BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0043.0013.p         (782 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_767617.1| hypothetical protein bll0977 [Bradyrhizobium ja...  1152   0.0  
ref|YP_001236838.1| hypothetical protein BBta_0664 [Bradyrhizobi...  1041   0.0  
ref|YP_001208693.1| hypothetical protein BRADO6887 [Bradyrhizobi...  1035   0.0  
ref|YP_001373346.1| cell wall anchor domain-containing protein [...   746   0.0  
ref|ZP_04680229.1| Poly [ADP-ribose] polymerase 4 [Ochrobactrum ...   726   0.0  

>ref|NP_767617.1| hypothetical protein bll0977 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC46242.1| bll0977 [Bradyrhizobium japonicum USDA 110]
          Length = 754

 Score = 1152 bits (2980), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 569/753 (75%), Positives = 646/753 (85%), Gaps = 8/753 (1%)

Query: 28  MTIYDACESSPQIRLSRRMRIALFFLVEGVAALVIGFAALFVSFDPVWSAELPQQAVLRP 87
           M  YD  +S     LSR +++ LF L +G+A +++ F AL VSF   WSA   Q ++L+P
Sbjct: 1   MNTYDTADSDEHPMLSRLIKLGLFLLAQGIAVMLVAFVALLVSFGTSWSATTEQASLLQP 60

Query: 88  SDARSGSLLFKTDDGYRDALRLGVDVDLTVSGPTVRARVTQIFRNPTKDWVEATYVYPLP 147
            DARSG+LL K D    +A+RLG+D+D+TVSGPT+R RVTQ FRNPTKDWVEATYVYPL 
Sbjct: 61  GDARSGTLLLKEDGATTEAIRLGIDIDITVSGPTLRTRVTQAFRNPTKDWVEATYVYPLA 120

Query: 148 AGGAVDTLKMVVGDRVVLGDIKERQQARAIYEQAKQNGQKAALTEQERPNIFTNSVANIG 207
             GAVDTLKMVVGDRV++GDIKERQQAR IYEQA+  GQKAALTEQERPNIFTNSVANIG
Sbjct: 121 TNGAVDTLKMVVGDRVIVGDIKERQQARVIYEQARSAGQKAALTEQERPNIFTNSVANIG 180

Query: 208 PGETVLVQIEYQEPVQQNGSEFSLRVPMVVGPRYNPRPVVQSVDLRADGNGWG--TTDPV 265
           PGETVLVQIEYQEPV Q+G+E+SLRVP+VV PRYNP P+VQSVD R DG+GWG  T+DPV
Sbjct: 181 PGETVLVQIEYQEPVHQSGNEYSLRVPLVVAPRYNPAPIVQSVDFRNDGSGWGAATSDPV 240

Query: 266 PDRDRISSEVLDPAQNAPVNPTNVTVHLNAGFPLGEVKSHFHQVRIESPDSTTRIVKLAE 325
           PDR+RIS  VLDPA+NAP NPT++TV L AGF LGEVKSH H V+IESPD+ TRIV LA+
Sbjct: 241 PDRERISPTVLDPARNAPANPTSITVRLKAGFALGEVKSHHHSVKIESPDNATRIVTLAD 300

Query: 326 GPVPADRDFELTWKPAAEKAPSVGLFREHVGNSDYLLAFVTPPSVEQPQQKPLPREVIFV 385
           G VPADRDFELTWKPAA+KAPSVGLFREHVG++DYLLAFVTPPS EQ  QKPLPREV+FV
Sbjct: 301 GAVPADRDFELTWKPAAQKAPSVGLFREHVGDADYLLAFVTPPSAEQATQKPLPREVVFV 360

Query: 386 IDNSGSMGGTSIIQAKASLTYALGRLQPTDRFNVIRFDDTMDTLFPAPVAANSANIGNAT 445
           IDNSGSMGGTSI+QAKASL YALGRLQP DRFNVIRFDDTMD LFPA V A++A++G AT
Sbjct: 361 IDNSGSMGGTSIVQAKASLLYALGRLQPADRFNVIRFDDTMDVLFPASVPADAAHVGEAT 420

