BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0043.0042.p (406 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002424316.1| hypothetical protein Mchl_5666 [Methylobacte... 503 e-140 ref|YP_003941264.1| hypothetical protein Entcl_1723 [Enterobacte... 452 e-125 ref|YP_003295268.1| hypothetical protein ETAE_1214 [Edwardsiella... 439 e-121 ref|NP_766812.1| hypothetical protein blr0172 [Bradyrhizobium ja... 425 e-117 ref|YP_004614001.1| hypothetical protein Mesop_5493 [Mesorhizobi... 414 e-113 >ref|YP_002424316.1| hypothetical protein Mchl_5666 [Methylobacterium chloromethanicum CM4] gb|ACK86388.1| conserved hypothetical protein [Methylobacterium chloromethanicum CM4] Length = 406 Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust. Identities = 240/404 (59%), Positives = 293/404 (72%), Gaps = 5/404 (1%) Query: 1 MPKDIVICCDGTGNEIGDNISNVLKLFRVADKNDRQRIYYHPGLGTIGLQNAWGRFKQQM 60 MPK+IVICCDGTGNEIG+ ISNVLKL+R+ +K+D QR+YY G+GTIG +NAW R KQ+ Sbjct: 1 MPKNIVICCDGTGNEIGETISNVLKLYRILEKDDTQRVYYSSGIGTIGYRNAWQRLKQET 60 Query: 61 RGLFGLAFGAGLDQDTLGAYLFLCRTWEPGDRVWMFGFSRGAYTVRVLAAFVHAMGLLPV 120 RG+FGLA G GLD+D L AY FLC +E GDRVW+FGFSRGAYTVR LA F++ +GLL Sbjct: 61 RGVFGLATGYGLDEDVLAAYRFLCDAYEDGDRVWLFGFSRGAYTVRALAGFINVIGLLRP 120 Query: 121 DQLDLASYAFGTYKKASSDAQKSD-----GTFDYAPLKEAWHFSQIAGGRNIDIEFVGVW 175 DQ++LA YAF YK+ S + + D +K AW F++IAG I IEF+GVW Sbjct: 121 DQVNLAGYAFAAYKQVSVSNRAPEWPGEPAKVDNPAMKAAWQFARIAGAYPIRIEFIGVW 180 Query: 176 DTVASIIVPRQDNFLFDLQTLLFTRTNSSVKRFRQAIAIDERRRMFRLNRWIEPQKFRSD 235 DTVASII PR+D LQTL +TR N VK FRQAIAIDE RRMFRLNRW + Q FR D Sbjct: 181 DTVASIIAPRKDRLFPTLQTLPYTRVNPCVKAFRQAIAIDECRRMFRLNRWGDRQPFRKD 240 Query: 236 PFDPATEVEQDIRQVWFAGVHSDVGGGYPEDQSGPSKFPLIWMLEQAKAAGLQMDQALID 295 P++ A+ EQD+RQVWFAGVH+D+GGGYPE QSG SKFPL+WM+ A+A GL+ D+ LID Sbjct: 241 PYERASVAEQDVRQVWFAGVHADIGGGYPEAQSGISKFPLLWMVRHAQAKGLRCDRRLID 300 Query: 296 HLAWGMPLPPHKHDYVPPSATGPLHNSLTAAWEILEWIPKSDKWKEWPERKSFLGFYLPR 355 HL G+ DYVPP G H+S+ A W ILEW+PK +W+EWP RK GFYLPR Sbjct: 301 HLVLGISSDDASTDYVPPDVRGKTHDSMNAGWRILEWLPKKARWREWPARKVVAGFYLPR 360 Query: 356 GEPRPIADGATIHASVLERMEKDPAYKPINMPKTYNVEPMTPPP 399 EPR I DGA IH SV ++ME+DP YKP+N+P ++ E PP Sbjct: 361 AEPRRIPDGARIHWSVFQKMEQDPGYKPLNLPDSHLREEDLAPP 404 >ref|YP_003941264.1| hypothetical