BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0043.0007.p (369 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001236843.1| putative acyl-CoA dehydrogenase [Bradyrhizob... 677 0.0 ref|YP_001208688.1| putative acyl-CoA dehydrogenase [Bradyrhizob... 676 0.0 ref|NP_767622.1| acyl-CoA dehydrogenase [Bradyrhizobium japonicu... 648 0.0 ref|YP_533067.1| acyl-CoA dehydrogenase-like protein [Rhodopseud... 648 0.0 ref|YP_781171.1| acyl-CoA dehydrogenase domain-containing protei... 644 0.0 >ref|YP_001236843.1| putative acyl-CoA dehydrogenase [Bradyrhizobium sp. BTAi1] gb|ABQ32937.1| putative acyl-CoA dehydrogenase [Bradyrhizobium sp. BTAi1] Length = 389 Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/389 (83%), Positives = 345/389 (88%), Gaps = 20/389 (5%) Query: 1 MLFTADHDEPRRALQKFIAAEINPHVDEWEKA--------------------KKPVEFGG 40 MLFTADHDEPRR LQKFIAAEINPHVDEWE A KPVEFGG Sbjct: 1 MLFTADHDEPRRILQKFIAAEINPHVDEWEAAGIFPAHELFKKLGSLGFLGLNKPVEFGG 60 Query: 41 QGLDYSYALMMAEELGAITCGGVPMAIGVQTDMATPALARFGSDEVRREFLVPAIAGDQV 100 QGLDYSYALMMAEELGAITCGGVPMAIGVQTDMATPALARFGSDE+RREFL PA++GD V Sbjct: 61 QGLDYSYALMMAEELGAITCGGVPMAIGVQTDMATPALARFGSDELRREFLAPAVSGDAV 120 Query: 101 ACIGVSEPGAGSDVASIKTHARSDGDDYVINGGKMWITNGTQADWICLLANTSDGQVHRN 160 C+GVSE GAGSDVASIKT ARSDGDDYVINGGKMW TNGTQADW+CLLANT DG VHRN Sbjct: 121 VCLGVSETGAGSDVASIKTTARSDGDDYVINGGKMWTTNGTQADWMCLLANTGDGPVHRN 180 Query: 161 KSLICVPMKTRGVQVARKLDKLGMRSSDTAQIFFDNVRVPKRNRIGEEGQGFTYQMIQFQ 220 KSLI VPMKT+GVQ+ARKLDKLGM SSDTAQIFFDNVRVPKRNR+GEEGQGFTYQM+QFQ Sbjct: 181 KSLIIVPMKTKGVQIARKLDKLGMHSSDTAQIFFDNVRVPKRNRVGEEGQGFTYQMLQFQ 240 Query: 221 EERLWGAAACLKAHEFIINQTIDYTRGRKAFGGSILDNQVVHFKLAEMQTEVELLRSLIY 280 EERLWGAAACLK+HE+II +TI+YTR RK FG S+LDNQVVHFKLAEMQTEVELLR+LIY Sbjct: 241 EERLWGAAACLKSHEYIIAKTIEYTRERKVFGRSVLDNQVVHFKLAEMQTEVELLRALIY 300 Query: 281 RAGEALVAGEDVTRLATMAKLKAGRLGRELTDACLQYWGGMGFTNETPVSRAYRDSRLTS 340 RA EAL+AGEDVTRLATMAKLKAGRLGRELTDACLQYWGGMGF NETPVSRAYRD+RLTS Sbjct: 301 RAAEALIAGEDVTRLATMAKLKAGRLGRELTDACLQYWGGMGFMNETPVSRAYRDARLTS 360 Query: 341 IGGGVDEVMLMVLCKMMGTLPGLKQKGNA 369 IGGG DEVML +LCKMMGTLPG + GNA Sbjct: 361 IGGGADEVMLTILCKMMGTLPGTGKAGNA 389 >ref|YP_001208688.1| putative