BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0043.0005.p (276 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767624.1| transcriptional regulator [Bradyrhizobium japon... 379 e-103 ref|YP_001208686.1| AraC/XylS family transcription factor [Brady... 352 2e-95 ref|YP_001236845.1| AraC family transcriptional regulator [Brady... 351 5e-95 ref|NP_947485.1| AraC family transcriptional regulator [Rhodopse... 298 7e-79 ref|YP_781173.1| AraC family transcriptional regulator [Rhodopse... 298 9e-79 >ref|NP_767624.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC46249.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 266 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 183/259 (70%), Positives = 215/259 (83%), Gaps = 2/259 (0%) Query: 10 QSSSQQSGHRMLITPERVFYAGLLGRPRERCPGAFHVYVAIRDGLHLSTSDGRESHGEIA 69 + + ++S H MLITPERVFYAGLLGRPR+R PG HVYVA++ LHL+ D + E+ Sbjct: 2 EDNGRESDHLMLITPERVFYAGLLGRPRKRTPGCCHVYVAVKGNLHLTIDDVLAT-AELF 60 Query: 70 VTMPNLRHTITSEYRSAICVAIEPESVPDGTLEAVARRLQGPDSHLFANRIRNAYATLAE 129 VT+PN RH+I +YR+AI V +EPES+PDG +EA+A RL GPD ++A +I AYA L + Sbjct: 61 VTLPNQRHSIAGDYRTAISVTLEPESMPDGVIEALAERLTGPDRAVYARKILAAYALLRQ 120 Query: 130 MQHRDAIANAEFDTMCFGDALPQRVLDPRVVRAIGRIGQFSGEPVTAAGCAAEAGLSPSR 189 ++ D I AEFD MCFG+ALP+RVLDPRV+RA+ RIG+FSGEPVTA CAAEAGLS SR Sbjct: 121 RRYGD-ITTAEFDEMCFGEALPRRVLDPRVMRAVARIGRFSGEPVTADTCAAEAGLSASR 179 Query: 190 FLHLFKEETGISFRSFRAWKRARHLLHFANQDINLAHLAQDIGYPDSTHFSHSIRRFYGL 249 FLHLFKEETGISFRSFRAWKRARHLLHFANQD+NLAHLAQDIGYPDSTHFSHSIRRFYGL Sbjct: 180 FLHLFKEETGISFRSFRAWKRARHLLHFANQDLNLAHLAQDIGYPDSTHFSHSIRRFYGL 239 Query: 250 KPRAIFSGSRDLAIYRTGQ 268 KPRAIF GSRDLAIYR+ + Sbjct: 240 KPRAIFVGSRDLAIYRSTE 258 >ref|YP_001208686.1| AraC/XylS family transcription factor [Bradyrhizobium sp. ORS 278] emb|CAL80471.1| putative transcriptional regulator, AraC/XylS family [Bradyrhizobium sp. ORS 278] Length = 278 Score = 352 bits (904), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 177/277 (63%), Positives = 211/277 (76%), Gaps = 3/277 (1%) Query: 1 MDA-IVDAKCQS-SSQQSGHRMLITPERVFYAGLLGRPRERCPGAFHVYVAIRDGLHLST 58 MDA +D K + ++SGH MLITPERVFYAGLLGRPR+RC GAFH+YVA+ L L Sbjct: 1 MDANPMDVKTMDVTRRESGHLMLITPERVFYAGLLGRPRQRCSGAFHIYVALTGSLRLLP 60 Query: 59 SDGRESHGEIAVTMPNLRHTITSEYRSAICVAIEPESVPDGTLEAVARRLQGPDSHLFAN 