protein Entcl_1723 [Enterobacter cloacae SCF1] gb|ADO47980.1| Protein of unknown function DUF2235 [Enterobacter cloacae SCF1] Length = 393 Score = 452 bits (1163), Expect = e-125, Method: Compositional matrix adjust. Identities = 219/387 (56%), Positives = 274/387 (70%), Gaps = 3/387 (0%) Query: 1 MPKDIVICCDGTGNEIGDNISNVLKLFRVADKNDRQRIYYHPGLGTIGLQNAWGRFKQQM 60 M K IVICCDGTGNE+ +SNVLK +R+ +K QR+ Y PG+GT+ NAW R +Q++ Sbjct: 1 MSKRIVICCDGTGNELNTTMSNVLKFYRILEKTPEQRVLYTPGIGTLNQDNAWQRLRQKV 60 Query: 61 RGLFGLAFGAGLDQDTLGAYLFLCRTWEPGDRVWMFGFSRGAYTVRVLAAFVHAMGLLPV 120 R +FG+A G GLD D L AY FLC+ WE GDR+++ GFSRGAYTVRV+AA V +G+LP Sbjct: 61 RSVFGVATGYGLDDDVLEAYDFLCQHWERGDRIYLLGFSRGAYTVRVVAALVETIGILPP 120 Query: 121 DQLDLASYAFGTYKKASSDAQKSDGTFDYAPLKEAWHFSQIAGGRNIDIEFVGVWDTVAS 180 DQ +LA Y YKKAS D + + A L+ AW F +AGGR IEF+GVWDTVAS Sbjct: 121 DQRNLAGYGLTAYKKASGDKPEPLAS---AELQTAWLFGNVAGGRPARIEFIGVWDTVAS 177 Query: 181 IIVPRQDNFLFDLQTLLFTRTNSSVKRFRQAIAIDERRRMFRLNRWIEPQKFRSDPFDPA 240 IIVPR D + LQTL FTRTN++VK FRQAI+IDERRRMFRLNRW PQ +R DP+D + Sbjct: 178 IIVPRGDRLIPSLQTLRFTRTNAAVKTFRQAISIDERRRMFRLNRWTSPQSYRPDPYDKS 237 Query: 241 TEVEQDIRQVWFAGVHSDVGGGYPEDQSGPSKFPLIWMLEQAKAAGLQMDQALIDHLAWG 300 +E QDI QVWFAGVH+DVGGGYPE SG +K+PL WML++A+AAGL +L +A G Sbjct: 238 SETPQDILQVWFAGVHADVGGGYPESASGLAKYPLGWMLDEAQAAGLTFHDSLRRSIADG 297 Query: 301 MPLPPHKHDYVPPSATGPLHNSLTAAWEILEWIPKSDKWKEWPERKSFLGFYLPRGEPRP 360 P K +V P+ LH SLT W ILEW+PK +W+EWP R++ G+YLP GEPR Sbjct: 298 GTSPHGKETFVAPNPGAELHRSLTGGWWILEWLPKRVRWREWPARRALWGWYLPMGEPRR 357 Query: 361 IADGATIHASVLERMEKDPAYKPINMP 387 + D A IH SV ERM + Y+P+N+P Sbjct: 358 LPDDALIHFSVRERMAQVTDYRPVNLP 384 >ref|YP_003295268.1| hypothetical protein ETAE_1214 [Edwardsiella tarda EIB202] gb|ACY84057.1| hypothetical protein ETAE_1214 [Edwardsiella tarda EIB202] gb|ADM41243.1| hypothetical protein ETAF_1128 [Edwardsiella tarda FL6-60] Length = 398 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 224/394 (56%), Positives = 280/394 (71%), Gaps = 10/394 (2%) Query: 1 MPKDIVICCDGTGNEIGDNISNVLKLFRVADKNDRQRIYYHPGLGTIGLQNAWGRFKQQM 60 M K IVICCDGTGNE+ +SNVLK +R+ +KN +Q++ Y PG+GT+GL N W RFKQQ Sbjct: 1 MDKRIVICCDGTGNELNRTMSNVLKFYRILEKNTQQQVLYTPGVGTLGLDNPWQRFKQQC 60 Query: 61 RGLFGLAFGAGLDQDTLGAYLFLCRTWEPGDRVWMFGFSRGAYTVRVLAAFVHAMGLLPV 