BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0043.0039.p (458 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_772779.1| hypothetical protein blr6139 [Bradyrhizobium ja... 742 0.0 ref|YP_001204399.1| hypothetical protein BRADO2332 [Bradyrhizobi... 702 0.0 ref|YP_780142.1| VWA containing CoxE family protein [Rhodopseudo... 693 0.0 ref|YP_004107159.1| VWA containing CoxE family protein [Rhodopse... 691 0.0 ref|YP_001238738.1| hypothetical protein BBta_2692 [Bradyrhizobi... 691 0.0 >ref|NP_772779.1| hypothetical protein blr6139 [Bradyrhizobium japonicum USDA 110] dbj|BAC51404.1| blr6139 [Bradyrhizobium japonicum USDA 110] Length = 458 Score = 742 bits (1916), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/458 (83%), Positives = 411/458 (89%) Query: 1 MRENLHRFFRAARGAGVRVSPAESIDAMRAVAQVGFADRDILRDTFLLTLAKTQDEKRAL 60 MREN+HRFFRAARGAGV VSPAESIDAMRAVAQVGF+DR ILRDT LLTLAK+QDEK AL Sbjct: 1 MRENIHRFFRAARGAGVHVSPAESIDAMRAVAQVGFSDRTILRDTLLLTLAKSQDEKLAL 60 Query: 61 GECFDLFFSQPEPQQENAEQSKTDDGSESGANPSADEHGDASGGSANETIGPLAQMLLSQ 120 G+CFDLFFSQPEP+QE E + D E+ PS+ DA GGS E +GPLAQMLLSQ Sbjct: 61 GDCFDLFFSQPEPRQEQPEGTDEDASQETDQAPSSSASSDAGGGSPQEGLGPLAQMLLSQ 120 Query: 121 DRSAISSAIANASGAASLPDIRYFTQRGIFQTRILDAMGIQRLRDDIDDLTARNPALAER 180 DR+AI++AIA+ +GAASL DIRY TQRGIF +RILDAMG+QRLRD++D+LTA NPALAER Sbjct: 121 DRNAIAAAIASGAGAASLSDIRYSTQRGIFSSRILDAMGLQRLRDELDELTATNPALAER 180 Query: 181 LQEALNGLRGTVRDAVSQALLLYGREEAENLRNEILRNAPLARIEPRQVEQMRTLIRQIA 240 L+ AL+ LR VRD VSQ L LY REEAENLRNEILRNAPLARIE RQV +MR LIRQIA Sbjct: 181 LRAALDALREAVRDTVSQGLALYAREEAENLRNEILRNAPLARIERRQVAEMRALIRQIA 240 Query: 241 RRLRERYSKPRKRQRRGHLDVRRTLRRNAAWGGVPFLTAWKRKHRDRPKIVALCDVSGSV 300 RRLRERYSKPRKRQRRGHLDVRRTLRRNAAWGGVPFLTAWKRKHRDRPKIVALCDVSGSV Sbjct: 241 RRLRERYSKPRKRQRRGHLDVRRTLRRNAAWGGVPFLTAWKRKHRDRPKIVALCDVSGSV 300 Query: 301 ARVSDFFLLLIHSLHEVVDDVRSFAFSGHLIEVSDILESKSPEEAMKEIMSKVGFGSSDY 360 A+VSDFFLLLIHSLHEVVDDVRSFAFS HLIEVSDILESKSPEEAM EIMSKVGFGSSDY Sbjct: 301 AQVSDFFLLLIHSLHEVVDDVRSFAFSSHLIEVSDILESKSPEEAMAEIMSKVGFGSSDY 