Query: 446 AFVSALQARGGTEMVPAMRAALSDTNHDDANYVRQVVFLTDGAIGNEQQLFETISALRGR 505
           +FVSALQARGGTEMVPAMRAAL+D    D   VRQVVFLTDGAIGNEQQLFETI+A+RGR
Sbjct: 421 SFVSALQARGGTEMVPAMRAALTD-KIGDTGMVRQVVFLTDGAIGNEQQLFETITAMRGR 479

Query: 506 SRVFMVGIGSAPNTYLMTRAAELGRGTFTHIGSVEQVDERMRGLFARLENPAVTNLSAKF 565
           SRVFMVGIGSAPNTYLMTRA+ELGRG FTHIGSVEQV+ERMRGLFA+LENPAVT LSAKF
Sbjct: 480 SRVFMVGIGSAPNTYLMTRASELGRGAFTHIGSVEQVEERMRGLFAKLENPAVTGLSAKF 539

Query: 566 SEATADLTPSALPDVYRDEPLVLAAKLDKLTGSVEIKGRIGDRPWSVTLPLANAAEGKGL 625
           SEATAD+TP+ +PDVYRDEPLVLAA+LDKL GS+EIKGR+GDRPWSVTLPL NAAEGKGL
Sbjct: 540 SEATADVTPAIIPDVYRDEPLVLAARLDKLAGSLEIKGRVGDRPWSVTLPLQNAAEGKGL 599

Query: 626 SKLWARRKIADAEVARTTRQESPEDADKTILALALEHQLVTRLTSLVAVDKTPSRPEGEP 685
           SKLWARRKI DAEVART R+ +PE+ADK ILALAL+HQ+VTRLTSLVA+DKTPSRPEGEP
Sbjct: 600 SKLWARRKIGDAEVARTMREMTPEEADKAILALALDHQIVTRLTSLVAIDKTPSRPEGEP 659

Query: 686 LKLSELPLNLPAGWDFAKLFGERPSLPAVPGERRADGGDGKVQLAALKRSPVATQAPGTI 745
           LKLSELP+NLPAGWDF K+FGERP L  VP + R    D + Q AA + +P    AP  I
Sbjct: 660 LKLSELPINLPAGWDFEKIFGERPQL--VPTQLRERHADARNQPAARRPTPA---APDAI 714

Query: 746 QLPKTATDAELKMIAGVILLTVSLLLLVFNRRQ 778
           +LPKTAT AELKMI G++L+ ++L+L VFNRRQ
Sbjct: 715 RLPKTATSAELKMIGGLVLIVLALILFVFNRRQ 747


>ref|YP_001236838.1| hypothetical protein BBta_0664 [Bradyrhizobium sp. BTAi1]
 gb|ABQ32932.1| hypothetical protein BBta_0664 [Bradyrhizobium sp. BTAi1]
          Length = 755

 Score = 1041 bits (2692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 520/721 (72%), Positives = 606/721 (84%), Gaps = 5/721 (0%)

Query: 62  IGFAALFVSFDPVWSAELPQQAVLRPSDARSGSLLFKTDDGYRDALRLGVDVDLTVSGPT 121
           +GF ALF+S  P WSAE P   + +P DARSG+LLFK+D GY +A RLG+DVD+ VSGPT
Sbjct: 37  VGFTALFLSITPGWSAEGPPAPLTKPRDARSGALLFKSDAGYAEAPRLGIDVDIIVSGPT 96

Query: 122 VRARVTQIFRNPTKDWVEATYVYPLPAGGAVDTLKMVVGDRVVLGDIKERQQARAIYEQA 181
            RARVTQ+FRN +  W+EA YVYPLP   AVDTLKM+VGDRVV+GDIK R+QA+ IYEQA
Sbjct: 97  ARARVTQLFRNTSSQWMEAVYVYPLPPDSAVDTLKMIVGDRVVIGDIKPREQAKVIYEQA 156

Query: 182 KQNGQKAALTEQERPNIFTNSVANIGPGETVLVQIEYQEPVQQNGSEFSLRVPMVVGPRY 241
           K++G+ AALTEQERPNIFTNS+ANIGPGETVLVQIEYQ+PV Q    FSLRVP+VV PRY
Sbjct: 157 KRDGKTAALTEQERPNIFTNSLANIGPGETVLVQIEYQQPVAQVDGAFSLRVPLVVAPRY 216