120 R L GL G GLD D L AY FLC+ W GD++++ GFSRGAYTVRVLAA + +G++ Sbjct: 61 RLLLGLGTGYGLDNDVLKAYDFLCQNWHEGDKIYLLGFSRGAYTVRVLAALIETIGIIAP 120 Query: 121 DQLDLASYAFGTYKKASSDAQKS---DGTFDYAPLKEAWHFSQIAGGRNIDIEFVGVWDT 177 +Q +LA Y YKKAS D + DG L++AW F +IAGGR IEF+GVWDT Sbjct: 121 EQSNLAEYGLTAYKKASGDGVATAPDDG------LEDAWLFGRIAGGRPARIEFIGVWDT 174 Query: 178 VASIIVPRQDNFLFDLQTLLFTRTNSSVKRFRQAIAIDERRRMFRLNRWIEPQKFRSDPF 237 V+S+IVP +D L +QTL FTRTN +VK FRQAI+IDERRRMFRLNRWI+PQ +R P+ Sbjct: 175 VSSVIVPHRDCLLPKIQTLRFTRTNKAVKCFRQAISIDERRRMFRLNRWIDPQPYRPIPY 234 Query: 238 DPATEVEQDIRQVWFAGVHSDVGGGYPEDQSGPSKFPLIWMLEQAKAAGLQMDQALIDHL 297 +E+ QDI+QVWFAGVH+DVGGGYPE +SG SK+PLIWMLE+A+ AGL D+ + Sbjct: 235 RKESEIAQDIQQVWFAGVHADVGGGYPESESGLSKYPLIWMLEEAQKAGLTYDEETRRTI 294 Query: 298 AWGMPLPPHKHDYVPPSATGPLHNSLTAAWEILEWIPKSDKWKEW-PERKSFLGFYLPRG 356 + G + +VPP ATG LH SL W ILE+IPK+ +W+EW R +FLG YLP G Sbjct: 295 SMGGKMRLGGEIFVPPDATGILHRSLKGLWWILEFIPKNKRWREWRTSRPAFLGRYLPLG 354 Query: 357 EPRPIADGATIHASVLERMEKDPAYKPINMPKTY 390 EPR I G+ IHASV ERM KDP Y+PIN+ Y Sbjct: 355 EPRAIPAGSLIHASVRERMAKDPLYRPINLHDAY 388 >ref|NP_766812.1| hypothetical protein blr0172 [Bradyrhizobium japonicum USDA 110] dbj|BAC45437.1| blr0172 [Bradyrhizobium japonicum USDA 110] Length = 502 Score = 425 bits (1093), Expect = e-117, Method: Compositional matrix adjust. Identities = 220/419 (52%), Positives = 279/419 (66%), Gaps = 21/419 (5%) Query: 2 PKDIVICCDGTGNEIGDNISNVLKLFRVADKND----RQRIYYHPGLGTIGLQNAWGRFK 57 PK +VICCDGTGNEI +NISNVLKL+R K D RQ ++Y PG+GT+ W R K Sbjct: 70 PKHLVICCDGTGNEISENISNVLKLYRCLRKTDKTQPRQMVFYDPGVGTVTEPTTWHRLK 129 Query: 58 QQMRGLFGLAFGAGLDQDTLGAYLFLCRTWEPGDRVWMFGFSRGAYTVRVLAAFVHAMGL 117 + + GLA G GLD + L AY FL + PGD++++FGFSRGAYTVRVLA +H +GL Sbjct: 130 ANVNLVLGLATGYGLDDNVLSAYCFLVEHYAPGDKIYLFGFSRGAYTVRVLAGLIHKVGL 189 Query: 118 LPVDQLDLASYAFGTYKKASSDAQKSD-------GTFDYAPLKE-----AWHFSQIAGGR 165 + +Q +LA YK+ S + +D G+ D PL + A F++I R Sbjct: 190 ISPEQANLAGSGLVAYKQYSGSGRGNDIADLKDVGSDDDGPLPQDKFDLAAQFARITSSR 249 Query: 166 NIDIEFVGVWDTVASIIVPRQDNFLF-DLQTLLFTRTNSSVKRFRQAIAIDERRRMFRLN 224 I F+GVWDTVAS+IVPR D + + L FT N SVK FRQAIAIDERR MFRL Sbjct: 250 WPTIHFIGVWDTVASVIVPRPDRLYWPSFEELAFTLRNPSVKIFRQAIAIDERRCMFRLK 309 Query: 225 RWIEPQKFRSDPFDPATEVE-QDIRQVWFAGVHSDVGGGYPEDQSGPSKFPLIWMLEQAK 