360 Query: 361 GNSFADFEDNWMSAITPQTTVIVLGDARSNNLDPRADILRRIGERSKRLVWLNPEGRMVW 420 G+S DFE ++MSA+TPQTTVIVLGDARSNNLDPRADILRRI ERSKRLVWLNPEGR+ W Sbjct: 361 GSSLVDFEKDFMSALTPQTTVIVLGDARSNNLDPRADILRRISERSKRLVWLNPEGRLAW 420 Query: 421 GFGDSEMPRYATFCSVVRQCATAQQLERAVSDIVATYQ 458 GFGDSEMPRYATFCSVVRQCATA QLERAVSDIVATYQ Sbjct: 421 GFGDSEMPRYATFCSVVRQCATAHQLERAVSDIVATYQ 458 >ref|YP_001204399.1| hypothetical protein BRADO2332 [Bradyrhizobium sp. ORS 278] emb|CAL76162.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278] Length = 457 Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/458 (76%), Positives = 392/458 (85%), Gaps = 1/458 (0%) Query: 1 MRENLHRFFRAARGAGVRVSPAESIDAMRAVAQVGFADRDILRDTFLLTLAKTQDEKRAL 60 M+ENLHRFFRAARGAGV VSPAESIDAMRAVA VG DR +LRDT LLTLAK++DEK+AL Sbjct: 1 MQENLHRFFRAARGAGVHVSPAESIDAMRAVASVGVVDRTVLRDTMLLTLAKSEDEKKAL 60 Query: 61 GECFDLFFSQPEPQQENAEQSKTDDGSESGANPSADEHGDASGGSANETIGPLAQMLLSQ 120 G CFDLFF+ +P Q A DG+ S A +A G SGG AN +GPLAQMLL+Q Sbjct: 61 GACFDLFFAHVDPAQAEANDDAAQDGASSEAQ-AAPPSGQPSGGEANAELGPLAQMLLAQ 119 Query: 121 DRSAISSAIANASGAASLPDIRYFTQRGIFQTRILDAMGIQRLRDDIDDLTARNPALAER 180 + + IS+AIANAS A L +IRYFTQRG+F +R+L+ MGIQRLRDD+D LT NPALAER Sbjct: 120 NTADISAAIANASSAVGLSEIRYFTQRGLFSSRMLETMGIQRLRDDLDALTETNPALAER 179 Query: 181 LQEALNGLRGTVRDAVSQALLLYGREEAENLRNEILRNAPLARIEPRQVEQMRTLIRQIA 240 LQ L+GLR TVRDAV+QAL LYGREE ENLR+EILRNA L+RIEPRQV +MR LIRQIA Sbjct: 180 LQAGLDGLRDTVRDAVAQALALYGREETENLRHEILRNAQLSRIEPRQVAEMRALIRQIA 239 Query: 241 RRLRERYSKPRKRQRRGHLDVRRTLRRNAAWGGVPFLTAWKRKHRDRPKIVALCDVSGSV 300 RRLRERYSKPRKRQRRGHLD+RRTLRRNAAWG VPFLTAWKRKHRDRPKIVALCDVSGSV Sbjct: 240 RRLRERYSKPRKRQRRGHLDIRRTLRRNAAWGSVPFLTAWKRKHRDRPKIVALCDVSGSV 299 Query: 301 ARVSDFFLLLIHSLHEVVDDVRSFAFSGHLIEVSDILESKSPEEAMKEIMSKVGFGSSDY 360 ARVSDFFLLLIHSLH+VV DVRSFAFSGHLIEVS+ILE KS EEAM EIM KVGFGSSDY Sbjct: 300 ARVSDFFLLLIHSLHDVVSDVRSFAFSGHLIEVSEILEQKSAEEAMAEIMHKVGFGSSDY 359 Query: 361 GNSFADFEDNWMSAITPQTTVIVLGDARSNNLDPRADILRRIGERSKRLVWLNPEGRMVW 420 