BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0043.0010.p (513 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767620.1| acid-CoA ligase [Bradyrhizobium japonicum USDA ... 892 0.0 ref|YP_001236841.1| putative O-succinylbenzoate--CoA ligase [Bra... 886 0.0 ref|YP_001208690.1| putative O-succinylbenzoate--CoA ligase [Bra... 882 0.0 ref|YP_004107160.1| AMP-dependent synthetase and ligase [Rhodops... 716 0.0 ref|YP_001989847.1| AMP-dependent synthetase and ligase [Rhodops... 714 0.0 >ref|NP_767620.1| acid-CoA ligase [Bradyrhizobium japonicum USDA 110] dbj|BAC46245.1| bll0980 [Bradyrhizobium japonicum USDA 110] Length = 534 Score = 892 bits (2305), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/510 (83%), Positives = 463/510 (90%) Query: 1 LPVRYYDWIAHHRRRTPDKMALVDLASGRRFSYKELDARVSRLGAWLRDALKVARGDRVA 60 L VRYYDWIAHH RRTP K+A++DLAS RRF+Y +LDARVSRL ++L LKV+RGDRVA Sbjct: 19 LAVRYYDWIAHHGRRTPGKVAVIDLASERRFTYSQLDARVSRLASFLCHTLKVSRGDRVA 78 Query: 61 VLALNTTDTLELQFACFRIGAIFLPLNTRLTVPELRYITGDAAPKVMVHDDDLAETALAV 120 VLALNTTDTLE+QFAC R+GAIF+PLNTRLTVPEL++IT D APKVM+HD DLAETAL+V Sbjct: 79 VLALNTTDTLEVQFACGRLGAIFVPLNTRLTVPELQFITADCAPKVMIHDADLAETALSV 138 Query: 121 AKLCDVAATVRLGPGGAYEAGIAAATPLERFEEVMLDDISTIMYTSGTTGQPKGAIITHG 180 AKLC VA ++ LGPGGAYEAGIAAA PL+R EEV LDD+STIMYTSGTTG PKGA ITHG Sbjct: 139 AKLCGVATSLLLGPGGAYEAGIAAAKPLDRIEEVTLDDVSTIMYTSGTTGHPKGATITHG 198 Query: 181 MTFWNCVNLGGPAYISPASVLLTVLPLFHTGGLNCYTNPVLHAGGTVLIMRAFDPGEALK 240 MTFWNCVNLGGPA I P+SVLLTVLPLFHTGGLNCYTNPVLHAGGTV+IMRAFDPG AL Sbjct: 199 MTFWNCVNLGGPACIGPSSVLLTVLPLFHTGGLNCYTNPVLHAGGTVMIMRAFDPGTALG 258 Query: 241 LISDPAQGINVFFGVPAIYQFMAQHPAFASADFSRLVIGGVGGAPMPVPLLKTWEARGVA 300 LI+DPAQGINVFFGVPAIYQFMAQHPAFA+ D +RL++GGVGGAPMPVPLLK WEARGVA Sbjct: 259 LINDPAQGINVFFGVPAIYQFMAQHPAFATTDLTRLIVGGVGGAPMPVPLLKVWEARGVA 318 Query: 301 LQQGYGMTETSPAVMVLDREDAARKAGSSGKPVLHTEVRIVRPDGSDAAVGELGELWVKG 360 LQQGYGMTETSPAV+VLDREDAARKAGS+GKPVLHTEVRIVRPDGSDA VGELGELWVKG Sbjct: 319 LQQGYGMTETSPAVLVLDREDAARKAGSAGKPVLHTEVRIVRPDGSDADVGELGELWVKG 378 Query: 361 PNITPGYWNRPDANASSFTDGWLHTGDATRIDEEGFYYIVDRWKDMYISGGENVYPAEVE 420 PNITPGYWNRP+AN SSFTDGWLHTGDATRIDEEGFYYIVDRWKDMYISGGENVYPAEVE Sbjct: 379 