BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0043.0028.p (224 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_107028.1| two-component regulator [Mesorhizobium loti MAF... 277 9e-73 ref|YP_003075048.1| two-component regulator [Teredinibacter turn... 107 1e-21 ref|ZP_08882630.1| two-component system response regulator [Sacc... 106 3e-21 ref|ZP_05125147.1| two-component regulator [Rhodobacteraceae bac... 103 1e-20 ref|YP_890213.1| two-component regulator [Mycobacterium smegmati... 101 8e-20 >ref|NP_107028.1| two-component regulator [Mesorhizobium loti MAFF303099] dbj|BAB52814.1| two-component regulator [Mesorhizobium loti MAFF303099] Length = 223 Score = 277 bits (708), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 141/224 (62%), Positives = 172/224 (76%), Gaps = 1/224 (0%) Query: 1 MRIAVVTPIRLFSEGLTSSFQNHAEFAIAAAVSDLAGLRETLETGSVNVILIDVTQGIDL 60 MR+ VVTPIRLF + LT+ F E ++ A VSDL LR L ++LIDVTQGI L Sbjct: 1 MRLVVVTPIRLFGDALTACFLPRTEVSLQATVSDLTHLRILLRDVHAEIVLIDVTQGIAL 60 Query: 61 DEVRVIASDHADVALVALGLNEDRRDVVRCGRAGFSGYISRNASFDELCRALSDVASGRL 120 DEVR IAS +ALVALGL E R+DV+RCGRAGFSGY+ R+AS ++LC AL++ G+L Sbjct: 61 DEVRSIASQFPGIALVALGLQEQRQDVIRCGRAGFSGYVGRDASVEDLCCALANARCGKL 120 Query: 121 ACSAEISGGLLRALFCMERQTDTIDADQGLTRREGEVLKLIGQGMSNKEIARDLNLSLAT 180 +CSAEISGGLLRALF MER T ++ + LT+REGEVL+LIG G+SNKEIA DL++S+AT Sbjct: 121 SCSAEISGGLLRALFEMERNTRPAESTKALTQREGEVLQLIGNGLSNKEIALDLSVSVAT 180 Query: 181 VKHHVHHVLQKLGLPRRAQAMRRVREAPWIASSAAIPDRARELD 224 VKHHVH++LQKL LPRR QAMRRVREAPWIA+S + DR E D Sbjct: 181 VKHHVHNILQKLKLPRRTQAMRRVREAPWIAASPPL-DRYDEAD 223 >ref|YP_003075048.1| two-component regulator [Teredinibacter turnerae T7901] gb|ACR10676.1| two-component regulator [Teredinibacter turnerae T7901] Length = 257 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 75/226 (33%), Positives = 113/226 (50%), Gaps = 30/226 (13%) Query: 1 MRIAVVTPIRLFSEGLTSSFQNHAEFAIAAAVS----DLAGLRETLETGSVNVILIDVTQ 56 ++I +V+ I+++ EGL + AAVS D+A + +V+L+D+T Sbjct: 2 IKILIVSDIKIYREGLRQILSAKNSTEVIAAVSCSHDDIAPYY----SHRPHVVLLDMTT 57 Query: 57 GIDLDEVRVIASDHADVALVALGLNEDRRDVVRCGRAGFSGYISRNASFDELCRALSDVA 116 + I+ VA+VALG+ D ++V +AG S Y+SR AS DEL A+ D A Sbjct: 58 STSCEIATEISQLPTPVAVVALGVGSDEPNIVSYAKAGISCYVSREASVDELMAAIKDAA 117 Query: 117 SGRLACSAEISGGLLRALFCME----RQTDTIDADQG------------------LTRRE 154 G C EI+G LL L Q D + ++ LT RE Sbjct: 118 QGECHCPPEIAGVLLNTLRTAPLREVYQPDPENKNETHVKHAAASIAEGQAFYWCLTPRE 177 Query: 155 GEVLKLIGQGMSNKEIARDLNLSLATVKHHVHHVLQKLGLPRRAQA 200 +V+ L+ +G SNK+I+R L + L+TVK+HVH++L KL RA A Sbjct: 178 RQVIGLLAEGQSNKQISRTLCIELSTVKNHVHNLLIKLKAKNRAHA 223 >ref|ZP_08882630.1| two-component system response regulator [Saccharopolyspora spinosa NRRL 18395] Length = 244 Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 62/195 (31%), Positives = 106/195 (54%), Gaps = 1/195 (0%) Query: 1 MRIAVVTPIRLFSEGLTSSFQNHAEFAIAAAVSDLAGLRETLETGSVNVILIDVTQGID- 59 + + ++ R + EGL QN F + + + L L V+L+D+ D Sbjct: 8 IELIIIGATRFYREGLALVLQNTDGFVVVSTHAQPEELEPDLTARKHPVVLLDIADLPDG 67 Query: 60 LDEVRVIASDHADVALVALGLNEDRRDVVRCGRAGFSGYISRNASFDELCRALSDVASGR 119 V + + + + ++ LG+++ D++ G +GY++R S EL R +S VA+G Sbjct: 68 PSAVIALLARNPGLRIITLGVSDQEYDILAYAELGAAGYLTREHSISELIRTISSVANGE 127 Query: 120 LACSAEISGGLLRALFCMERQTDTIDADQGLTRREGEVLKLIGQGMSNKEIARDLNLSLA 179 L CS ++ L R + + + + + L+RRE EV L+ QG+SN+EI+R L ++LA Sbjct: 128 LRCSPRVAAALCRRVAELSAELQPSPSARVLSRREAEVAVLLEQGLSNQEISRRLCIALA 187 Query: 180 TVKHHVHHVLQKLGL 194 TVK+HVH++L KLGL Sbjct: 188 TVKNHVHNILDKLGL 202 >ref|ZP_05125147.1| two-component regulator [Rhodobacteraceae bacterium KLH11] gb|EEE36075.1| two-component regulator [Rhodobacteraceae bacterium KLH11] Length = 225 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 73/211 (34%), Positives = 108/211 (51%), Gaps = 7/211 (3%) Query: 1 MRIAVVTPIRLFSEGLTSSFQNHAEFAIAAAVSDLAGLRETLETGSVNVILIDVTQGIDL 60 MR+ + + RLF E L + A A DL+ + E E IL+D+ Sbjct: 1 MRVLIYSHNRLFGECLKRGLSRERDVAWVAHAVDLSRVAELEEELLGASILVDLASADVS 60 Query: 61 DEVRVIASDHADVALVALGLNEDRRD-VVRCGRAGFSGYISRNASFDELCRALSDVASGR 119 V ++ D +ALG+ E D +++C R GF G + + DELC + G Sbjct: 61 AVVEKVSLLVPDACFLALGVGEGDGDALIKCARIGFQGIVPVDTPLDELCGLIRAAQRGE 120 Query: 120 LACSAEISGGLLRALFCMERQTD---TIDAD-QGLTRREGEVLKLIGQGMSNKEIARDLN 175 + + + GL RAL ER +D + A+ + LTRRE EV L+ +G++NKEIAR+LN Sbjct: 121 MKLAPKAVAGLFRALH--ERLSDQAVIVPAEPEILTRREREVCTLVCEGLTNKEIARELN 178 Query: 176 LSLATVKHHVHHVLQKLGLPRRAQAMRRVRE 206 S+ TVK+H+H +L KL +PRR R E Sbjct: 179 RSVGTVKNHIHAILGKLEVPRRGAIPSRFME 209 >ref|YP_890213.1| two-component regulator [Mycobacterium smegmatis str. MC2 155] gb|ABK74226.1| two-component regulator [Mycobacterium smegmatis str. MC2 155] Length = 305 Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 69/200 (34%), Positives = 106/200 (53%), Gaps = 2/200 (1%) Query: 2 RIAVVTPIRLFSEGLTSSFQNHAEFAIAAAVSDLAGLRETLETGSVNVILIDVTQGIDLD 61 RI +V L+ + L + +H A A DL L ET VIL+D++ Sbjct: 91 RILIVGDCTLYRDYLAAVLASHGAVAPGVAW-DLPSLIAAYETTVPRVILLDMSTRNSAM 149 Query: 62 EVRVIASDHADVALVALGLNED-RRDVVRCGRAGFSGYISRNASFDELCRALSDVASGRL 120 +R V ++ LG++ED ++V C AG +GY R+ S +L + VA+G Sbjct: 150 LLRQALKLSPQVRVIVLGVSEDDESEIVACAEAGVAGYHLRSDSLKDLLVLIHKVAAGES 209 Query: 121 ACSAEISGGLLRALFCMERQTDTIDADQGLTRREGEVLKLIGQGMSNKEIARDLNLSLAT 180 CS +S LLR L + Q + + LT RE ++L+L+ G+SN++IA L +++ T Sbjct: 210 LCSPRVSAILLRRLSTLASQRQPVHKELVLTSREIQILRLLEMGLSNRDIAEQLCIAVHT 269 Query: 181 VKHHVHHVLQKLGLPRRAQA 200 VK+HVH +L KLG+ RAQA Sbjct: 270 VKNHVHSLLAKLGVSTRAQA 289