Query: 242 NPRPVVQSVDLRADGNGW--GTTDPVPDRDRISSEVLDPAQNAPVNPTNVTVHLNAGFPL 299
           NP P+VQSVDLR   +GW   + DPVPDRDRIS EVLDPA+  PVNPT +TV L AGF L
Sbjct: 217 NPAPIVQSVDLRPGSDGWSAASNDPVPDRDRISPEVLDPAKTDPVNPTKITVRLQAGFAL 276

Query: 300 GEVKSHFHQVRIESPDSTTRIVKLAEGPVPADRDFELTWKPAAEKAPSVGLFREHVGNSD 359
           GEVKSH HQV I+SPD+ TRIV LAEG  PADRDFELTWKPA+   PSVGLF E VG++D
Sbjct: 277 GEVKSHHHQVTIDSPDAKTRIVTLAEGVAPADRDFELTWKPASVAMPSVGLFHEQVGDAD 336

Query: 360 YLLAFVTPPSVEQPQQKPLPREVIFVIDNSGSMGGTSIIQAKASLTYALGRLQPTDRFNV 419
           YLLAF+TPP+V    Q+P PR+VIFVIDNSGSMGGTSI QAKASL YALGRLQP DRFNV
Sbjct: 337 YLLAFITPPAVAASAQRPQPRDVIFVIDNSGSMGGTSIRQAKASLLYALGRLQPNDRFNV 396

Query: 420 IRFDDTMDTLFPAPVAANSANIGNATAFVSALQARGGTEMVPAMRAALSDTNHDDANYVR 479
           IRFDDTM  LFP+ V A++ ++G+AT+FVSAL+ARGGTEMVPAMRAAL+D +  D++ VR
Sbjct: 397 IRFDDTMTVLFPSSVPADAEHVGSATSFVSALEARGGTEMVPAMRAALTD-DGSDSDRVR 455

Query: 480 QVVFLTDGAIGNEQQLFETISALRGRSRVFMVGIGSAPNTYLMTRAAELGRGTFTHIGSV 539
           QVVFLTDGAIGNEQQLFETI+A+RGRSR+FMVGIGSAPNTYLMTRAAELGRG FT IGSV
Sbjct: 456 QVVFLTDGAIGNEQQLFETITAMRGRSRIFMVGIGSAPNTYLMTRAAELGRGAFTPIGSV 515

Query: 540 EQVDERMRGLFARLENPAVTNLSAKFSEATADLTPSALPDVYRDEPLVLAAKLDKLTGSV 599
           EQV+ERMR LFA+LENP VT L+A FSEA+ADLTP+ LPDVYR+EPLVLAA++D+L GS+
Sbjct: 516 EQVEERMRDLFAKLENPVVTGLTATFSEASADLTPAVLPDVYRNEPLVLAARIDRLAGSL 575

Query: 600 EIKGRIGDRPWSVTLPLANAAEGKGLSKLWARRKIADAEVARTTRQESPEDADKTILALA 659
           ++K RIGD+PW++TLPLA AA GKGLSKLWARRKI DAEVA+T RQ +PE++D  IL LA
Sbjct: 576 QLKARIGDQPWTITLPLAGAAAGKGLSKLWARRKIGDAEVAKTMRQMTPEESDGAILRLA 635

Query: 660 LEHQLVTRLTSLVAVDKTPSRPEGEPLKLSELPLNLPAGWDFAKLFGERPSLPAVPGERR 719
           L+HQLVTRLTSLVAVDKTP RP+GEPLKL+ELP+NLPAGWDF K+FGER  +P VP ERR
Sbjct: 636 LDHQLVTRLTSLVAVDKTPRRPDGEPLKLAELPINLPAGWDFEKVFGERSRMPGVPKERR 695

Query: 720 ADGGDGKVQLAALKRSPVATQAPGTIQLPKTATDAELKMIAGVILLTVSLLLLVFNRRQT 779
           A+  DG VQ AALKR PV   AP TI LPKTAT+AEL M+ G+ +L + L+ L+  RR+T
Sbjct: 696 AE-ADGDVQFAALKR-PVVPTAPATITLPKTATNAELSMLLGLGILMLELIWLIAIRRRT 753

