BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0043.0022.p (467 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_771592.1| nodulation efficiency protein D [Bradyrhizobium... 698 0.0 ref|YP_575704.1| hypothetical protein Nham_0348 [Nitrobacter ham... 613 e-173 ref|YP_002498603.1| hypothetical protein Mnod_3380 [Methylobacte... 598 e-169 ref|NP_103399.1| hypothetical protein mll1933 [Mesorhizobium lot... 495 e-138 ref|YP_004611802.1| hypothetical protein Mesop_3257 [Mesorhizobi... 493 e-137 >ref|NP_771592.1| nodulation efficiency protein D [Bradyrhizobium japonicum USDA 110] dbj|BAC50217.1| bll4952 [Bradyrhizobium japonicum USDA 110] Length = 468 Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/470 (75%), Positives = 395/470 (84%), Gaps = 14/470 (2%) Query: 4 VQTLKAALVMATALVALVVSIGPGTAADDSRLALTISIDGAIGPAAASYVKDGLAKAAER 63 +QT+KAALV A +VAL+ + P +A ++ RLAL +SIDGAIGPA+ASYVK+ LA A+ER Sbjct: 1 MQTMKAALVTAIGVVALICCLLPSSAEENGRLALIVSIDGAIGPASASYVKEALAHASER 60 Query: 64 HAEVVILRLNTPGGLSTSMREIITDVLASPVPVIGYVAPSGAHAASAGTYILYATHLAAM 123 AEVV+LR+NTPGGL++SMREI+ DVLASPVPV+GYVAPSGAHAASAGTYILYATH+AAM Sbjct: 61 RAEVVLLRINTPGGLNSSMREIVADVLASPVPVVGYVAPSGAHAASAGTYILYATHIAAM 120 Query: 124 APGTNIGAATPVQIGGPLPGLPGGTPDK---------DGKEKDGGAPSGTKDAMTAKVTN 174 A GTNIGAATPVQIGGPLPGLP GTPDK EKD KDAMTAKVTN Sbjct: 121 ASGTNIGAATPVQIGGPLPGLPSGTPDKGGKDKKDGDQQSEKDQ-----PKDAMTAKVTN 175 Query: 175 DAVAFIRSLAELRGRNADWAEKAVRDAATLSTNAALQVHVIEFTAHDPADLLRQVDGRMV 234 DAVAFIRSLAELR RN DWAEKAVR+AATLS N AL+ H I+ A D A+LLRQ+DGR+V Sbjct: 176 DAVAFIRSLAELRNRNVDWAEKAVREAATLSANGALEAHAIDLVARDQAELLRQLDGRVV 235 Query: 235 ELAGGKTQRLATRDAAIEAIDPTWLSRVLAVITDPNIAFVLLMVGIYGLIFEFMSPGAVA 294 E+AGGKTQRLAT+DA +EAIDP W+SR LAVITDPN+AF+LLMVGIYGLIFEFMSPGAVA Sbjct: 236 EVAGGKTQRLATKDAVVEAIDPGWISRFLAVITDPNVAFILLMVGIYGLIFEFMSPGAVA 295 Query: 295 PGVVGTICLLLGLYALNMLPINYAGFALMLVGIALLAIEAFNPTVVIGLGGIVAFVLGAA 354 PGVVG ICLL+GLYALN+LPINYAG ALMLVGI LL +EAFNPTVVIGLGGIVAFVLGA Sbjct: 296 PGVVGAICLLIGLYALNLLPINYAGLALMLVGIVLLTVEAFNPTVVIGLGGIVAFVLGAL 355 Query: 355 MLFRIEAPGYALSWSVIAIVAAMFAGLILVVLGALRRARNGPLRTGAQAMRGLSAEVLDW 414 MLFR+EAPGY LSW VI I A +F G LVVLG+LRRA N P R GAQAMRGL AEVLDW Sbjct: 356 MLFRVEAPGYHLSWWVIGIAATVFTGFALVVLGSLRRAANAPERVGAQAMRGLPAEVLDW 415 Query: 415 SETSGHVFTNGERWQARGTETFKAGETVEVANINDLTLVVRRAPASAGEG 464 + GHVF +GERWQARG ETFK GETVEVAN+ DLTL++RRAPA GEG Sbjct: 416 RGSEGHVFAHGERWQARGAETFKPGETVEVANVVDLTLLIRRAPARTGEG 465 >ref|YP_575704.1| hypothetical protein Nham_0348 [Nitrobacter