acyl-CoA dehydrogenase [Bradyrhizobium sp. ORS 278] emb|CAL80473.1| putative acyl-CoA dehydrogenase [Bradyrhizobium sp. ORS 278] Length = 389 Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/389 (83%), Positives = 344/389 (88%), Gaps = 20/389 (5%) Query: 1 MLFTADHDEPRRALQKFIAAEINPHVDEWEKA--------------------KKPVEFGG 40 MLFTADHDEPRR LQKFIAAEINPHVDEWE+A KPVEFGG Sbjct: 1 MLFTADHDEPRRILQKFIAAEINPHVDEWEEAGIFPAHELFKKLGDLGFLGLNKPVEFGG 60 Query: 41 QGLDYSYALMMAEELGAITCGGVPMAIGVQTDMATPALARFGSDEVRREFLVPAIAGDQV 100 QGLDYSYALMMAEELGAI CG +PMAIGVQTDMATPALARFGSD VR+EFL PAI+GD V Sbjct: 61 QGLDYSYALMMAEELGAINCGAIPMAIGVQTDMATPALARFGSDTVRKEFLAPAISGDYV 120 Query: 101 ACIGVSEPGAGSDVASIKTHARSDGDDYVINGGKMWITNGTQADWICLLANTSDGQVHRN 160 ACIGVSEPGAGSDVASIKT AR+DGDDYVINGGKMWITNGTQAD+ICLLANTSDG VHRN Sbjct: 121 ACIGVSEPGAGSDVASIKTQARADGDDYVINGGKMWITNGTQADFICLLANTSDGPVHRN 180 Query: 161 KSLICVPMKTRGVQVARKLDKLGMRSSDTAQIFFDNVRVPKRNRIGEEGQGFTYQMIQFQ 220 KSLICVPMK+RGVQVARKLDK+GMRSSDTAQIFFDNVRVPKRNR+GEEG GFTYQM+QFQ Sbjct: 181 KSLICVPMKSRGVQVARKLDKMGMRSSDTAQIFFDNVRVPKRNRVGEEGMGFTYQMMQFQ 240 Query: 221 EERLWGAAACLKAHEFIINQTIDYTRGRKAFGGSILDNQVVHFKLAEMQTEVELLRSLIY 280 EERLW AACLKAHE IIN TI+YTR RKAFG SILDNQVVHF+LAE+QTEVELLR+L Y Sbjct: 241 EERLWAGAACLKAHEAIINATIEYTRNRKAFGRSILDNQVVHFRLAELQTEVELLRALTY 300 Query: 281 RAGEALVAGEDVTRLATMAKLKAGRLGRELTDACLQYWGGMGFTNETPVSRAYRDSRLTS 340 +A EALVAGEDVTRLATM KLK GRLGRELTDACLQYWGGMGF NETPVSRAYRDSRL+S Sbjct: 301 QAAEALVAGEDVTRLATMVKLKTGRLGRELTDACLQYWGGMGFMNETPVSRAYRDSRLSS 360 Query: 341 IGGGVDEVMLMVLCKMMGTLPGLKQKGNA 369 IGGG DEVML +LCKMMGTLPG+ + GNA Sbjct: 361 IGGGADEVMLTILCKMMGTLPGMAKAGNA 389 >ref|NP_767622.1| acyl-CoA dehydrogenase [Bradyrhizobium japonicum USDA 110] dbj|BAC46247.1| acyl-CoA dehydrogenase [Bradyrhizobium japonicum USDA 110] Length = 345 Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust. Identities = 314/337 (93%), Positives = 322/337 (95%), Gaps = 2/337 (0%) Query: 33 KKPVEFGGQGLDYSYALMMAEELGAITCGGVPMAIGVQTDMATPALARFGSDEVRREFLV 92 KPVEFGG GLDYSYALMMAEELGAITCGGVPMAIGVQTDMATPALARFGSDEVRREFL Sbjct: 10 NKPVEFGGSGLDYSYALMMAEELGAITCGGVPMAIGVQTDMATPALARFGSDEVRREFLA 69 Query: 93 