283 +W EPQ++ S+ F P + E QDI QVWFAGVHSDVGGGYPE QSG SK+PLIWM+++A Sbjct: 310 QWREPQEYWSNRFVPDDKKEPQDIMQVWFAGVHSDVGGGYPEAQSGESKYPLIWMIDEAG 369 Query: 284 AAGLQMDQALIDHLAWGMPLPPHKHDYVPPS---ATGPLHNSLTAAWEILEWIPKSDKWK 340 AGL + ++ LAWG+ YVPP+ TG LHNS+TAAW +LE++PKS K+K Sbjct: 370 KAGLNFNPRTVNQLAWGVHRKNSPFQYVPPAYTGKTGELHNSMTAAWRLLEYLPKSAKYK 429 Query: 341 EWPERKSFLGFYLPRGEPRPIADGATIHASVLERMEKDPAYKPINMPKTYNVEPMTPPP 399 EWPERK FLGFY+P EPR I +GA +H SV++RM +P Y+P+N+PKTY PM PP Sbjct: 430 EWPERKVFLGFYIPDCEPRLIPEGAHVHESVVKRMAVEPDYRPVNLPKTYETVPMPVPP 488 >ref|YP_004614001.1| hypothetical protein Mesop_5493 [Mesorhizobium opportunistum WSM2075] gb|AEH89907.1| Protein of unknown function DUF2235 [Mesorhizobium opportunistum WSM2075] Length = 391 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 215/406 (52%), Positives = 272/406 (66%), Gaps = 17/406 (4%) Query: 1 MPKDIVICCDGTGNEIGDNISNVLKLFRVADKNDRQRIYYHPGLGTIGLQNAWGRFKQQM 60 M K+IVICCDGTGNE+ ++SNVLKLFR+A KN+ Q +YY+PG+GTIGL + W Q Sbjct: 1 MKKNIVICCDGTGNEVEGDLSNVLKLFRIAQKNEEQIVYYNPGVGTIGLSSEWNNVLQNA 60 Query: 61 RGLFGLAFGAGLDQDTLGAYLFLCRTWEPGDRVWMFGFSRGAYTVRVLAAFVHAMGLLPV 120 +G+FGLA G GLD + + AY F+C+ +E GD++++FGFSRG+YTVR LA +H GLL Sbjct: 61 KGIFGLATGYGLDDNIMDAYRFVCQRYEDGDKLFLFGFSRGSYTVRALAGLIHMAGLLRP 120 Query: 121 DQLDLASYAFGTYKKASSDAQKSDGTFDYAPLKEAWHFSQIAGGRNIDIEFVGVWDTVAS 180 +QL++A+YA YK+AS L AW F +I G R I F+GVWDTVAS Sbjct: 121 EQLNVATYALTAYKRASEQNN----------LHLAWDFGRIMGTRRATIHFLGVWDTVAS 170 Query: 181 IIVPRQDNFLF-DLQTLLFTRTNSSVKRFRQAIAIDERRRMFRLNRWIEPQKFRSDPF-D 238 +IVPR+D F L+TL FTR N SV+ FRQA+AIDERRRMFRLNRW Q + PF + Sbjct: 171 MIVPRRDRFYLPSLRTLPFTRKNPSVRCFRQAVAIDERRRMFRLNRWEPGQNYVPVPFAN 230 Query: 239 PATEVEQDIRQVWFAGVHSDVGGGYPEDQSGPSKFPLIWMLEQAKAAGLQMDQALIDHLA 298 P ++V QD Q+ FAGVHSD+GGGYPE +SG SKFPL W+ +A A GLQ+D A+ DHL Sbjct: 231 PPSDVPQDTMQMAFAGVHSDIGGGYPESESGLSKFPLAWLTSEAAAQGLQIDVAMYDHLV 290 Query: 299 WGMPLPPHKHDYVPPSATGPLHNSLTAAWEILEWIPKSDKWKEWPERKSFLGFYLPRGEP 358 G L KH YV P AT LHNSLT W ILE +PKS KW+EW +R+S YLP EP Sbjct: 291 DGKVLAGGKHAYVAPDATAELHNSLTWGWWILELLPKSVKWREW-KRRSLFCLYLPWAEP 349 Query: 359 RPIADGATIHASVLERMEKDPAYKPINMPKTYNVEPMTPPPAPPAP 404 R + D IH SV +R + +Y+P+N+ N PP P AP Sbjct: 350 RRLPDDLHIHPSVEDRHNRLASYRPVNVCFPGN----GAPPRPAAP 391