hamburgensis X14] gb|ABE61244.1| protein of unknown function DUF107 [Nitrobacter hamburgensis X14] Length = 465 Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust. Identities = 327/443 (73%), Positives = 374/443 (84%), Gaps = 5/443 (1%) Query: 26 PGTAADDSRLALTISIDGAIGPAAASYVKDGLAKAAERHAEVVILRLNTPGGLSTSMREI 85 P + ++ +L LTI+IDGAIGPA YVKD LAKA ERHAE VILRLNTPGGL++SMREI Sbjct: 23 PASTEENGKLVLTIAIDGAIGPATTGYVKDALAKARERHAEAVILRLNTPGGLASSMREI 82 Query: 86 ITDVLASPVPVIGYVAPSGAHAASAGTYILYATHLAAMAPGTNIGAATPVQIGGPLPGLP 145 I DVLASPVPVIGYVAPSGAHAASAGTYILYATH+AAMAPGTN+GAATPVQIG P+PGLP Sbjct: 83 IADVLASPVPVIGYVAPSGAHAASAGTYILYATHIAAMAPGTNLGAATPVQIGSPVPGLP 142 Query: 146 GGTPDKDGKEKDGGA--PSGTKDAMTAKVTNDAVAFIRSLAELRGRNADWAEKAVRDAAT 203 G PDK K+K G+ P T DAMTAKVTNDAVAFIRSLAELRGRNADWAEKAVR+AA+ Sbjct: 143 G-IPDKGDKDKKNGSQQPEPT-DAMTAKVTNDAVAFIRSLAELRGRNADWAEKAVREAAS 200 Query: 204 LSTNAALQVHVIEFTAHDPADLLRQVDGRMVELAGGKTQRLATRDAAIEAIDPTWLSRVL 263 LS +AALQ V+E A PA+LLR+VDGR V+L G + LAT+DA IE IDP W+S+ L Sbjct: 201 LSASAALQAGVVELIARSPAELLRKVDGRTVDLVNGDRRHLATKDATIETIDPGWVSQFL 260 Query: 264 AVITDPNIAFVLLMVGIYGLIFEFMSPGAVAPGVVGTICLLLGLYALNMLPINYAGFALM 323 ++ITDPN+A +LL+VG YGL+FEFMSPGAVAPGVVGTICLLLGLYALN+LPI+YAG LM Sbjct: 261 SIITDPNVALILLLVGTYGLLFEFMSPGAVAPGVVGTICLLLGLYALNLLPISYAGLGLM 320 Query: 324 LVGIALLAIEAFNPTVVIGLGGIVAFVLGAAMLFRIEAPGYALSWSVIAIVAAMFAGLIL 383 ++GIALL IEAFNPTVV+GLGG++AFVLGA MLFR EA GY LSW+ + IVA+MF GL+L Sbjct: 321 MLGIALLTIEAFNPTVVLGLGGVIAFVLGALMLFRNEASGYRLSWTFVGIVASMFTGLVL 380 Query: 384 VVLGALRRARNGPLRTGAQAMRGLSAEVLDWSETSGHVFTNGERWQARGTETFKAGETVE 443 +VLG+LRRAR GP + GAQAMRGL AEVLDW++ GHVFT GERWQAR TE FK G+TVE Sbjct: 381 IVLGSLRRARKGPAQVGAQAMRGLPAEVLDWNDIEGHVFTQGERWQARSTEAFKPGDTVE 440 Query: 444 VANINDLTLVVRRAPA-SAGEGG 465 VA+I DLTL VRR PA GEGG Sbjct: 441 VASITDLTLTVRRRPALRGGEGG 463 >ref|YP_002498603.1| hypothetical protein Mnod_3380 [Methylobacterium nodulans ORS 2060] gb|ACL58300.1| protein of unknown function DUF107 [Methylobacterium nodulans ORS 2060] Length = 467 Score = 598 bits (1543), Expect = e-169, Method: Compositional matrix adjust. Identities = 348/457 (76%), Positives = 388/457 (84%), Gaps = 1/457 (0%) Query: 4 VQTLKAALVMATALVALVVSIGPGTAADDSRLALTISIDGAIGPAAASYVKDGLAKAAER 63 +QT KAA V A A+VAL+VS+ PG+A LAL ISID AIGPA+ASYVKD L A ER Sbjct: 1 MQTAKAAFVAAMAIVALIVSLRPGSAEVSGSLALIISIDRAIGPASASYVKDALVTARER 60 Query: 64 HAEVVILRLNTPGGLSTSMREIITDVLASPVPVIGYVAPSGAHAASAGTYILYATHLAAM 123 AE++ILRLNTPGGL+TSMREII DVLAS