Query: 780 S 780
           +
Sbjct: 754 A 754


>ref|YP_001208693.1| hypothetical protein BRADO6887 [Bradyrhizobium sp. ORS 278]
 emb|CAL80478.1| conserved hypothetical protein; protein containing a von Willebrand
           factor type A (VWA) domain; putative signal peptide
           [Bradyrhizobium sp. ORS 278]
          Length = 755

 Score = 1035 bits (2677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/694 (72%), Positives = 591/694 (85%), Gaps = 5/694 (0%)

Query: 67  LFVSFDPVWSAELPQQAVLRPSDARSGSLLFKTDDGYRDALRLGVDVDLTVSGPTVRARV 126
           LF+S  P WSAE P   + +P +ARSG+LLFK+D GY +A RLG+DVD+ VSGPT RARV
Sbjct: 42  LFLSITPGWSAEGPLAPLTKPGEARSGALLFKSDAGYAEAPRLGIDVDIVVSGPTARARV 101

Query: 127 TQIFRNPTKDWVEATYVYPLPAGGAVDTLKMVVGDRVVLGDIKERQQARAIYEQAKQNGQ 186
           TQ+F+N +  W+EA YVYPLP   AVDTLKM+VGDRVV+GDIK RQ+AR IYEQA+++G+
Sbjct: 102 TQLFKNTSSQWMEAVYVYPLPPDSAVDTLKMIVGDRVVVGDIKPRQEARVIYEQARRDGK 161

Query: 187 KAALTEQERPNIFTNSVANIGPGETVLVQIEYQEPVQQNGSEFSLRVPMVVGPRYNPRPV 246
            AALTEQERPNIFTNS+ANIGPGET+LVQIEYQ+PV Q   EFSLRVP+VV PRYNP+P+
Sbjct: 162 TAALTEQERPNIFTNSLANIGPGETILVQIEYQQPVAQVAGEFSLRVPLVVAPRYNPKPI 221

Query: 247 VQSVDLRADGNGWG--TTDPVPDRDRISSEVLDPAQNAPVNPTNVTVHLNAGFPLGEVKS 304
           VQSV+LR   NGWG  + DPVPDRDRIS EVLDPA+N PVNPT +TV L AGF LGEVKS
Sbjct: 222 VQSVELRPASNGWGAASNDPVPDRDRISPEVLDPAKNDPVNPTKITVRLQAGFALGEVKS 281

Query: 305 HFHQVRIESPDSTTRIVKLAEGPVPADRDFELTWKPAAEKAPSVGLFREHVGNSDYLLAF 364
           H HQV +ES D+ TR++ LA+G VPADRDFELTWKPA+E  PSVGLF E VG++DYLLAF
Sbjct: 282 HHHQVTVESTDAETRVITLADGVVPADRDFELTWKPASENMPSVGLFHEQVGDADYLLAF 341

Query: 365 VTPPSVEQPQQKPLPREVIFVIDNSGSMGGTSIIQAKASLTYALGRLQPTDRFNVIRFDD 424
           VTPP+V    Q+P PR+VIFVIDNSGSMGGTSI QAKASL YALGRLQP DRFNVIRFDD
Sbjct: 342 VTPPAVATATQRPQPRDVIFVIDNSGSMGGTSIRQAKASLLYALGRLQPNDRFNVIRFDD 401

Query: 425 TMDTLFPAPVAANSANIGNATAFVSALQARGGTEMVPAMRAALSDTNHDDANYVRQVVFL 484
           TM  LFP+ V A++ ++GNAT FVS+L ARGGTEMVPAMRAAL+D +  D++ +RQVVFL
Sbjct: 402 TMTVLFPSSVPADAEHVGNATRFVSSLDARGGTEMVPAMRAALTD-DGSDSDRMRQVVFL 460

Query: 485 TDGAIGNEQQLFETISALRGRSRVFMVGIGSAPNTYLMTRAAELGRGTFTHIGSVEQVDE 544
           TDGAIGN+QQLFETI+A+RGRSR+FMVGIGSAPNTYLM+RAAELGRG FTHIGSVEQV+E
Sbjct: 461 TDGAIGNDQQLFETITAMRGRSRIFMVGIGSAPNTYLMSRAAELGRGAFTHIGSVEQVEE 520