PNITPGYWNRPEANKSSFTDGWLHTGDATRIDEEGFYYIVDRWKDMYISGGENVYPAEVE 438 Query: 421 SVLHQLAAVAEAAVIGIPDEQWGEVGMAIIAVKPSHSLTPAEVHAHCQANLARFKCPRLI 480 +VLHQL A+AEAAVIGIPD QWGEVG+AI+AVKP LT +V AHC ANLARFKCPR I Sbjct: 439 NVLHQLGAIAEAAVIGIPDPQWGEVGLAIVAVKPGQRLTETDVFAHCAANLARFKCPRQI 498 Query: 481 EFIEVLPRNATGKIHKPTLRQQFSRPKPTD 510 F++ LPRNATGKIHKPTLR++FS D Sbjct: 499 RFVDALPRNATGKIHKPTLRKEFSAASEVD 528 >ref|YP_001236841.1| putative O-succinylbenzoate--CoA ligase [Bradyrhizobium sp. BTAi1] gb|ABQ32935.1| putative O-succinylbenzoate--CoA ligase [Bradyrhizobium sp. BTAi1] Length = 516 Score = 886 bits (2290), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/510 (81%), Positives = 458/510 (89%) Query: 1 LPVRYYDWIAHHRRRTPDKMALVDLASGRRFSYKELDARVSRLGAWLRDALKVARGDRVA 60 +PVRYYDWIAHH RRTP K A+VDL S RRF+Y E DARV L + LRD V +GDRVA Sbjct: 1 MPVRYYDWIAHHARRTPAKTAMVDLGSNRRFTYAEFDARVGLLASHLRDVCGVGKGDRVA 60 Query: 61 VLALNTTDTLELQFACFRIGAIFLPLNTRLTVPELRYITGDAAPKVMVHDDDLAETALAV 120 VLALN TDTLE+QFACFR+GAIF+PLNTRLTVPEL++I GDAAPKVM+HDDDLA+TA +V Sbjct: 61 VLALNATDTLEVQFACFRVGAIFVPLNTRLTVPELQFIVGDAAPKVMIHDDDLADTAQSV 120 Query: 121 AKLCDVAATVRLGPGGAYEAGIAAATPLERFEEVMLDDISTIMYTSGTTGQPKGAIITHG 180 ++LC VA T+R G G+YE IAAA PL E V LDD+STIMYTSGTTGQPKGA+ITHG Sbjct: 121 SRLCGVATTLRYGATGSYEQAIAAAKPLATIEPVTLDDVSTIMYTSGTTGQPKGAMITHG 180 Query: 181 MTFWNCVNLGGPAYISPASVLLTVLPLFHTGGLNCYTNPVLHAGGTVLIMRAFDPGEALK 240 MTF+NCVNLGGPAYI+P+SVLLTVLPLFHTGGLNCYTNPV+H GGTVLIMRAFDPG AL+ Sbjct: 181 MTFYNCVNLGGPAYITPSSVLLTVLPLFHTGGLNCYTNPVMHVGGTVLIMRAFDPGLALQ 240 Query: 241 LISDPAQGINVFFGVPAIYQFMAQHPAFASADFSRLVIGGVGGAPMPVPLLKTWEARGVA 300 LISDPA+GINVFFGVPAIYQFMAQHPAFA+ADFSRLVIGGVGGAPMPVPLL TWEARGVA Sbjct: 241 LISDPARGINVFFGVPAIYQFMAQHPAFATADFSRLVIGGVGGAPMPVPLLHTWEARGVA 300 Query: 301 LQQGYGMTETSPAVMVLDREDAARKAGSSGKPVLHTEVRIVRPDGSDAAVGELGELWVKG 360 LQQGYGMTETSPAV+ LDREDA RKAGS+GKPVLHTEVRIVRPDG+DA VGELGELWV+G Sbjct: 301 LQQGYGMTETSPAVLALDREDAGRKAGSAGKPVLHTEVRIVRPDGTDADVGELGELWVRG 360 Query: 361 PNITPGYWNRPDANASSFTDGWLHTGDATRIDEEGFYYIVDRWKDMYISGGENVYPAEVE 420 PN+TPGYWNRPDAN SSFTDGWLHTGDATR+D+EGFYYIVDRWKDMYISGGENVYPAEVE Sbjct: 361 PNVTPGYWNRPDANRSSFTDGWLHTGDATRVDDEGFYYIVDRWKDMYISGGENVYPAEVE 420 Query: 