VPV+GYVAPSGAHAASAGTYILYATH+AAM Sbjct: 61 RAEIIILRLNTPGGLNTSMREIIRDVLASSVPVVGYVAPSGAHAASAGTYILYATHIAAM 120 Query: 124 APGTNIGAATPVQIGGPLPGLPGGTPDKDGKEKDGGAPS-GTKDAMTAKVTNDAVAFIRS 182 APGTNIGAATPVQIGGP+PGLPGG PDKDGK+K G KD MTAK TNDAVAFIRS Sbjct: 121 APGTNIGAATPVQIGGPIPGLPGGIPDKDGKDKKDGGRQPEAKDTMTAKATNDAVAFIRS 180 Query: 183 LAELRGRNADWAEKAVRDAATLSTNAALQVHVIEFTAHDPADLLRQVDGRMVELAGGKTQ 242 LAELRGRNADWAE+AVR+AATLS N ALQ VI+ A DPA+LLRQVDGR VE+AGGKTQ Sbjct: 181 LAELRGRNADWAERAVREAATLSANGALQASVIDLVARDPAELLRQVDGRTVEVAGGKTQ 240 Query: 243 RLATRDAAIEAIDPTWLSRVLAVITDPNIAFVLLMVGIYGLIFEFMSPGAVAPGVVGTIC 302 RL T+ A +EAIDP W+S L +I DPN+AF+LLM+GIYGLIFEFMSPGAVAPGVVGTIC Sbjct: 241 RLNTKYAILEAIDPGWISHFLTIIADPNVAFILLMIGIYGLIFEFMSPGAVAPGVVGTIC 300 Query: 303 LLLGLYALNMLPINYAGFALMLVGIALLAIEAFNPTVVIGLGGIVAFVLGAAMLFRIEAP 362 LLLGLY+LN+LPINYAGFALML+GIALL IEAFNPT+VIGLGG++AFVLGA MLFR+EAP Sbjct: 301 LLLGLYSLNLLPINYAGFALMLIGIALLTIEAFNPTIVIGLGGVIAFVLGALMLFRVEAP 360 Query: 363 GYALSWSVIAIVAAMFAGLILVVLGALRRARNGPLRTGAQAMRGLSAEVLDWSETSGHVF 422 GY LSW VI A+F G ++VVLG+LRRA GP+R GAQAMRGL AE+LDWSE GHV Sbjct: 361 GYRLSWWVIGTTVAVFVGFVVVVLGSLRRAGKGPIRVGAQAMRGLPAEILDWSENEGHVL 420 Query: 423 TNGERWQARGTETFKAGETVEVANINDLTLVVRRAPA 459 +GERWQARG ETF+ GETVEVANI DLTLVVRR A Sbjct: 421 AHGERWQARGAETFRPGETVEVANIIDLTLVVRRTSA 457 >ref|NP_103399.1| hypothetical protein mll1933 [Mesorhizobium loti MAFF303099] dbj|BAB49185.1| mll1933 [Mesorhizobium loti MAFF303099] Length = 473 Score = 495 bits (1274), Expect = e-138, Method: Compositional matrix adjust. Identities = 268/445 (60%), Positives = 332/445 (74%), Gaps = 16/445 (3%) Query: 26 PGTAADDSRLALTISIDGAIGPAAASYVKDGLAKAAERHAEVVILRLNTPGGLSTSMREI 85 P ++A ++AL+++IDGAIGPA+ +++ L AA+R A V+IL+L+TPGGL TSMRE+ Sbjct: 21 PLSSAGSEKVALSVAIDGAIGPASTRQLEEALDVAAKRDATVLILQLDTPGGLVTSMREM 80 Query: 86 ITDVLASPVPVIGYVAPSGAHAASAGTYILYATHLAAMAPGTNIGAATPVQIGGPLPGLP 145 I D+LASPVPVIGYVAP+G HAASAGTYILYATH+AAMAPGTN+GAATPV+IGG LP LP Sbjct: 81 IADILASPVPVIGYVAPAGGHAASAGTYILYATHVAAMAPGTNLGAATPVEIGG-LPSLP 139 Query: 146 GGTP---------DKDGKEKDGGAPSGTK-----DAMTAKVTNDAVAFIRSLAELRGRNA 191 GG G +K+ G G DAM AKVTNDAVA IRSLAELRGRN Sbjct: 140 GGDKGDQKTQGEQKTQGDQKNQGDQKGEDGRPAGDAMMAKVTNDAVALIRSLAELRGRNG 199 Query: 192 DWAEKAVRDAATLSTNAALQVHVIEFTAHDPADLLRQVDGRMVELAGGKTQRLATRDAAI 251 DW EKAVR+AA+LS NAALQ HVI+F AHD +LL+ DGR V++AG K LAT+ + Sbjct: 200 DWGEKAVREAASLSANAALQEHVIDFVAHDTTELLQLADGRTVDVAGKKVV-LATKGLPV 258 Query: 252 EAIDPTWLSRVLAVITDPNIAFVLLMVGIYGLIFEFMSPGAVAPGVVGTICLLLGLYALN 311 E ++P W R+LAVITDPNIA +L++VG+YG++FEF SPGAVAPGV+GTICL+LGLYAL+ Sbjct: 259 ETLEPGWFIRLLAVITDPNIAVILMLVGVYGIVFEFTSPGAVAPGVIGTICLVLGLYALD 318 Query: 312 MLPINYAGFALMLVGIALLAIEAFNPTVVIGLGGIVAFVLGAAMLFRIEAPGYALSWSVI 371 +LPINY G ALML+GIA L IEA NPTVV+G+ G+ AF+ GAAML R+E PG+A+SW+VI Sbjct: 319 LLPINYTGLALMLLGIAFLVIEALNPTVVLGVSGVAAFLFGAAMLLRVEGPGFAMSWAVI 378 Query: 372 AIVAAMFAGLILVVLGALRRARNGPLRTGAQAMRGLSAEVLDWSETSGHVFTNGERWQAR 431 AA+ GL L+ + AR P R G AMRGL E+LDW GHV GERW+A+ Sbjct: 379 GPAAALTLGLALLTGTYVWAARKNPPRVGGDAMRGLPVEILDWQGGEGHVLALGERWRAK 438 Query: 432 GTETFKAGETVEVANINDLTLVVRR 456 E AG++VEV +I+DL L VRR Sbjct: 439 AAEPIVAGDSVEVTDISDLVLTVRR 463 >ref|YP_004611802.1| hypothetical protein Mesop_3257 [Mesorhizobium opportunistum WSM2075] gb|AEH87708.1| protein of unknown function DUF107 [Mesorhizobium opportunistum WSM2075] Length = 460 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 271/435 (62%), Positives = 333/435 (76%), Gaps = 9/435 (2%) Query: 26 PGTAADDSRLALTISIDGAIGPAAASYVKDGLAKAAERHAEVVILRLNTPGGLSTSMREI 85 P +A R+AL+++IDGAIGPA+ +++ L AA R A +IL+L+TPGGL TSMRE+ Sbjct: 21 PFPSAGGERVALSVAIDGAIGPASTRQLEEALDVAARRDAAALILKLDTPGGLVTSMREM 80 Query: 86 ITDVLASPVPVIGYVAPSGAHAASAGTYILYATHLAAMAPGTNIGAATPVQIGGPLPGLP 145 I D+LASPVPVIGYVAP+G HAASAGTYILYATH+AAMAPGTN+GAATPV++GG LP LP Sbjct: 81 IADILASPVPVIGYVAPAGGHAASAGTYILYATHVAAMAPGTNLGAATPVEMGG-LPSLP 139 Query: 146 GGTPD----KDGKEKDGGAPSGTKDAMTAKVTNDAVAFIRSLAELRGRNADWAEKAVRDA 201 GG D KD K+ +G P+G DAM AKVTNDAVA IRSLAELRGRN DW EKAVR+A Sbjct: 140 GGEKDNGPAKDQKDANG-RPAG--DAMMAKVTNDAVALIRSLAELRGRNGDWGEKAVREA 196 Query: 202 ATLSTNAALQVHVIEFTAHDPADLLRQVDGRMVELAGGKTQRLATRDAAIEAIDPTWLSR 261 A+LS NAALQ HVI+ A D +LL+Q DGR V++AG K LAT +E ++P W R Sbjct: 197 ASLSANAALQEHVIDLVARDTTELLQQADGRTVDVAGRKVL-LATSGLPVETLEPGWFIR 255 Query: 262 VLAVITDPNIAFVLLMVGIYGLIFEFMSPGAVAPGVVGTICLLLGLYALNMLPINYAGFA 321 +LAVITDPN A +L++VG+YG++FEF SPGAVAPGVVGTICL+LGLYAL++LPINY G A Sbjct: 256 LLAVITDPNTAVILMLVGVYGIVFEFTSPGAVAPGVVGTICLVLGLYALDLLPINYTGLA 315 Query: 322 LMLVGIALLAIEAFNPTVVIGLGGIVAFVLGAAMLFRIEAPGYALSWSVIAIVAAMFAGL 381 LML+GI L IEAFNPTVV+GL G+ AFV GAAML R+E PG+A+SW+VI AA+ GL Sbjct: 316 LMLLGITFLVIEAFNPTVVLGLSGVAAFVFGAAMLMRVEGPGFAMSWAVIGPAAALTLGL 375 Query: 382 ILVVLGALRRARNGPLRTGAQAMRGLSAEVLDWSETSGHVFTNGERWQARGTETFKAGET 441 L+ +R R P R G +AMRG+ AE+LDW GHV GERW+A+ E +AG++ Sbjct: 376 ALLTGTYVRAVRRNPPRVGGEAMRGVPAEILDWQGGEGHVLALGERWRAKADEPIEAGDS 435 Query: 442 VEVANINDLTLVVRR 456 VEV +I+DL L VRR Sbjct: 436 VEVTDISDLVLTVRR 450