Query: 545 RMRGLFARLENPAVTNLSAKFSEATADLTPSALPDVYRDEPLVLAAKLDKLTGSVEIKGR 604
           RMR LFA+LENP VT L+A FSEA+ADLTP+ LPDVYR+EPLVLAAK+D+L GS+++KGR
Sbjct: 521 RMRDLFAKLENPVVTGLTATFSEASADLTPAVLPDVYRNEPLVLAAKIDRLAGSLQLKGR 580

Query: 605 IGDRPWSVTLPLANAAEGKGLSKLWARRKIADAEVARTTRQESPEDADKTILALALEHQL 664
           IGD+PW++TLPL+ AAEGKGLSKLWARRKI DAEVA+T RQ +P++AD  IL LAL+HQL
Sbjct: 581 IGDQPWTITLPLSGAAEGKGLSKLWARRKIGDAEVAKTMRQMTPDEADGAILKLALQHQL 640

Query: 665 VTRLTSLVAVDKTPSRPEGEPLKLSELPLNLPAGWDFAKLFGERPSLPAVPGERRADGGD 724
           VTRLTSLVAVDKTP R +GEPLKL+ELP+NLPAGWDF K+FGER  +PA+  +RRA+G  
Sbjct: 641 VTRLTSLVAVDKTPRRSDGEPLKLAELPINLPAGWDFEKVFGERGRMPAMQRDRRAEGA- 699

Query: 725 GKVQLAALKRSPVATQAPGTIQLPKTATDAELKM 758
           G +QL ALKR PV    P TI LPKTATDAEL M
Sbjct: 700 GDIQLTALKR-PVVPTTPATITLPKTATDAELSM 732


>ref|YP_001373346.1| cell wall anchor domain-containing protein [Ochrobactrum anthropi
           ATCC 49188]
 gb|ABS17517.1| LPXTG-motif cell wall anchor domain protein [Ochrobactrum anthropi
           ATCC 49188]
          Length = 750

 Score =  746 bits (1926), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/661 (58%), Positives = 481/661 (72%), Gaps = 23/661 (3%)

Query: 59  ALVIGFAALFVSFDPVW-SAELPQQAVLRPSDARSGSLLFKTDDG--YRDALRLGVDVDL 115
           AL+   A +F     V  SAE P  A++RP++ +SGSLL +T++   Y +A RL  DV+L
Sbjct: 30  ALLPALAVIFCLLQIVQASAETP--ALVRPNEVQSGSLLLETNEAGRYVEAPRLATDVNL 87

Query: 116 TVSGPTVRARVTQIFRNPTKDWVEATYVYPLPAGGAVDTLKMVVGDRVVLGDIKERQQAR 175
            VSGPT RAR+TQ F NPT  +VEA YV+PLP   AV +LKMV+GDRV++ DIKE+Q+AR
Sbjct: 88  DVSGPTARARLTQAFENPTNGFVEALYVFPLPEESAVYSLKMVIGDRVIVADIKEKQKAR 147

Query: 176 AIYEQAKQNGQKAALTEQERPNIFTNSVANIGPGETVLVQIEYQEPVQQNGSEFSLRVPM 235
            IYEQAK  G+KA L EQ+RPN+FTN+VANIGP E V++QIEYQ+ V+ +   FSLRVP+
Sbjct: 148 EIYEQAKSEGKKATLIEQQRPNVFTNAVANIGPHEKVVIQIEYQQAVRLSDERFSLRVPL 207

Query: 236 VVGPRYNP---RPVVQSVDLRADGNGWGTTDPVPDRDRISSEVLDPAQNAP-----VNPT 287
           VV PRYNP    PVVQ V+++   NGWG +      D  ++ ++ P   AP      NP 
Sbjct: 208 VVAPRYNPDNASPVVQEVEIK---NGWGKSRDTGKPDTYNTPLVTPL--APPTALRTNPV 262

Query: 288 NVTVHLNAGFPLGEVKSHFHQVRIESPDSTTRIVKLAEGPVPADRDFELTWKPAAEKAPS 347
            ++V L AGFPLG+V+S FH+VRI++ +  TR + L +G   ADRDF L W   A  AP 
Sbjct: 263 TISVKLKAGFPLGKVESLFHKVRIDTTNDATREITL-DGAAAADRDFVLEWSAVASDAPQ 321

