BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0043.0011.p (407 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767619.1| hypothetical protein bll0979 [Bradyrhizobium ja... 711 0.0 ref|YP_001208691.1| branched chain amino acid ABC transporter su... 697 0.0 ref|YP_001236840.1| ABC transporter substrate-binding protein [B... 692 0.0 ref|YP_570685.1| extracellular ligand-binding receptor [Rhodopse... 688 0.0 ref|YP_575708.1| extracellular ligand-binding receptor [Nitrobac... 607 e-172 >ref|NP_767619.1| hypothetical protein bll0979 [Bradyrhizobium japonicum USDA 110] dbj|BAC46244.1| bll0979 [Bradyrhizobium japonicum USDA 110] Length = 466 Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/390 (88%), Positives = 367/390 (94%), Gaps = 2/390 (0%) Query: 19 STQAAFAQKKYDTGASDTEIKIGNVEAYSGPASAYGVIGKTEEAYFKMINDQGGRHQRRK 78 S Q A+AQK+YDTGASDTEIKIGNVEAYSGPASAYGVIGKTEEAYFKMINDQGG + R K Sbjct: 78 SVQGAYAQKRYDTGASDTEIKIGNVEAYSGPASAYGVIGKTEEAYFKMINDQGGINGR-K 136 Query: 79 INWISYDDGYSPPKTVEQIRKLIESDEVFLVFNALGTPTQTAVQKYHNAKKVPQLFLATG 138 INWISYDDGYSPPKTVEQ+RKLIESDEVFLVFNALGTPTQTAVQKYHNAKK+PQLFLATG Sbjct: 137 INWISYDDGYSPPKTVEQVRKLIESDEVFLVFNALGTPTQTAVQKYHNAKKIPQLFLATG 196 Query: 139 ASKWNDPKDFPWTMGFQPSYRVEARIFGKYILKAKPDAKVAIFYANDDFGKDYLVGLKEI 198 ASKWNDP++FPWTMGFQPSYRVEARIF KYILK KPDAKVAIFYANDDFGKDY+ G+K++ Sbjct: 197 ASKWNDPQNFPWTMGFQPSYRVEARIFAKYILKEKPDAKVAIFYANDDFGKDYVAGIKDV 256 Query: 199 L-DKSSVKIVAEESYETTEPSIDSHIVKLKDTGADVFVNISTPKFAAQAIKKIAELNWKP 257 DK+S IVAEESYET EPSIDSHIVKLK TGADVFVNISTPKFAAQAIKKIAEL WKP Sbjct: 257 FGDKASKLIVAEESYETWEPSIDSHIVKLKGTGADVFVNISTPKFAAQAIKKIAELEWKP 316 Query: 258 VQVMTDVSISIGAVMKPAGLEASEGVLSAGYLKDASDPQWKNDEGMKKFMAFAEKYMPGA 317 + +MTDVS+SIGAVMKPAGLEASEGVLSAGYLKDASDPQWK+DEGMKKFMAF +KYMPGA Sbjct: 317 MHLMTDVSVSIGAVMKPAGLEASEGVLSAGYLKDASDPQWKDDEGMKKFMAFIDKYMPGA 376 Query: 318 NLADANLVYGYAAAQTMVQVLKQAGDNLTRENVMKQAASLKDFTPDTLIPGIRINTSATD 377 N++DANLVYGYAAAQTMVQVLKQAGDNLTRENVMKQAASLKDF PDTLIPGI+INTS TD Sbjct: 377 NISDANLVYGYAAAQTMVQVLKQAGDNLTRENVMKQAASLKDFAPDTLIPGIKINTSPTD 436 Query: 378 FAPVEQLKMMQFKNGQWELFGDIISAETGG 407 FAP+EQLKM +FKNGQWELFG IISAE G Sbjct: 437 FAPIEQLKMWRFKNGQWELFGPIISAEPSG 466 >ref|YP_001208691.1| branched chain amino acid ABC transporter substrate-binding protein [Bradyrhizobium sp. ORS 278] emb|CAL80476.1| Putative