BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0043.0040.p         (175 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AEA81999.1| putative periplasmic component of ABC-type transp...    37   1.3  
ref|ZP_04154138.1| MORN repeat variant [Bacillus pseudomycoides ...    35   5.8  
ref|ZP_08072037.1| hypothetical protein Met49242DRAFT_1424 [Meth...    35   6.3  
ref|XP_003292568.1| PHG1A protein [Dictyostelium purpureum] >gi|...    34   7.2  
ref|YP_003748827.1| nitrite/nitrate transporter transmembrane pr...    34   8.3  

>gb|AEA81999.1| putative periplasmic component of ABC-type transport system
           [Pseudomonas stutzeri DSM 4166]
          Length = 330

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 9/120 (7%)

Query: 9   AILSGLVVAAFGLFWWVGSYSD---------RVFASRFRTRFPEKTLSYTGDQLGELVQS 59
           A L  L V+ +GL W V              +  A  FR   P+       ++ G +V++
Sbjct: 92  AKLRMLNVSTWGLLWLVSREQGMSTLDDLRGKEIAMPFRGDMPDILFGLLAERAGIVVRN 151

Query: 60  DLRMKYVFPILFPLDLIVMLALAGAMGAASSHWLSRIYPSAAWLGLVVPAVYLLSDLIED 119
           DLR++YV   +  + L++M     A+ A  +  ++    S   LGLV P +Y   DL ++
Sbjct: 152 DLRLRYVATPIDAMQLLLMRRTDHALLAEPAISMALRKASEGPLGLVAPDLYRSVDLQQE 211


>ref|ZP_04154138.1| MORN repeat variant [Bacillus pseudomycoides DSM 12442]
 gb|EEM14150.1| MORN repeat variant [Bacillus pseudomycoides DSM 12442]
          Length = 548

 Score = 34.7 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 103 LGLVVPAVYLLSDLIEDCLLAWLLLHGDPHAAARSVSILKAITTIKLVGIFASIALTLAA 162
           LG  + A Y++   I + L     L G+P+  A +V+ L  + TI LV I+A +A TL +
Sbjct: 23  LGFSLFASYMIFGNIFEALFKMWELRGEPNKTASAVTSLSYVFTI-LVAIYALLATTLFS 81

Query: 163 FVGW 166
            + W
Sbjct: 82  LLVW 85


>ref|ZP_08072037.1| hypothetical protein Met49242DRAFT_1424 [Methylocystis sp. ATCC
           49242]
 gb|EFY00240.1| hypothetical protein Met49242DRAFT_1424 [Methylocystis sp. ATCC
           49242]
          Length = 165

 Score = 34.7 bits (78), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 69/140 (49%), Gaps = 16/140 (11%)

Query: 40  RFPEKTLSYTGDQLGELVQSDLR--MKYVFPIL------FPLDLIVMLALAGAMGAASSH 91
           RF E+  +++ + L   + ++      Y FPIL      F L L   L+L   + A ++ 
Sbjct: 32  RFLERGNAFSAETLASWISANPEAARAYAFPILLGFDLLFLLCLGCFLSLGSLLAAGAAQ 91

Query: 92  WLSRIYPSAAWLGLVV-PAVYLLSDLIEDCLLAWLLLHGDPHAAARSVSILKAITTIKLV 150
           W     P A    +V+ P V++++D  ED  LA  LL  +   AA +V+ ++ +T +K+ 
Sbjct: 92  W-----PGALQCAVVILPIVFMMADATEDLTLARFLLTPEKIDAA-AVAFVQKVTQVKIY 145

Query: 151 GIFASIALTLA-AFVGWLFH 169
              A++A T A +F   LF 
Sbjct: 146 ACGAAMAQTAALSFYAALFK 165


>ref|XP_003292568.1| PHG1A protein [Dictyostelium purpureum]
 gb|EGC30895.1| PHG1A protein [Dictyostelium purpureum]
          Length = 639

 Score = 34.3 bits (77), Expect = 7.2,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 20/111 (18%)

Query: 6   LVTAILSGLVVAAFGLFWWV----GSYSDRVFASRFRTRFPEKTLSYTGDQLGELVQSDL 61
           L  A + GL  A   LF ++    G +S RVF S F+ R  +K   YT            
Sbjct: 368 LSPANIGGLAEALIVLFIFMAVCAGYFSTRVF-SIFKGRNWKKNTIYTA----------- 415

Query: 62  RMKYVFP-ILFPLDLIVMLALAGAMGAASSHWLSRIYPSAAWLGLVVPAVY 111
              + FP I+F +  IV + L GA  +A+  +++ +   A W G+ VP V+
Sbjct: 416 ---FTFPGIVFGIFFIVNMFLRGAKSSAAVPFVTFVKIIALWFGISVPLVF 463


>ref|YP_003748827.1| nitrite/nitrate transporter transmembrane protein [Ralstonia
           solanacearum CFBP2957]
 emb|CBJ54459.1| Putative nitrite/nitrate transporter transmembrane protein
           [Ralstonia solanacearum CFBP2957]
          Length = 434

 Score = 33.9 bits (76), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 2/68 (2%)

Query: 82  AGAMGAASSHWLSRIYPSAAWLGLVVPAVYLLSDLIEDCLLAWLLLHGDP-HAAARSVSI 140
           AG  GAA + +++ +   AA    VVP VY +  L+   LL WL    DP HA+ RSV +
Sbjct: 152 AGNAGAALNKFVAPVLIVAAGTWTVVPRVYAIGMLV-TALLFWLFSSTDPSHASGRSVGL 210

Query: 141 LKAITTIK 148
            + +  +K
Sbjct: 211 REQLRVMK 218