118 G GE+ V PN +HTI S+YR+ I V +EPESVP GTL+ A ++ ++ +A Sbjct: 61 EGGEARSGELLVVPPNKQHTIESDYRTVIVVTMEPESVPIGTLDRFAAKV-AREAEAYAC 119 Query: 119 RIRNAYATLAEMQHRDAIANAEFDTMCFGDALPQRVLDPRVVRAIGRIGQFSGEPVTAAG 178 RIR AY L + +++A FD +CFG+ LPQR LDPRVV+AIG I +FSGEP TA Sbjct: 120 RIRAAYEELVQRPLSGDVSSAVFDRLCFGEVLPQRTLDPRVVKAIGLINRFSGEPATAES 179 Query: 179 CAAEAGLSPSRFLHLFKEETGISFRSFRAWKRARHLLHFANQDINLAHLAQDIGYPDSTH 238 CAA GLS SRFLHLFKEET ISFRSFRAWKRARHLL++ANQD+NLAHLAQDIGYPDSTH Sbjct: 180 CAAAVGLSTSRFLHLFKEETDISFRSFRAWKRARHLLNYANQDLNLAHLAQDIGYPDSTH 239 Query: 239 FSHSIRRFYGLKPRAIFSGSRDLAIYRTGQAASERAL 275 FSHSIRRFYGLKPRAIFSGSRDLAIYR+G+ + + A+ Sbjct: 240 FSHSIRRFYGLKPRAIFSGSRDLAIYRSGEISQDIAV 276 >ref|YP_001236845.1| AraC family transcriptional regulator [Bradyrhizobium sp. BTAi1] gb|ABQ32939.1| transcriptional regulator, AraC family [Bradyrhizobium sp. BTAi1] Length = 263 Score = 351 bits (901), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 174/259 (67%), Positives = 200/259 (77%), Gaps = 1/259 (0%) Query: 12 SSQQSGHRMLITPERVFYAGLLGRPRERCPGAFHVYVAIRDGLHLSTSDGRESHGEIAVT 71 + + SGH MLITPERVFYAGLLGRPR+RC GAFH+YVA+ L L G E GE+ V Sbjct: 4 TRRDSGHLMLITPERVFYAGLLGRPRQRCSGAFHIYVALTGSLRLLPEGGEERCGELLVV 63 Query: 72 MPNLRHTITSEYRSAICVAIEPESVPDGTLEAVARRLQGPDSHLFANRIRNAYATLAEMQ 131 PN +HTI S+YR+ I V IEPESVP GTL+ A ++ ++ + RIR AY L + Sbjct: 64 PPNKQHTIESDYRTVIVVTIEPESVPIGTLDRFASKVTR-EAEAYGCRIRAAYEELVQRP 122 Query: 132 HRDAIANAEFDTMCFGDALPQRVLDPRVVRAIGRIGQFSGEPVTAAGCAAEAGLSPSRFL 191 + +A FD +CFG+ LPQR LDPRVV+AIG I +FSGEP TA CAA GLS SRFL Sbjct: 123 LSGDVTSAIFDRLCFGEVLPQRSLDPRVVKAIGLISRFSGEPATAESCAAAVGLSTSRFL 182 Query: 192 HLFKEETGISFRSFRAWKRARHLLHFANQDINLAHLAQDIGYPDSTHFSHSIRRFYGLKP 251 HLFKEET ISFRSFRAWKRARHLL++ANQD+NLAHLAQDIGYPDSTHFSHSIRRFYGLKP Sbjct: 183 HLFKEETDISFRSFRAWKRARHLLNYANQDLNLAHLAQDIGYPDSTHFSHSIRRFYGLKP 242 Query: 252 RAIFSGSRDLAIYRTGQAA 270 RAIFSGSRDLAIYR G+AA Sbjct: 243 RAIFSGSRDLAIYRAGEAA 261 >ref|NP_947485.1| AraC family transcriptional regulator [Rhodopseudomonas palustris CGA009] ref|YP_001991421.1| AraC family transcriptional regulator [Rhodopseudomonas palustris TIE-1] emb|CAE27581.1| probable transcriptional regulator, AraC family [Rhodopseudomonas palustris CGA009] gb|ACF00946.1| transcriptional regulator, AraC family [Rhodopseudomonas