PAIAGDQVACIGVSEPGAGSDVASIKTHARSDGDDYVINGGKMWITNGTQADWICLLANT 152 P+IAGD VACIGVSEPGAGSDVASIKT ARSDGDDYVINGGKMWITNGTQADWICLLANT Sbjct: 70 PSIAGDFVACIGVSEPGAGSDVASIKTAARSDGDDYVINGGKMWITNGTQADWICLLANT 129 Query: 153 SDGQVHRNKSLICVPMKTRGVQVARKLDKLGMRSSDTAQIFFDNVRVPKRNRIGEEGQGF 212 DG VHRNKSLICVPMK +GV VARKLDK+GMRSSDTAQIFFDNVRVPKRNRIGEEG+GF Sbjct: 130 GDGPVHRNKSLICVPMKAKGVTVARKLDKMGMRSSDTAQIFFDNVRVPKRNRIGEEGKGF 189 Query: 213 TYQMIQFQEERLWGAAACLKAHEFIINQTIDYTRGRKAFGGSILDNQVVHFKLAEMQTEV 272 TYQMIQFQEERLWGAAACLKAHE+IIN+TI+YTR RKAFG SILDNQVVHFKLAEMQTEV Sbjct: 190 TYQMIQFQEERLWGAAACLKAHEYIINETIEYTRNRKAFGQSILDNQVVHFKLAEMQTEV 249 Query: 273 ELLRSLIYRAGEALVAGEDVTRLATMAKLKAGRLGRELTDACLQYWGGMGFTNETPVSRA 332 ELLR+LIYRAGEALVAGEDVTRLATMAKLKAGRLGRELTDACLQYWGGMGFTNETPVSRA Sbjct: 250 ELLRALIYRAGEALVAGEDVTRLATMAKLKAGRLGRELTDACLQYWGGMGFTNETPVSRA 309 Query: 333 YRDSRLTSIGGGVDEVMLMVLCKMMGTLPGLKQKGNA 369 YRDSRLTSIGGG DEVMLMVLCKMMGTLPG KGNA Sbjct: 310 YRDSRLTSIGGGADEVMLMVLCKMMGTLPG--SKGNA 344 >ref|YP_533067.1| acyl-CoA dehydrogenase-like protein [Rhodopseudomonas palustris BisB18] gb|ABD88748.1| acyl-CoA dehydrogenase-like [Rhodopseudomonas palustris BisB18] Length = 386 Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust. Identities = 312/385 (81%), Positives = 335/385 (87%), Gaps = 20/385 (5%) Query: 1 MLFTADHDEPRRALQKFIAAEINPHVDEWEKAK--------------------KPVEFGG 40 MLFTADHDEPRR LQKFIA+EINPHVDEWEKA+ KP+++GG Sbjct: 1 MLFTADHDEPRRVLQKFIASEINPHVDEWEKAQIFPAHELFKKLGDLGFLGLNKPIDYGG 60 Query: 41 QGLDYSYALMMAEELGAITCGGVPMAIGVQTDMATPALARFGSDEVRREFLVPAIAGDQV 100 QGLDYSYALMMAEELG I CGGVPMAIGVQTDMATPALARFGSDE+RREFL PAIAGD V Sbjct: 61 QGLDYSYALMMAEELGTIRCGGVPMAIGVQTDMATPALARFGSDELRREFLAPAIAGDMV 120 Query: 101 ACIGVSEPGAGSDVASIKTHARSDGDDYVINGGKMWITNGTQADWICLLANTSDGQVHRN 160 ACIGVSEPGAGSDVA+IKT A SDGDDY+INGGKMWITNGTQADWICLLANT DG HRN Sbjct: 121 ACIGVSEPGAGSDVAAIKTSAVSDGDDYLINGGKMWITNGTQADWICLLANTGDGAKHRN 180 Query: 161 KSLICVPMKTRGVQVARKLDKLGMRSSDTAQIFFDNVRVPKRNRIGEEGQGFTYQMIQFQ 220 KSLI VPMK++GV VARKLDKLGM SSDTAQIFFD VRVPKRNRIGEEG GFTYQM+QFQ Sbjct: 181 KSLIVVPMKSKGVTVARKLDKLGMHSSDTAQIFFDEVRVPKRNRIGEEGMGFTYQMLQFQ 240 Query: 221 EERLWGAAACLKAHEFIINQTIDYTRGRKAFGGSILDNQVVHFKLAEMQTEVELLRSLIY 