421 SVLHQLAAVAEAAVIGIPDEQWGEVGMAIIAVKPSHSLTPAEVHAHCQANLARFKCPRLI 480 +VLHQL AVAEAAVIGIPD QWGE GMAIIAVKP H+L+ AE+HAHCQANLARFKCPR + Sbjct: 421 NVLHQLGAVAEAAVIGIPDPQWGETGMAIIAVKPGHTLSEAEIHAHCQANLARFKCPRTV 480 Query: 481 EFIEVLPRNATGKIHKPTLRQQFSRPKPTD 510 F++ LPRNATGKIHKPTLR+ F+ D Sbjct: 481 RFVDALPRNATGKIHKPTLRKSFATASAVD 510 >ref|YP_001208690.1| putative O-succinylbenzoate--CoA ligase [Bradyrhizobium sp. ORS 278] emb|CAL80475.1| putative O-succinylbenzoate--CoA ligase [Bradyrhizobium sp. ORS 278] Length = 516 Score = 882 bits (2280), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/510 (80%), Positives = 459/510 (90%) Query: 1 LPVRYYDWIAHHRRRTPDKMALVDLASGRRFSYKELDARVSRLGAWLRDALKVARGDRVA 60 +PVRYYDWIAHH RRTP K+A+VDL SGRRFSY E DARV+RL LRD +A+GDRV Sbjct: 1 MPVRYYDWIAHHARRTPTKIAMVDLGSGRRFSYAEFDARVARLAGHLRDTCDLAKGDRVT 60 Query: 61 VLALNTTDTLELQFACFRIGAIFLPLNTRLTVPELRYITGDAAPKVMVHDDDLAETALAV 120 VLALN TDTLE+QFACFR+GAIF+PLNTRLTVPEL++I GD APK+M+HDDDLA+TALAV Sbjct: 61 VLALNATDTLEVQFACFRVGAIFVPLNTRLTVPELQFIVGDCAPKLMIHDDDLADTALAV 120 Query: 121 AKLCDVAATVRLGPGGAYEAGIAAATPLERFEEVMLDDISTIMYTSGTTGQPKGAIITHG 180 ++LC V + +R GPGG+YE IA A PL E V LDD+STIMYTSGTTGQPKGA+ITHG Sbjct: 121 SRLCGVGSALRYGPGGSYEQAIATAKPLAAVEPVTLDDVSTIMYTSGTTGQPKGAMITHG 180 Query: 181 MTFWNCVNLGGPAYISPASVLLTVLPLFHTGGLNCYTNPVLHAGGTVLIMRAFDPGEALK 240 MTF+NCVNLGGPAYI+P+SVLLTVLPLFHTGGLNCYTNPVLH G TVLIMRAFDPG+AL+ Sbjct: 181 MTFYNCVNLGGPAYITPSSVLLTVLPLFHTGGLNCYTNPVLHVGATVLIMRAFDPGQALQ 240 Query: 241 LISDPAQGINVFFGVPAIYQFMAQHPAFASADFSRLVIGGVGGAPMPVPLLKTWEARGVA 300 LISD AQGINVFFGVPAIYQFMAQHPAFA+ADFSRLVIGGVGGAPMPVPLL+TWE RGVA Sbjct: 241 LISDRAQGINVFFGVPAIYQFMAQHPAFATADFSRLVIGGVGGAPMPVPLLETWEKRGVA 300 Query: 301 LQQGYGMTETSPAVMVLDREDAARKAGSSGKPVLHTEVRIVRPDGSDAAVGELGELWVKG 360 LQQGYGMTETSPAV+ LDREDAARKAGS+GKPVLHTEVRIVRPDGSDA VGELGELWV+G Sbjct: 301 LQQGYGMTETSPAVLALDREDAARKAGSAGKPVLHTEVRIVRPDGSDAEVGELGELWVRG 360 Query: 361 PNITPGYWNRPDANASSFTDGWLHTGDATRIDEEGFYYIVDRWKDMYISGGENVYPAEVE 420 PN+TPGYWNRPDAN +SFTDGWLHTGDATR+D+EGFYYIVDRWKDMYISGGENVYPAEVE Sbjct: 361 PNVTPGYWNRPDANRASFTDGWLHTGDATRVDDEGFYYIVDRWKDMYISGGENVYPAEVE 420 Query: 421 SVLHQLAAVAEAAVIGIPDEQWGEVGMAIIAVKPSHSLTPAEVHAHCQANLARFKCPRLI 480 SVLH+L+AVAEAAVIGI D QWGE GMAI+AVKP +L+ A++ AHCQANLARFKCPR + Sbjct: 421 SVLHRLSAVAEAAVIGIADPQWGETGMAIVAVKPGQTLSEADIFAHCQANLARFKCPRTV 480 Query: 481 EFIEVLPRNATGKIHKPTLRQQFSRPKPTD 510 F++ LPRNATGKIHKPTLR+ F+ D Sbjct: 481 RFVDALPRNATGKIHKPTLRKSFAIASAVD 510 >ref|YP_004107160.