G+S DFE +M+++TPQTTVIVLGDARSN LDPRADIL+ I ER+KR+VWLNPEGR+ W Sbjct: 360 GSSLVDFERQFMASVTPQTTVIVLGDARSNKLDPRADILKAISERAKRVVWLNPEGRVTW 419 Query: 421 GFGDSEMPRYATFCSVVRQCATAQQLERAVSDIVATYQ 458 G+GDSEMPRY TFC+VVR CATAQQLERAVSDIV+ YQ Sbjct: 420 GWGDSEMPRYQTFCNVVRPCATAQQLERAVSDIVSAYQ 457 >ref|YP_780142.1| VWA containing CoxE family protein [Rhodopseudomonas palustris BisA53] gb|ABJ05162.1| VWA containing CoxE family protein [Rhodopseudomonas palustris BisA53] Length = 454 Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/463 (75%), Positives = 402/463 (86%), Gaps = 14/463 (3%) Query: 1 MRENLHRFFRAARGAGVRVSPAESIDAMRAVAQVGFADRDILRDTFLLTLAKTQDEKRAL 60 MR+ LHRFFRAARGAGVRVSPAESIDAMRAVA VGFADR +LRDT LLTLAK+QDEK+AL Sbjct: 1 MRQQLHRFFRAARGAGVRVSPAESIDAMRAVADVGFADRSVLRDTLLLTLAKSQDEKQAL 60 Query: 61 GECFDLFFSQPEPQ----QENAEQSKTDDGSESGANPSADEHGDASGGSAN-ETIGPLAQ 115 G+CFDLFFS+ + + +E +Q T D S ANP+A SGG A+ + +G LAQ Sbjct: 61 GDCFDLFFSRADLKSSEAKEAGQQGPTADAS---ANPAA------SGGDASPQELGELAQ 111 Query: 116 MLLSQDRSAISSAIANASGAASLPDIRYFTQRGIFQTRILDAMGIQRLRDDIDDLTARNP 175 MLLS DRSA+++A+A A+ AA+L DIRYFTQRG+FQTR+L+ +GI RLRDD+D LT +P Sbjct: 112 MLLSHDRSAVAAAMAGAANAAALSDIRYFTQRGLFQTRMLEQLGIARLRDDLDRLTVTSP 171 Query: 176 ALAERLQEALNGLRGTVRDAVSQALLLYGREEAENLRNEILRNAPLARIEPRQVEQMRTL 235 A AERL AL+ LR VR+ VSQALLLYGREE+ENLR+EILRNAPLAR+E RQVEQM+ L Sbjct: 172 ADAERLAAALDALREDVREMVSQALLLYGREESENLRHEILRNAPLARLERRQVEQMKAL 231 Query: 236 IRQIARRLRERYSKPRKRQRRGHLDVRRTLRRNAAWGGVPFLTAWKRKHRDRPKIVALCD 295 IR IARRLRERYSKPRKRQRRGHLDVR+T+RRNAAWGG+PFLTAWKR+HRDRPKIVALCD Sbjct: 232 IRAIARRLRERYSKPRKRQRRGHLDVRKTMRRNAAWGGIPFLTAWKRRHRDRPKIVALCD 291 Query: 296 VSGSVARVSDFFLLLIHSLHEVVDDVRSFAFSGHLIEVSDILESKSPEEAMKEIMSKVGF 355 VSGSVA+VSDFFLLLIHSLHEVVDDVRSFAFSGHLIEVS+IL+ +SPE AM+EIMSKVG+ Sbjct: 292 VSGSVAQVSDFFLLLIHSLHEVVDDVRSFAFSGHLIEVSEILDKQSPEAAMQEIMSKVGY 351 Query: 356 GSSDYGNSFADFEDNWMSAITPQTTVIVLGDARSNNLDPRADILRRIGERSKRLVWLNPE 415 GSSDYG S ADFE W+SA+TP+TTVI+LGDAR+N LDPRADILR I ER+KR+VWLNPE Sbjct: 352 