BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0043.0012.p (254 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001236839.1| hypothetical protein BBta_0665 [Bradyrhizobi... 389 e-106 ref|YP_001208692.1| hypothetical protein BRADO6886 [Bradyrhizobi... 384 e-105 ref|NP_767618.1| hypothetical protein blr0978 [Bradyrhizobium ja... 367 1e-99 ref|YP_001757803.1| helix-turn-helix domain-containing protein [... 276 2e-72 ref|XP_002540261.1| conserved hypothetical protein [Ricinus comm... 262 4e-68 >ref|YP_001236839.1| hypothetical protein BBta_0665 [Bradyrhizobium sp. BTAi1] gb|ABQ32933.1| hypothetical protein BBta_0665 [Bradyrhizobium sp. BTAi1] Length = 256 Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust. Identities = 190/254 (74%), Positives = 221/254 (87%) Query: 1 MPTPDKQLSAEQSRQVAETIREEIARRRISRQALAEQAKLSLSTLEKVLGGRRPFTLATT 60 M P+ +LS E SRQVAETIREEIARRR+SRQALAEQAKLSLSTLEK LGGRRPFTLAT Sbjct: 1 MSIPENELSDELSRQVAETIREEIARRRMSRQALAEQAKLSLSTLEKALGGRRPFTLATI 60 Query: 61 VRLEQALGVSLRKLPETITVAAPANGGIAPDSLGSYSRRAVARIEGTYITVRPSFGEQGA 120 VRLEQALG++LRK P A A+GGIAPDSLGSYSRRAV IEGTY+T+RPSFG++ A Sbjct: 61 VRLEQALGMALRKAPSPPVAAPGASGGIAPDSLGSYSRRAVEWIEGTYVTLRPSFGDKEA 120 Query: 121 LYAYRTEITWDEASSSLGFREGERQDADYTQYGEVAVPNESGFVYLVTNRHGQHRVITVS 180 +YAYRT+I WD+A+SSL FREG R DA +TQ+GEVAVPN+SGFVYLVTNRHGQHR+ITVS Sbjct: 121 IYAYRTDIVWDDAASSLVFREGARLDAAFTQFGEVAVPNQSGFVYLVTNRHGQHRLITVS 180 Query: 181 RPRNSGEMYGIITTLLAGRGSLLTPVAAPIAFLPVKNVPKPSLGRVSADDANYAAYREHL 240 RP +GEMYGIITTLLAGRGSLLTP+AAP+A LP++NV PS GR+ ADD ++A YREHL Sbjct: 181 RPTITGEMYGIITTLLAGRGSLLTPIAAPVALLPLRNVVAPSFGRLGADDPHFALYREHL 240 Query: 241 RRTIDEPFAIFLPG 254 R+T++EPFA+F+ G Sbjct: 241 RKTLEEPFALFVQG 254 >ref|YP_001208692.1| hypothetical protein BRADO6886 [Bradyrhizobium sp. ORS 278] emb|CAL80477.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278] Length = 257 Score = 384 bits (986), Expect = e-105, Method: Compositional matrix adjust. Identities = 190/255 (74%), Positives = 219/255 (85%), Gaps = 1/255 (0%) Query: 1 MPTPD-KQLSAEQSRQVAETIREEIARRRISRQALAEQAKLSLSTLEKVLGGRRPFTLAT 59 M PD +LS EQSRQVAETIREEIARRR+SRQ LAEQAKLSLSTLEK LGGRRPFTLAT Sbjct: 1 