Query: 348 VGLFREHVGNSDYLLAFVTPPSVEQPQQKPLPREVIFVIDNSGSMGGTSIIQAKASLTYA 407
           VGLFREH+G  DY+LA+VTPP++  P  K + REVIFVIDNSGSMGGTSI QAKASL YA
Sbjct: 322 VGLFREHIGKDDYVLAYVTPPALASP--KKVQREVIFVIDNSGSMGGTSIEQAKASLDYA 379

Query: 408 LGRLQPTDRFNVIRFDDTMDTLFPAPVAANSANIGNATAFVSALQARGGTEMVPAMRAAL 467
           L +LQP DRFNVIRFDDT+   F   V AN  NI +A  FV++L+A+GGTEM+PA+ AAL
Sbjct: 380 LSQLQPGDRFNVIRFDDTLTKFFEDSVDANQENIASARRFVTSLEAQGGTEMLPALHAAL 439

Query: 468 SDTNHDDANYVRQVVFLTDGAIGNEQQLFETISALRGRSRVFMVGIGSAPNTYLMTRAAE 527
            D+N    N +RQ+VFLTDG I NEQQL + ++A RGRSR+FMVGIGSAPN+YLM RAAE
Sbjct: 440 DDSNQ--GNGLRQIVFLTDGEISNEQQLLDAVAARRGRSRIFMVGIGSAPNSYLMNRAAE 497

Query: 528 LGRGTFTHIGSVEQVDERMRGLFARLENPAVTNLSAKFSEATADLTPSALPDVYRDEPLV 587
           LGRGTFTHIGS  +VDERMR LF +LENPAVT+L A FSE    +TPS LPD+YR EPLV
Sbjct: 498 LGRGTFTHIGSAAEVDERMRALFDKLENPAVTDLKANFSEKNVSMTPSLLPDLYRGEPLV 557

Query: 588 LAAKLDKLTGSVEIKGRIGDRPWSVTLPLANAAEGKGLSKLWARRKIADAEVARTTRQES 647
           +AA++ K  G++ I+G+I  RPW+V LPL  A   +G+SKLWARRKI DAEV  T  + S
Sbjct: 558 IAARMGKAIGNLAIEGQIDGRPWTVNLPLDQAMNAEGISKLWARRKIDDAEVELTLGKIS 617

Query: 648 PEDADKTILALALEHQLVTRLTSLVAVDKTPSRPEGEPLKLSELPLNLPAGWDFAKLFGE 707
            + AD  IL LALEH LV+RLTSLVAVDKTPSRP   PL  +++PL LPAGWD+ KLF  
Sbjct: 618 QDAADARILHLALEHHLVSRLTSLVAVDKTPSRPANSPLTRADIPLQLPAGWDYDKLFDI 677

Query: 708 R 708
           R
Sbjct: 678 R 678


>ref|ZP_04680229.1| Poly [ADP-ribose] polymerase 4 [Ochrobactrum intermedium LMG 3301]
 gb|EEQ95735.1| Poly [ADP-ribose] polymerase 4 [Ochrobactrum intermedium LMG 3301]
          Length = 777

 Score =  726 bits (1875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/731 (54%), Positives = 501/731 (68%), Gaps = 32/731 (4%)

Query: 59  ALVIGFAALFVSFDPVWS-AELPQQAVLRPSDARSGSLLFKTDDG--YRDALRLGVDVDL 115
           AL+   A +F     V + AE P   ++ P++ +SGSLL +T +   Y +A RL  DV+L
Sbjct: 57  ALLPALAVIFCLLQIVQARAETP--GLVTPNEVQSGSLLLETSEAGRYVEAPRLATDVNL 114

Query: 116 TVSGPTVRARVTQIFRNPTKDWVEATYVYPLPAGGAVDTLKMVVGDRVVLGDIKERQQAR 175
            VSGPTVRAR+TQ F NPT  +VEA YV+PLP   AV +LKMV+GDRVV+ DIKE+Q AR
Sbjct: 115 DVSGPTVRARLTQAFENPTDSFVEALYVFPLPEESAVYSLKMVIGDRVVVADIKEKQAAR 174

Query: 176 AIYEQAKQNGQKAALTEQERPNIFTNSVANIGPGETVLVQIEYQEPVQQNGSEFSLRVPM 235
            IYE+AK  G+KA L EQ+RPN+FTN+VANIGP E V++QIEYQ+ V+     FSLRVP+
Sbjct: 175 EIYEKAKSEGKKATLIEQQRPNVFTNAVANIGPHEKVVIQIEYQQAVRLADERFSLRVPL 234