ABC transporter, substrate-binding protein; putative branched-chain amino acid transporter [Bradyrhizobium sp. ORS 278] Length = 410 Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/408 (84%), Positives = 375/408 (91%), Gaps = 2/408 (0%) Query: 1 MKTTTLPLLAAATALCLLSTQAAFAQKKYDTGASDTEIKIGNVEAYSGPASAYGVIGKTE 60 M T TL AAA A +L++ +A AQKKYDTGA+DTEIKIGNVEAYSGPASAYG+IGKTE Sbjct: 4 MTTRTLLSFAAAAAFSVLASHSALAQKKYDTGATDTEIKIGNVEAYSGPASAYGIIGKTE 63 Query: 61 EAYFKMINDQGGRHQRRKINWISYDDGYSPPKTVEQIRKLIESDEVFLVFNALGTPTQTA 120 EAYFKMINDQGG + R KIN+ISYDDGYSPPKTVEQ+RKLIESDEVFLVFNALGTPTQTA Sbjct: 64 EAYFKMINDQGGVNGR-KINFISYDDGYSPPKTVEQVRKLIESDEVFLVFNALGTPTQTA 122 Query: 121 VQKYHNAKKVPQLFLATGASKWNDPKDFPWTMGFQPSYRVEARIFGKYILKAKPDAKVAI 180 VQKYHN+KKVPQLFLATGASKWNDPKDFPWTMGFQPSYRVEARIF KYILK KP+AK+AI Sbjct: 123 VQKYHNSKKVPQLFLATGASKWNDPKDFPWTMGFQPSYRVEARIFAKYILKEKPNAKIAI 182 Query: 181 FYANDDFGKDYLVGLKEIL-DKSSVKIVAEESYETTEPSIDSHIVKLKDTGADVFVNIST 239 FYANDDFGKDY++G+KE+L DK+ +VAEESYET+EPSID+HIVKLK TGADVFVNI+T Sbjct: 183 FYANDDFGKDYVLGIKEVLGDKAKTMLVAEESYETSEPSIDAHIVKLKGTGADVFVNIAT 242 Query: 240 PKFAAQAIKKIAELNWKPVQVMTDVSISIGAVMKPAGLEASEGVLSAGYLKDASDPQWKN 299 PKFAAQAIKKIAEL WKP+ VMTDVSISIGAVMKPAGLEASEGVLSAGYLKD SDPQWK+ Sbjct: 243 PKFAAQAIKKIAELEWKPMHVMTDVSISIGAVMKPAGLEASEGVLSAGYLKDPSDPQWKD 302 Query: 300 DEGMKKFMAFAEKYMPGANLADANLVYGYAAAQTMVQVLKQAGDNLTRENVMKQAASLKD 359 DEGMKKFMAF +KYMPGAN++DANL YGYAAAQTMVQ LKQ GDNLTRENVMKQAASLKD Sbjct: 303 DEGMKKFMAFIDKYMPGANISDANLAYGYAAAQTMVQTLKQCGDNLTRENVMKQAASLKD 362 Query: 360 FTPDTLIPGIRINTSATDFAPVEQLKMMQFKNGQWELFGDIISAETGG 407 F PDTLIPGI++NT DFAP+EQLKMMQFK G+W+LFGDIISA+ GG Sbjct: 363 FAPDTLIPGIKVNTGPNDFAPIEQLKMMQFKGGKWDLFGDIISADVGG 410 >ref|YP_001236840.1| ABC transporter substrate-binding protein [Bradyrhizobium sp. BTAi1] gb|ABQ32934.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Bradyrhizobium sp. BTAi1] Length = 410 Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/408 (83%), Positives = 377/408 (92%), Gaps = 2/408 (0%) Query: 1 MKTTTLPLLAAATALCLLSTQAAFAQKKYDTGASDTEIKIGNVEAYSGPASAYGVIGKTE 60 M T TL LAAA A +L++Q+A AQKKYDTG +DTEIKIGNVEAYSGPASAYG+IGKTE Sbjct: 4 MTTRTLLSLAAAAAFSVLASQSALAQKKYDTGVTDTEIKIGNVEAYSGPASAYGIIGKTE 63 Query: 61 EAYFKMINDQGGRHQRRKINWISYDDGYSPPKTVEQIRKLIESDEVFLVFNALGTPTQTA 120 EAYFKMINDQGG + RR