MSNPDTNELSDEQSRQVAETIREEIARRRMSRQTLAEQAKLSLSTLEKALGGRRPFTLAT 60 Query: 60 TVRLEQALGVSLRKLPETITVAAPANGGIAPDSLGSYSRRAVARIEGTYITVRPSFGEQG 119 VRLEQALG+SLR+ P A +GGIAPDSLGSYSRRAV IEGTY+T+RPSFG++ Sbjct: 61 IVRLEQALGMSLRRAPSAPAAAPAPSGGIAPDSLGSYSRRAVEWIEGTYVTLRPSFGDKQ 120 Query: 120 ALYAYRTEITWDEASSSLGFREGERQDADYTQYGEVAVPNESGFVYLVTNRHGQHRVITV 179 A+Y+YRT+I WD+A++SL FREG R DA ++Q+GEVAVPN+SGFVYLVTNRHGQHR+ITV Sbjct: 121 AIYSYRTDILWDDAAASLVFREGARLDAAFSQFGEVAVPNQSGFVYLVTNRHGQHRLITV 180 Query: 180 SRPRNSGEMYGIITTLLAGRGSLLTPVAAPIAFLPVKNVPKPSLGRVSADDANYAAYREH 239 SRP +GEMYGIITTLLAGRGSLLTP+AAPIA LP++NV +PS GR+ ADD NY YREH Sbjct: 181 SRPTITGEMYGIITTLLAGRGSLLTPIAAPIALLPLRNVAEPSFGRLGADDVNYQLYREH 240 Query: 240 LRRTIDEPFAIFLPG 254 LR+T DEPFA+F+ G Sbjct: 241 LRKTTDEPFALFVQG 255 >ref|NP_767618.1| hypothetical protein blr0978 [Bradyrhizobium japonicum USDA 110] dbj|BAC46243.1| blr0978 [Bradyrhizobium japonicum USDA 110] Length = 255 Score = 367 bits (941), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 180/250 (72%), Positives = 211/250 (84%), Gaps = 2/250 (0%) Query: 5 DKQLSAEQSRQVAETIREEIARRRISRQALAEQAKLSLSTLEKVLGGRRPFTLATTVRLE 64 DKQLS EQ R++AETIREE+ARRRISRQALAEQAKLSLSTLEKVLGGRRPFTLATTVRLE Sbjct: 8 DKQLSDEQCREIAETIREELARRRISRQALAEQAKLSLSTLEKVLGGRRPFTLATTVRLE 67 Query: 65 QALGVSLRKLPETITVAAPANGGIAPDSLGSYSRRAVARIEGTYITVRPSFGEQGALYAY 124 QALGVSLRK + VA PA +APDSLGSY+ RAV +E YIT+RPSFG++ A++AY Sbjct: 68 QALGVSLRK--SVVVVAPPAANDVAPDSLGSYAHRAVTWLEDVYITLRPSFGDKDAIFAY 125 Query: 125 RTEITWDEASSSLGFREGERQDADYTQYGEVAVPNESGFVYLVTNRHGQHRVITVSRPRN 184 RTEI W+ SSL FREG+R DA Y GEVAVP++SGF+YLV +HGQHRVITVSRP Sbjct: 126 RTEILWEPKVSSLVFREGDRTDAAYEHTGEVAVPHQSGFIYLVIIKHGQHRVITVSRPTV 185 Query: 185 SGEMYGIITTLLAGRGSLLTPVAAPIAFLPVKNVPKPSLGRVSADDANYAAYREHLRRTI 244 +GEMYGII+TL AG GS LTP+AAPIA++P++NVP PSLGRV++ DANY YR+HLRRT+ Sbjct: 186 AGEMYGIISTLRAGPGSQLTPIAAPIAYVPLRNVPTPSLGRVASGDANYELYRKHLRRTV 245 Query: 245 DEPFAIFLPG 254 +EPFA+FLP Sbjct: 246 EEPFALFLPA 255 >ref|YP_001757803.1| helix-turn-helix domain-containing protein [Methylobacterium radiotolerans JCM 2831] gb|ACB27120.1| helix-turn-helix domain protein [Methylobacterium radiotolerans JCM 2831] Length = 250 Score = 276 bits (706), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 142/248 (57%), Positives = 177/248 (71%), Gaps = 4/248 (1%) Query: 7 QLSAEQSRQVAETIREEIARRRISRQALAEQAKLSLSTLEKVLGGRRPFTLATTVRLEQA 66 +LS QSR +A+T+RE +ARRRISRQ LAE+A++S+STLEK L GRRPFTLATT+RLE+A Sbjct: 5 ELSEAQSRAIAQTVREALARRRISRQTLAEEARISISTLEKALAGRRPFTLATTIRLEEA 64 Query: 67 LGVSLRKLPETITVAAPANGGIAPDSLGSYSRRAVARIEGTYITVRPSFGEQGALYAYRT 126 LG SLR+ T P APD LGSYSR +VA IEG Y+T+RPSFG GA++AYRT Sbjct: 65 LGQSLRQETGRPT---PEAARHAPDELGSYSRESVAWIEGRYLTLRPSFGTAGAIFAYRT 121 Query: 127 EITWDEASSSLGFREGERQDADYTQYGEVAVPNESGFVYLVTNRHGQHRVITVSRPRNSG 186 EI WD ++ L FRE ER DA + Q G VAVP++SG +YLVTN HGQHR+ + RP G Sbjct: 122 EIAWDADAARLVFREAERLDAPFAQSGSVAVPSQSGMIYLVTNWHGQHRLAVLCRPNIQG 181 Query: 187 EMYGIITTLLAGRGSLLTPVAAPIAFLPVKNVPKPSLGRVSADDANYAAYREHLRRTIDE 246 EMYG++TTL AGRG+ LTP A+P+A LP + GR+ D+ YA YR HL R D+ Sbjct: 182 EMYGVLTTLHAGRGTQLTPAASPLALLP-EQAGAHGYGRIGPDEPGYAPYRAHLARVHDD 240 Query: 247 PFAIFLPG 254 +A F G Sbjct: 241 GYATFFTG 248 >ref|XP_002540261.1| conserved hypothetical protein [Ricinus communis] gb|EEF22122.1| conserved hypothetical protein [Ricinus communis] Length = 252 Score = 262 bits (669), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 136/251 (54%), Positives = 177/251 (70%), Gaps = 3/251 (1%) Query: 4 PDKQLSAEQSRQVAETIREEIARRRISRQALAEQAKLSLSTLEKVLGGRRPFTLATTVRL 63 P+ +L EQS +A +RE +ARRR+SRQ LA++A++S+STLEK L GRR FTLATT+RL Sbjct: 5 PEAELPDEQSLAIAARVREALARRRMSRQQLADRARISISTLEKALSGRRSFTLATTIRL 64 Query: 64 EQALGVSLRKLPETITVAAPANGGIAPDSLGSYSRRAVARIEGTYITVRPSFGEQGALYA 123 E+AL LR A A G+AP++LG+YSR AV +EG Y+T+RPSF + A+YA Sbjct: 65 EEALEQPLRA---AAPAAPVAVTGLAPEALGAYSRPAVTWLEGEYLTLRPSFEDPAAVYA 121 Query: 124 YRTEITWDEASSSLGFREGERQDADYTQYGEVAVPNESGFVYLVTNRHGQHRVITVSRPR 183 YRTEI WD+A+SSL FRE RQDA++TQ G V++ N+SG YL+TN GQ R+I + RP Sbjct: 122 YRTEIVWDDAASSLVFREAARQDAEFTQRGAVSLSNQSGHTYLITNEQGQFRLIILGRPA 181 Query: 184 NSGEMYGIITTLLAGRGSLLTPVAAPIAFLPVKNVPKPSLGRVSADDANYAAYREHLRRT 243 GEMYG++TTL G+GS LTP AAPIAF+P++ V + + GRV D A Y YR L R Sbjct: 182 IGGEMYGMLTTLQVGQGSHLTPAAAPIAFVPLRRVAQAAFGRVGPDAAAYGDYRSALARV 241 Query: 244 IDEPFAIFLPG 254 D+ FA F G Sbjct: 242 TDKGFARFFAG 252