GSSDYGRSLADFEKQWLSAVTPKTTVIILGDARTNKLDPRADILRTISERAKRVVWLNPE 411 Query: 416 GRMVWGFGDSEMPRYATFCSVVRQCATAQQLERAVSDIVATYQ 458 GRM WG+GDSEMPRYA FC +VRQCATA+QLERAVSDIVA YQ Sbjct: 412 GRMGWGWGDSEMPRYAPFCHLVRQCATARQLERAVSDIVAAYQ 454 >ref|YP_004107159.1| VWA containing CoxE family protein [Rhodopseudomonas palustris DX-1] gb|ADU42426.1| VWA containing CoxE family protein [Rhodopseudomonas palustris DX-1] Length = 463 Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/463 (74%), Positives = 398/463 (85%), Gaps = 5/463 (1%) Query: 1 MRENLHRFFRAARGAGVRVSPAESIDAMRAVAQVGFADRDILRDTFLLTLAKTQDEKRAL 60 MRE LHRFFRAARGAGVRVSPAESIDAMRAV++VGFADR +LRDT L+TLAKTQDEK+AL Sbjct: 1 MREELHRFFRAARGAGVRVSPAESIDAMRAVSEVGFADRGLLRDTLLVTLAKTQDEKQAL 60 Query: 61 GECFDLFFSQPEPQQENAEQSKTDDGSESGANPSADEHGDASG-----GSANETIGPLAQ 115 +CFDLFFS+PEP+ D SESGA+PS A G GSA +G LAQ Sbjct: 61 AQCFDLFFSRPEPKTNADAAEGADQQSESGASPSQPSGSSAPGQGGGEGSAPPELGELAQ 120 Query: 116 MLLSQDRSAISSAIANASGAASLPDIRYFTQRGIFQTRILDAMGIQRLRDDIDDLTARNP 175 MLL+QDRSA+++A+A A+ ASL +IR+FTQRG+FQ+R+++A+GI +LRDD+D L A +P Sbjct: 121 MLLAQDRSAVAAALAGAANEASLSNIRFFTQRGLFQSRMMEALGIGQLRDDLDRLKADDP 180 Query: 176 ALAERLQEALNGLRGTVRDAVSQALLLYGREEAENLRNEILRNAPLARIEPRQVEQMRTL 235 A AERL AL+GLR +VR+ V+QALLLYGREEAENLR+E+LRNAP+ R+E RQVEQM+ L Sbjct: 181 AQAERLAAALDGLRDSVREMVAQALLLYGREEAENLRHEVLRNAPMMRLERRQVEQMKEL 240 Query: 236 IRQIARRLRERYSKPRKRQRRGHLDVRRTLRRNAAWGGVPFLTAWKRKHRDRPKIVALCD 295 IR IARRLRERYSKPRKRQRRGHLDVRRT+RRNAAWG +PFLTAWKR+HRDRP+IVALCD Sbjct: 241 IRAIARRLRERYSKPRKRQRRGHLDVRRTIRRNAAWGNIPFLTAWKRRHRDRPQIVALCD 300 Query: 296 VSGSVARVSDFFLLLIHSLHEVVDDVRSFAFSGHLIEVSDILESKSPEEAMKEIMSKVGF 355 VSGSVA+VSDFFLLLIHSLHEVVDDVRSFAFSGHLIEVSDIL+ + PE AM+EIMSKVGF Sbjct: 301 VSGSVAQVSDFFLLLIHSLHEVVDDVRSFAFSGHLIEVSDILDKQEPEAAMREIMSKVGF 360 Query: 356 GSSDYGNSFADFEDNWMSAITPQTTVIVLGDARSNNLDPRADILRRIGERSKRLVWLNPE 415 GSSDYG S ADFE W+ A+TP+TTVIVLGDARSNNLDPR DILR I ER+KR+VWLNPE Sbjct: 361 GSSDYGASLADFEKRWLRAVTPKTTVIVLGDARSNNLDPRTDILRTISERAKRVVWLNPE 420 Query: 416 