IN+ISYDDGYSPPKTVEQ+RKLIESDEVFLVFNALGTPTQTA Sbjct: 64 EAYFKMINDQGGINGRR-INFISYDDGYSPPKTVEQVRKLIESDEVFLVFNALGTPTQTA 122 Query: 121 VQKYHNAKKVPQLFLATGASKWNDPKDFPWTMGFQPSYRVEARIFGKYILKAKPDAKVAI 180 VQKYHNAKKVPQLFLATGASKWN+PK+FPWTMGFQPSYRVEARIF KYILK KP+AK+AI Sbjct: 123 VQKYHNAKKVPQLFLATGASKWNEPKEFPWTMGFQPSYRVEARIFAKYILKEKPNAKIAI 182 Query: 181 FYANDDFGKDYLVGLKEIL-DKSSVKIVAEESYETTEPSIDSHIVKLKDTGADVFVNIST 239 FYANDDFGKDYL+G+KE+L DK+ IVAEESYET+EPSID+HIVK+K TGADVFVNI+T Sbjct: 183 FYANDDFGKDYLLGIKEVLGDKAKTMIVAEESYETSEPSIDAHIVKVKGTGADVFVNIAT 242 Query: 240 PKFAAQAIKKIAELNWKPVQVMTDVSISIGAVMKPAGLEASEGVLSAGYLKDASDPQWKN 299 PKFAAQAIKKIAEL+WKP+ +MTDVSISIGAVMKPAGL+ASEGVLSAGYLKD SDPQWK+ Sbjct: 243 PKFAAQAIKKIAELDWKPMHLMTDVSISIGAVMKPAGLDASEGVLSAGYLKDPSDPQWKD 302 Query: 300 DEGMKKFMAFAEKYMPGANLADANLVYGYAAAQTMVQVLKQAGDNLTRENVMKQAASLKD 359 DEGM+KFMAF +KYMPGAN++DANL YGYAAAQTMVQ LKQ GDNLTRENVMKQAASLKD Sbjct: 303 DEGMEKFMAFIDKYMPGANISDANLAYGYAAAQTMVQTLKQCGDNLTRENVMKQAASLKD 362 Query: 360 FTPDTLIPGIRINTSATDFAPVEQLKMMQFKNGQWELFGDIISAETGG 407 F PDTLIPGI++NT DFAP+EQLKMMQFK G+W+LFGDIISA+ GG Sbjct: 363 FAPDTLIPGIKVNTGPNDFAPIEQLKMMQFKGGKWDLFGDIISADVGG 410 >ref|YP_570685.1| extracellular ligand-binding receptor [Rhodopseudomonas palustris BisB5] gb|ABE40784.1| Extracellular ligand-binding receptor [Rhodopseudomonas palustris BisB5] Length = 409 Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/406 (81%), Positives = 368/406 (90%), Gaps = 2/406 (0%) Query: 3 TTTLPLLAAATALCLLSTQAAFAQKKYDTGASDTEIKIGNVEAYSGPASAYGVIGKTEEA 62 ++ L +L+AA L S+ A AQKKYD G SDTEIKIGNVEAYSGPASAYGVIGKTE+A Sbjct: 5 SSRLAVLSAAAMLFAASSHGALAQKKYDPGVSDTEIKIGNVEAYSGPASAYGVIGKTEDA 64 Query: 63 YFKMINDQGGRHQRRKINWISYDDGYSPPKTVEQIRKLIESDEVFLVFNALGTPTQTAVQ 122 YFKMINDQGG + R KI +ISYDD YSPPKTVEQ+RKLIESDEVFLVFNALGTPTQTAVQ Sbjct: 65 YFKMINDQGGINGR-KIKFISYDDAYSPPKTVEQVRKLIESDEVFLVFNALGTPTQTAVQ 123 Query: 123 KYHNAKKVPQLFLATGASKWNDPKDFPWTMGFQPSYRVEARIFGKYILKAKPDAKVAIFY 182 KYHN KKVPQLF+ATGASKWNDPKDFPW+MGFQPSYRVEAR+F KYILK KP+AKVA+FY Sbjct: 124 KYHNVKKVPQLFVATGASKWNDPKDFPWSMGFQPSYRVEARVFAKYILKEKPNAKVAVFY 183 Query: 183 ANDDFGKDYLVGLKEILDKSSVKI-VAEESYETTEPSIDSHIVKLKDTGADVFVNISTPK 241 ANDDFGKDYL+GLK++ +S KI VAEESYET+EPSID+HIVKLK TGADVFVNISTPK Sbjct: 184 ANDDFGKDYLIGLKDVFGANSSKIIVAEESYETSEPSIDAHIVKLKGTGADVFVNISTPK 243 Query: 242 