280 EERLWGAAACLKAH+ I TIDYTR RKAFG SILDNQ VHF+LAE+QTEVE LR+L+Y Sbjct: 241 EERLWGAAACLKAHDLTIADTIDYTRNRKAFGHSILDNQTVHFRLAELQTEVEALRALVY 300 Query: 281 RAGEALVAGEDVTRLATMAKLKAGRLGRELTDACLQYWGGMGFTNETPVSRAYRDSRLTS 340 RA EA++AGEDVT+LATMAKLKAGRLGRE+ DACLQ+WGGMGF NET VSRAYRD+RLTS Sbjct: 301 RAAEAMLAGEDVTKLATMAKLKAGRLGREIPDACLQFWGGMGFMNETAVSRAYRDARLTS 360 Query: 341 IGGGVDEVMLMVLCKMMGTLPGLKQ 365 IGGG DEVML VLCKMMGTLPG+ Q Sbjct: 361 IGGGADEVMLGVLCKMMGTLPGMGQ 385 >ref|YP_781171.1| acyl-CoA dehydrogenase domain-containing protein [Rhodopseudomonas palustris BisA53] gb|ABJ06191.1| acyl-CoA dehydrogenase domain protein [Rhodopseudomonas palustris BisA53] Length = 387 Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust. Identities = 315/386 (81%), Positives = 334/386 (86%), Gaps = 20/386 (5%) Query: 1 MLFTADHDEPRRALQKFIAAEINPHVDEWEKAK--------------------KPVEFGG 40 MLF DHDEPRR LQKFIAAEINPHVDEWEKA+ KPVE+GG Sbjct: 1 MLFNQDHDEPRRILQKFIAAEINPHVDEWEKAQIFPAHELFKKLGELGFLGLNKPVEYGG 60 Query: 41 QGLDYSYALMMAEELGAITCGGVPMAIGVQTDMATPALARFGSDEVRREFLVPAIAGDQV 100 QGLDYSYALMMAEELGAI CGGVPMAIGVQTDMATPALARFGSDE+RREFL P+IAGD V Sbjct: 61 QGLDYSYALMMAEELGAINCGGVPMAIGVQTDMATPALARFGSDELRREFLAPSIAGDFV 120 Query: 101 ACIGVSEPGAGSDVASIKTHARSDGDDYVINGGKMWITNGTQADWICLLANTSDGQVHRN 160 ACIGVSEP AGSDVASIKT+A DGDDYVINGGKMWITNGTQADWICLLANT +G HRN Sbjct: 121 ACIGVSEPSAGSDVASIKTNAVGDGDDYVINGGKMWITNGTQADWICLLANTGEGPKHRN 180 Query: 161 KSLICVPMKTRGVQVARKLDKLGMRSSDTAQIFFDNVRVPKRNRIGEEGQGFTYQMIQFQ 220 KSLICVPMKT+GV +ARKLDKLGM SSDTAQIFFDNVRVPKRNRIGEEG GF YQM+QFQ Sbjct: 181 KSLICVPMKTKGVTIARKLDKLGMHSSDTAQIFFDNVRVPKRNRIGEEGFGFMYQMVQFQ 240 Query: 221 EERLWGAAACLKAHEFIINQTIDYTRGRKAFGGSILDNQVVHFKLAEMQTEVELLRSLIY 280 EERLWGAAACLKAHE I TIDYTR RKAFG S+LDNQVVHF+LAE+QTEVELLRSL+Y Sbjct: 241 EERLWGAAACLKAHERTIQNTIDYTRERKAFGQSLLDNQVVHFRLAELQTEVELLRSLVY 300 Query: 281 RAGEALVAGEDVTRLATMAKLKAGRLGRELTDACLQYWGGMGFTNETPVSRAYRDSRLTS 340 RA EALVAG+DVT+LATMAKL+AGRLGREL DACLQ+WGGMGF NET VSRAYRDSRLTS Sbjct: 301 RAAEALVAGQDVTQLATMAKLRAGRLGRELPDACLQFWGGMGFMNETLVSRAYRDSRLTS 360 Query: 341 IGGGVDEVMLMVLCKMMGTLPGLKQK 366 IGGG DEVML +LCKM GTLP + K Sbjct: 361 IGGGADEVMLGILCKMNGTLPDPRPK 386