GRMVWGFGDSEMPRYATFCSVVRQCATAQQLERAVSDIVATYQ 458 GRM WG+GDSEM RYA FC++VRQC+ A+QLERAVSDIVA YQ Sbjct: 421 GRMGWGWGDSEMFRYAPFCNLVRQCSNAKQLERAVSDIVAAYQ 463 >ref|YP_001238738.1| hypothetical protein BBta_2692 [Bradyrhizobium sp. BTAi1] gb|ABQ34832.1| hypothetical protein BBta_2692 [Bradyrhizobium sp. BTAi1] Length = 458 Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/458 (75%), Positives = 388/458 (84%) Query: 1 MRENLHRFFRAARGAGVRVSPAESIDAMRAVAQVGFADRDILRDTFLLTLAKTQDEKRAL 60 M+ENLHRFFRAARGAGV VSPAESIDAMRAVA +G +DR +LRD+ LLTLAK++DEK+AL Sbjct: 1 MQENLHRFFRAARGAGVHVSPAESIDAMRAVASIGLSDRTVLRDSLLLTLAKSEDEKKAL 60 Query: 61 GECFDLFFSQPEPQQENAEQSKTDDGSESGANPSADEHGDASGGSANETIGPLAQMLLSQ 120 G CFDLFF+ +P Q A+ + + S +A AN +GPLAQMLL+Q Sbjct: 61 GACFDLFFAHVDPAQPEAKDDEAPQDAASSEAQTAQPSDQPVQDEANAELGPLAQMLLAQ 120 Query: 121 DRSAISSAIANASGAASLPDIRYFTQRGIFQTRILDAMGIQRLRDDIDDLTARNPALAER 180 + + IS+AIANAS A L +IRYFTQRG+F +R+L+ MGIQRLRDD+D L RNPA AER Sbjct: 121 NTADISAAIANASSAVGLSEIRYFTQRGLFSSRMLETMGIQRLRDDLDALNDRNPAQAER 180 Query: 181 LQEALNGLRGTVRDAVSQALLLYGREEAENLRNEILRNAPLARIEPRQVEQMRTLIRQIA 240 LQ AL+GLR TVRDAV+QAL LYGREE ENLR+EILRNA L+RIEPRQV +MR LIRQIA Sbjct: 181 LQAALDGLRDTVRDAVAQALALYGREETENLRHEILRNAQLSRIEPRQVAEMRALIRQIA 240 Query: 241 RRLRERYSKPRKRQRRGHLDVRRTLRRNAAWGGVPFLTAWKRKHRDRPKIVALCDVSGSV 300 RRLRERYSKPRKRQRRGHLDVRRTLRRNAAWG VPFLTAWKR+HRDRPKIVALCDVSGSV Sbjct: 241 RRLRERYSKPRKRQRRGHLDVRRTLRRNAAWGSVPFLTAWKRRHRDRPKIVALCDVSGSV 300 Query: 301 ARVSDFFLLLIHSLHEVVDDVRSFAFSGHLIEVSDILESKSPEEAMKEIMSKVGFGSSDY 360 ARVSDFFLLLIHSLH+VV DVRSFAFSGHLIEVS+ILE KS EEAM EIM KVGFGSSDY Sbjct: 301 ARVSDFFLLLIHSLHDVVSDVRSFAFSGHLIEVSEILEQKSAEEAMAEIMHKVGFGSSDY 360 Query: 361 GNSFADFEDNWMSAITPQTTVIVLGDARSNNLDPRADILRRIGERSKRLVWLNPEGRMVW 420 G+S DFE +M+A+TPQTTVIVLGDARSN LDPRADIL+ I ER+KR+VWLNPEGRM W Sbjct: 361 GSSLVDFEKQFMAAVTPQTTVIVLGDARSNKLDPRADILKAIAERAKRVVWLNPEGRMTW 420 Query: 421 GFGDSEMPRYATFCSVVRQCATAQQLERAVSDIVATYQ 458 G+GDSEMPRY TFC+VVR CATAQQLERAVSDIV+ YQ Sbjct: 421 GWGDSEMPRYQTFCNVVRPCATAQQLERAVSDIVSAYQ 458