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris DX-1] gb|ADU42427.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris DX-1] Length = 508 Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/506 (67%), Positives = 403/506 (79%), Gaps = 3/506 (0%) Query: 5 YYDWIAHHRRRTPDKMALVDLASGRRFSYKELDARVSRLGAWLRDALKVARGDRVAVLAL 64 Y+DWIAHH P+++A+VDLA+ R SY+ +D RV RL A L L V RGDRVAVLAL Sbjct: 5 YFDWIAHHAEVRPERIAVVDLATSRNISYRAMDERVDRLAAHLA-TLGVGRGDRVAVLAL 63 Query: 65 NTTDTLELQFACFRIGAIFLPLNTRLTVPELRYITGDAAPKVMVHDDDLAETALAVAKLC 124 NT +TLE+QFACFRIGA+F+PLN RLTV EL YI GDAAP+V+ HDD+LA A + C Sbjct: 64 NTVETLEVQFACFRIGAVFVPLNVRLTVHELSYIVGDAAPRVLAHDDELAPMAAELKAAC 123 Query: 125 DVAATVRLGPGGAYEAGIAAATPLERFEEVMLDDISTIMYTSGTTGQPKGAIITHGMTFW 184 V + GP AYEA +AA+ L E V DD+STIMYTSGTTG+PKGA+ITHGMTF Sbjct: 124 GVPHLLAFGP--AYEAALAASPRLGAAEPVTFDDVSTIMYTSGTTGKPKGAMITHGMTFI 181 Query: 185 NCVNLGGPAYISPASVLLTVLPLFHTGGLNCYTNPVLHAGGTVLIMRAFDPGEALKLISD 244 N VNLG P ++S +V L VLPLFHTGGLNCYTNPVLHAGGT L+MR FDPG AL +I D Sbjct: 182 NAVNLGIPIFVSQRTVFLCVLPLFHTGGLNCYTNPVLHAGGTTLLMRTFDPGAALSIIGD 241 Query: 245 PAQGINVFFGVPAIYQFMAQHPAFASADFSRLVIGGVGGAPMPVPLLKTWEARGVALQQG 304 P+ G+ FFGVP+IYQFM QHPAF++ D SRL I GVGGAPMPVPLLK W+ RG AL QG Sbjct: 242 PSVGLTHFFGVPSIYQFMCQHPAFSATDLSRLQIAGVGGAPMPVPLLKIWQDRGCALVQG 301 Query: 305 YGMTETSPAVMVLDREDAARKAGSSGKPVLHTEVRIVRPDGSDAAVGELGELWVKGPNIT 364 YGMTETSPAV++LD +DAARKAGS+GKPVLH +++IV PDG GE+GELWVKGPNIT Sbjct: 302 YGMTETSPAVLMLDADDAARKAGSAGKPVLHADLKIVGPDGEPVKPGEMGELWVKGPNIT 361 Query: 365 PGYWNRPDANASSFTDGWLHTGDATRIDEEGFYYIVDRWKDMYISGGENVYPAEVESVLH 424 PGYWNRPDAN SSFTDGWLHTGDA R+D+EGFYYIVDR KDMYISGGENVYPAEVE VL+ Sbjct: 362 PGYWNRPDANRSSFTDGWLHTGDAARVDDEGFYYIVDRTKDMYISGGENVYPAEVEDVLY 421 Query: 425 QLAAVAEAAVIGIPDEQWGEVGMAIIAVKPSHSLTPAEVHAHCQANLARFKCPRLIEFIE 484 QL +AEAAVIG PD QWGE G+A++A+KP H L+ A++ +HC+ LARFKCP+ + F+E Sbjct: 422 QLPEIAEAAVIGAPDPQWGETGVAVVALKPGHELSEAKLLSHCRERLARFKCPQRVTFVE 481 Query: 485 VLPRNATGKIHKPTLRQQFSRPKPTD 510 LPRNATGK+HKPTLR++ +P D Sbjct: 482 ALPRNATGKVHKPTLRERILAREPAD 507 >ref|YP_001989847.