palustris TIE-1] Length = 274 Score = 298 bits (762), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 146/252 (57%), Positives = 177/252 (70%) Query: 15 QSGHRMLITPERVFYAGLLGRPRERCPGAFHVYVAIRDGLHLSTSDGRESHGEIAVTMPN 74 SGH MLI+PERVFYAGLLGRPR R G + +YV+++ L ++ E G +A P Sbjct: 8 DSGHLMLISPERVFYAGLLGRPRRRTSGGYAIYVSMQGTLRVTIEGRPEQVGAVAFVPPY 67 Query: 75 LRHTITSEYRSAICVAIEPESVPDGTLEAVARRLQGPDSHLFANRIRNAYATLAEMQHRD 134 L H + S+ R I + IEPE+V G + A+ R+ G + A+RIR AY L + RD Sbjct: 68 LPHNVESDSRCIISLVIEPETVLPGPMAALGARIGGAGAMALASRIRQAYGALVAVGRRD 127 Query: 135 AIANAEFDTMCFGDALPQRVLDPRVVRAIGRIGQFSGEPVTAAGCAAEAGLSPSRFLHLF 194 EFD + FG+ LP R +D RV RAI R+ + VTA CA+ A LS SRFLHLF Sbjct: 128 GFTTTEFDNLFFGEPLPARAIDRRVARAIARLNDVGTDTVTAEDCASAANLSQSRFLHLF 187 Query: 195 KEETGISFRSFRAWKRARHLLHFANQDINLAHLAQDIGYPDSTHFSHSIRRFYGLKPRAI 254 K+ETG+SFR+FRAWKRARHLLHF N DINLAHLAQDIGYPDSTHFSHSIRRFYGL+PRAI Sbjct: 188 KDETGVSFRAFRAWKRARHLLHFVNSDINLAHLAQDIGYPDSTHFSHSIRRFYGLQPRAI 247 Query: 255 FSGSRDLAIYRT 266 FSGSRDLAI+R+ Sbjct: 248 FSGSRDLAIWRS 259 >ref|YP_781173.1| AraC family transcriptional regulator [Rhodopseudomonas palustris BisA53] gb|ABJ06193.1| transcriptional regulator, AraC family [Rhodopseudomonas palustris BisA53] Length = 273 Score = 298 bits (762), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 154/263 (58%), Positives = 187/263 (71%), Gaps = 7/263 (2%) Query: 16 SGHRMLITPERVFYAGLLGRPRERCPGAFHVYVAIRDGLHLSTSDGRESH-GEIAVTMPN 74 SGH MLI+PERVFYAGLLGRPR R G F +Y ++ L ++ DG E+ G I + P Sbjct: 9 SGHLMLISPERVFYAGLLGRPRRRQSGGFSIYTSLAGNLRVAI-DGHETRSGVIVIVPPY 67 Query: 75 LRHTITSEYRSAICVAIEPESVPDGTLEAVARRLQGPDS--HLFANRIRNAYATLAEMQH 132 L H++ S++ + + IEPE++ G L+A+A Q D A RIR AY LA + Sbjct: 68 LAHSVESDHLTVTSLVIEPETIAPGALDALA---QADDEVHQRLALRIRAAYDDLASSRR 124 Query: 133 RDAIANAEFDTMCFGDALPQRVLDPRVVRAIGRIGQFSGEPVTAAGCAAEAGLSPSRFLH 192 RD AEFD + F LP+R +DPR+ RAI +G F+G VTAA CAA A LS SRFLH Sbjct: 125 RDGFTTAEFDAIFFAKPLPRRDIDPRIARAIACLGDFTGNAVTAADCAALANLSQSRFLH 184 Query: 193 LFKEETGISFRSFRAWKRARHLLHFANQDINLAHLAQDIGYPDSTHFSHSIRRFYGLKPR 252 LFK+ETG++FR+FRAWKRARH+LHF N+DINLAHLAQDIGYPDSTHFSHSIRRFYGLKPR Sbjct: 185 LFKDETGVAFRAFRAWKRARHMLHFVNEDINLAHLAQDIGYPDSTHFSHSIRRFYGLKPR 244 Query: 253 AIFSGSRDLAIYRTGQAASERAL 275 AIFSGSRDLAIYR S+ +L Sbjct: 245 AIFSGSRDLAIYRGDPQVSQGSL 267