FAAQAIKKIAELNWKPVQVMTDVSISIGAVMKPAGLEASEGVLSAGYLKDASDPQWKNDE 301 FAAQAIKK+AEL+WKP+ +MTDVSISIGAVMKPAGL+ASEGVLSAGYLKDASD QW NDE Sbjct: 244 FAAQAIKKMAELDWKPMHLMTDVSISIGAVMKPAGLDASEGVLSAGYLKDASDSQWDNDE 303 Query: 302 GMKKFMAFAEKYMPGANLADANLVYGYAAAQTMVQVLKQAGDNLTRENVMKQAASLKDFT 361 GMKKF AF +K MPGAN+AD NLVYGY AAQTMVQVLKQAGDNLTRENVMKQAAS+KDF Sbjct: 304 GMKKFKAFLDKNMPGANIADTNLVYGYTAAQTMVQVLKQAGDNLTRENVMKQAASIKDFA 363 Query: 362 PDTLIPGIRINTSATDFAPVEQLKMMQFKNGQWELFGDIISAETGG 407 DTL+PGI+INTSATDFAP+EQL+MM+F G+WE+FG+IISAETGG Sbjct: 364 ADTLLPGIKINTSATDFAPIEQLQMMRFTKGKWEMFGEIISAETGG 409 >ref|YP_575708.1| extracellular ligand-binding receptor [Nitrobacter hamburgensis X14] gb|ABE61248.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Nitrobacter hamburgensis X14] Length = 410 Score = 607 bits (1566), Expect = e-172, Method: Compositional matrix adjust. Identities = 289/387 (74%), Positives = 334/387 (86%), Gaps = 2/387 (0%) Query: 22 AAFAQKKYDTGASDTEIKIGNVEAYSGPASAYGVIGKTEEAYFKMINDQGGRHQRRKINW 81 +A A+ KYD+GASDTEI+IG+ YSGPASAYGVIGKTE AYF+M+ND+GG + R KI++ Sbjct: 25 SALAEGKYDSGASDTEIRIGSTMPYSGPASAYGVIGKTEAAYFRMVNDKGGINGR-KIDF 83 Query: 82 ISYDDGYSPPKTVEQIRKLIESDEVFLVFNALGTPTQTAVQKYHNAKKVPQLFLATGASK 141 ISYDD YSPPK VEQ RKLIESD+V FNALGT TQTAVQKY N KK PQLF+A+GASK Sbjct: 84 ISYDDAYSPPKAVEQTRKLIESDDVLFTFNALGTATQTAVQKYMNGKKAPQLFVASGASK 143 Query: 142 WNDPKDFPWTMGFQPSYRVEARIFGKYILKAKPDAKVAIFYANDDFGKDYLVGLKEIL-D 200 WNDPK FPWTMG+QPSYRVEARIF KYILK +PDA+VA+FYANDDFGKDY+ GLK+I + Sbjct: 144 WNDPKQFPWTMGWQPSYRVEARIFAKYILKTRPDARVAVFYANDDFGKDYVSGLKDIFGE 203 Query: 201 KSSVKIVAEESYETTEPSIDSHIVKLKDTGADVFVNISTPKFAAQAIKKIAELNWKPVQV 260 + S + A+ESYE +EPSI SHIV+LKD+GADV VNISTPKFAAQAIKK AE+ WKP+Q+ Sbjct: 204 RWSSIVAAKESYENSEPSIASHIVRLKDSGADVLVNISTPKFAAQAIKKAAEIGWKPMQL 263 Query: 261 MTDVSISIGAVMKPAGLEASEGVLSAGYLKDASDPQWKNDEGMKKFMAFAEKYMPGANLA 320 +T+VSIS GAVMKPAG+EASEGVLSAGYLKDASDPQW NDE MK F AF +KYMPGANL+ Sbjct: 264 LTNVSISSGAVMKPAGVEASEGVLSAGYLKDASDPQWVNDEDMKTFTAFVDKYMPGANLS 323 Query: 321 DANLVYGYAAAQTMVQVLKQAGDNLTRENVMKQAASLKDFTPDTLIPGIRINTSATDFAP 380 D +L+YG+A AQT+ QVL+Q GD+LTRENVMKQAASLKDF P TL+PGIRINT A DFAP Sbjct: 324 DTHLIYGFAVAQTVEQVLRQCGDDLTRENVMKQAASLKDFVPSTLMPGIRINTGAADFAP 383 Query: 381 VEQLKMMQFKNGQWELFGDIISAETGG 407 +EQL+MMQFKNG+W FGD I A TGG Sbjct: 384 IEQLRMMQFKNGRWVFFGDTIGAGTGG 410