LEF
Sbjct: 121 NRIHGTQLIALPGVRQTRTFFVMKEVVDNALLEF 154


>ref|YP_001523182.1| transcriptional regulatory protein [Azorhizobium caulinodans ORS
           571]
 dbj|BAF86264.1| transcriptional regulatory protein [Azorhizobium caulinodans ORS
           571]
          Length = 154

 Score =  253 bits (647), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 124/154 (80%), Positives = 133/154 (86%)

Query: 1   MAARLDRIDLKMLRLLQKNGRLSNAELAEQVGVSPATCHRRTQALFDEGYLSGVRAMVAP 60
           M   LDRIDLK+LRLLQ NGR+SNA+LAE V VSPATCHRRTQ LF++GYLSGVRA V P
Sbjct: 1   MDETLDRIDLKILRLLQANGRMSNADLAEAVAVSPATCHRRTQRLFEQGYLSGVRAQVNP 60

Query: 61  RKLGKGTLVMVGVVLDRSTPESFASFEQAVAKLKCVLDCHLVAGDFDYFLKIRAGDVDDF 120
            K+ +GTLVMVGVVLDRSTPESF  FE+AVAKLK VLDCHLVAGDFDYFLKIR GD+ DF
Sbjct: 61  HKVERGTLVMVGVVLDRSTPESFGEFERAVAKLKFVLDCHLVAGDFDYFLKIRVGDMADF 120

Query: 121 KRIHGDQLIALPGVRQTRTFFVMKEVVDNAALEF 154
            RIH  QLIALP VRQTRTFFVMKEVVDNA LEF
Sbjct: 121 NRIHAQQLIALPSVRQTRTFFVMKEVVDNAPLEF 154


>gb|ABO31419.1| leucine-responsive regulatory protein like-protein [Phyllobacterium
           brassicacearum]
          Length = 159

 Score =  246 bits (629), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 120/154 (77%), Positives = 132/154 (85%)

Query: 1   MAARLDRIDLKMLRLLQKNGRLSNAELAEQVGVSPATCHRRTQALFDEGYLSGVRAMVAP 60
           M+A LDRIDLKMLRLLQKNGRL+NAELA    VSPATCHRRTQ LFD+GY+  VRAMV P
Sbjct: 6   MSAGLDRIDLKMLRLLQKNGRLTNAELASLADVSPATCHRRTQRLFDDGYIKTVRAMVQP 65

Query: 61  RKLGKGTLVMVGVVLDRSTPESFASFEQAVAKLKCVLDCHLVAGDFDYFLKIRAGDVDDF 120
           + + +  LVMVGVVLDRSTPESFA FEQAV+KL  +LDC+LVAGDFDYFLKIR  D+ DF
Sbjct: 66  QMVDRAALVMVGVVLDRSTPESFAQFEQAVSKLSFILDCNLVAGDFDYFLKIRVRDMADF 125

Query: 121 KRIHGDQLIALPGVRQTRTFFVMKEVVDNAALEF 154
            RIHG QLIALPGVRQTRTFFVMKEVVDNA L+F
Sbjct: 126 NRIHGSQLIALPGVRQTRTFFVMKEVVDNAPLDF 159