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris TIE-1] gb|ACE99371.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris TIE-1] Length = 508 Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/499 (68%), Positives = 402/499 (80%), Gaps = 3/499 (0%) Query: 5 YYDWIAHHRRRTPDKMALVDLASGRRFSYKELDARVSRLGAWLRDALKVARGDRVAVLAL 64 Y+DWIAHH P+++A+VDLA+ R+ SY+ +D RV RL A L AL V RGDRVAVLAL Sbjct: 5 YFDWIAHHAEVRPERIAVVDLATSRKISYRAMDERVDRLAAHLA-ALGVGRGDRVAVLAL 63 Query: 65 NTTDTLELQFACFRIGAIFLPLNTRLTVPELRYITGDAAPKVMVHDDDLAETALAVAKLC 124 N +TLE+QFACFR+GAIF+PLN RLTV EL YI GDAAP+V+ HDD+LA A + C Sbjct: 64 NAVETLEVQFACFRLGAIFVPLNVRLTVHELSYIVGDAAPRVLAHDDELAPMATELKAAC 123 Query: 125 DVAATVRLGPGGAYEAGIAAATPLERFEEVMLDDISTIMYTSGTTGQPKGAIITHGMTFW 184 V + GP AYEA +AA+ L E V LDD+STIMYTSGTTG+PKGA+ITHGMTF Sbjct: 124 SVPHLLAFGP--AYEAALAASPLLGASEPVTLDDVSTIMYTSGTTGKPKGAMITHGMTFI 181 Query: 185 NCVNLGGPAYISPASVLLTVLPLFHTGGLNCYTNPVLHAGGTVLIMRAFDPGEALKLISD 244 N VNLG PA+IS +V L VLPLFHTGGLNCYTNPVLHAGGT L+MRAFDPG AL +I D Sbjct: 182 NAVNLGIPAFISQRTVFLCVLPLFHTGGLNCYTNPVLHAGGTTLLMRAFDPGAALSIIGD 241 Query: 245 PAQGINVFFGVPAIYQFMAQHPAFASADFSRLVIGGVGGAPMPVPLLKTWEARGVALQQG 304 P+ G+ FFGVP+IYQFM QH AFA+ D RL I GVGGAPMPVPLLK W+ RG AL QG Sbjct: 242 PSVGLTHFFGVPSIYQFMCQHAAFAATDLLRLQIAGVGGAPMPVPLLKIWQERGCALVQG 301 Query: 305 YGMTETSPAVMVLDREDAARKAGSSGKPVLHTEVRIVRPDGSDAAVGELGELWVKGPNIT 364 YGMTETSPAV++LD +DAARKAGS+GKPVLH +++IV PDG+ GE+GELWVKGPNIT Sbjct: 302 YGMTETSPAVLMLDADDAARKAGSAGKPVLHADLKIVGPDGAPVKPGEMGELWVKGPNIT 361 Query: 365 PGYWNRPDANASSFTDGWLHTGDATRIDEEGFYYIVDRWKDMYISGGENVYPAEVESVLH 424 PGYWNRPDAN +SFTDGWLHTGDA R+D+EGFYYIVDR KDMYISGGENVYPAEVE VL+ Sbjct: 362 PGYWNRPDANRTSFTDGWLHTGDAARVDDEGFYYIVDRTKDMYISGGENVYPAEVEDVLY 421 Query: 425 QLAAVAEAAVIGIPDEQWGEVGMAIIAVKPSHSLTPAEVHAHCQANLARFKCPRLIEFIE 484 QL +AEAAVIG PD QWGE G+A++A+KP L+ A++ AHC+ LARFKCP+ + F+E Sbjct: 422 QLPEIAEAAVIGAPDPQWGETGVAVVALKPGQELSEAKLLAHCRERLARFKCPQRVSFVE 481 Query: 485 VLPRNATGKIHKPTLRQQF 503 LPRNATGK+HKPTLR++ Sbjct: 482 ALPRNATGKVHKPTLRERI 500