Query: 236 VVGPRYNPR---PVVQSVDLRADGNGWGTTDPVPDRDRISSEV---LDPAQNAPVNPTNV 289
           VV PRYNP    PVVQ V+++   NGWG +      D  ++ +   L P      NP ++
Sbjct: 235 VVAPRYNPNIASPVVQKVEMQ---NGWGKSSDAGKPDPYNAPIVTPLTPPAELRTNPVSI 291

Query: 290 TVHLNAGFPLGEVKSHFHQVRIESPDSTTRIVKLAEGPVPADRDFELTWKPAAEKAPSVG 349
           +V L  GFPLG+V+S +H+VRIE+ +  TR + L +G   ADRDF L W   A  AP VG
Sbjct: 292 SVELKPGFPLGKVESLYHKVRIETTNDATREITL-DGTAAADRDFVLEWSAVANDAPQVG 350

Query: 350 LFREHVGNSDYLLAFVTPPSVEQPQQKPLPREVIFVIDNSGSMGGTSIIQAKASLTYALG 409
           LFREHVG  DY+LA+VTPP+V     K   REV+FVIDNSGSMGGTSI QAKASL YAL 
Sbjct: 351 LFREHVGKDDYVLAYVTPPAV--ASAKKAQREVVFVIDNSGSMGGTSIEQAKASLDYALS 408

Query: 410 RLQPTDRFNVIRFDDTMDTLFPAPVAANSANIGNATAFVSALQARGGTEMVPAMRAALSD 469
            LQP DRFNVIRFDDT+   F   V A+  NI +A  FV +L+A+GGT M+PA+ AAL D
Sbjct: 409 HLQPGDRFNVIRFDDTLTRFFEVSVEASQQNIASARHFVMSLEAQGGTAMLPALHAALDD 468

Query: 470 TNHDDANYVRQVVFLTDGAIGNEQQLFETISALRGRSRVFMVGIGSAPNTYLMTRAAELG 529
           ++    N +RQ+VFLTDG I NEQQL + I+A RGRSR+FMVGIG+APN+YLM  AAELG
Sbjct: 469 SHQ--GNGLRQIVFLTDGEISNEQQLLDAIAARRGRSRIFMVGIGTAPNSYLMNHAAELG 526

Query: 530 RGTFTHIGSVEQVDERMRGLFARLENPAVTNLSAKFSEATADLTPSALPDVYRDEPLVLA 589
           RGTFTHIGS  +VDERMR LF +LENPAVT+L A FSE    +TPS LPD+YR EPLV+A
Sbjct: 527 RGTFTHIGSAAEVDERMRALFDKLENPAVTDLKANFSEKNVSMTPSILPDLYRGEPLVIA 586

Query: 590 AKLDKLTGSVEIKGRIGDRPWSVTLPLANAAEGKGLSKLWARRKIADAEVARTTRQESPE 649
           A++ K  G++ I+G+I  RPW+V LPL  A + +G+SKLWARRKI DAEV  T  + S +
Sbjct: 587 ARMGKAAGNLVIEGQIDGRPWTVNLPLDQAMKAEGISKLWARRKIDDAEVELTLGKISQD 646

Query: 650 DADKTILALALEHQLVTRLTSLVAVDKTPSRPEGEPLKLSELPLNLPAGWDFAKLFGERP 709
            A+  IL LALEH LV+RLTSLVAVDKTPSRP   PL  +++PL LPAGWD+ KLFG R 
Sbjct: 647 AANARILRLALEHHLVSRLTSLVAVDKTPSRPANTPLTRADIPLQLPAGWDYDKLFGIR- 705

Query: 710 SLPAVPGERRAD---GGDGKVQLAALK---RSPVATQAPGTIQLPKTATDAELKMIAGVI 763
                  ER  +   G D K   A ++   R    +     + LP+TAT A L ++ G+ 
Sbjct: 706 ------AERNVEEHAGMDVKGVSAPVRSHERLASPSSPSQPLPLPQTATPATLLLMQGLG 759

Query: 764 LLTVSLLLLVF 774
            + V L +L F
Sbjct: 760 SMLVGLFVLWF 770