BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0043.0004.p (407 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_486872.1| twin-arginine translocation pathway signal [Rho... 646 0.0 ref|NP_945462.1| branched chain amino-acid ABC transporter subst... 544 e-152 ref|YP_001989148.1| branched-chain amino acid ABC transporter su... 544 e-152 ref|YP_004107975.1| extracellular ligand-binding receptor [Rhodo... 409 e-112 ref|YP_001993217.1| branched-chain amino acid ABC transporter pe... 409 e-112 >ref|YP_486872.1| twin-arginine translocation pathway signal [Rhodopseudomonas palustris HaA2] gb|ABD07961.1| Twin-arginine translocation pathway signal [Rhodopseudomonas palustris HaA2] Length = 407 Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust. Identities = 297/404 (73%), Positives = 349/404 (86%) Query: 1 MISINRRAWLTRAAGVGLAAVAGVRASLAEDTPGVTATEIRIGSTTSLSGPVSALGVQAR 60 M S++RR+ + R+A GLAA+ R + A+D PGVTATE++IG TTSLSGPVSALG AR Sbjct: 1 MTSLSRRSLMLRSAAAGLAALTSARNARADDWPGVTATELKIGCTTSLSGPVSALGTIAR 60 Query: 61 CQEAYFKMLNEQGGIAGRQIKYIYYDDAFNPAKTVEQVRRLIESDNVAFLFNMLGTAPNS 120 QEAYF+MLN+QGGIAGR+I +I YDDAFNP+KTVEQ RRLIESDNVAFLF+MLGTAPNS Sbjct: 61 SQEAYFRMLNDQGGIAGRKINFIMYDDAFNPSKTVEQTRRLIESDNVAFLFSMLGTAPNS 120 Query: 121 SVVKYINAAKVPHLFLSVNGDKWGDYKTYPWTMGFAPSARTEAQVFVKYALSQNKNAKFA 180 +VVKYINA KVPHLFLSVNGDKWGDYKTYPWTMGFAPS+RTEAQVF KYALSQ +AKFA Sbjct: 121 AVVKYINAQKVPHLFLSVNGDKWGDYKTYPWTMGFAPSSRTEAQVFAKYALSQKPDAKFA 180 Query: 181 VLYQNDDLGKDFVAGAKDVLGERFATAAVVASHEVTDPTIDSQIVALRGANPDVLISGTT 240 +LYQNDDLGKDFVAG +DVLG+R+ T S+EVT+PTIDSQIV LR N DVLISG T Sbjct: 181 LLYQNDDLGKDFVAGLRDVLGDRYDTLVKALSYEVTEPTIDSQIVTLRATNADVLISGVT 240 Query: 241 AKFCAQSIRKIYELGWKPMHFIASGAASISSTIAPVGLDKSQGTISSAYVKDVADPAWAN 300 +KF AQ+IRK+YELGWKPMHF+ SGAAS++STI PVG ++++G I+S Y KD ADPAWA+ Sbjct: 241 SKFAAQAIRKVYELGWKPMHFVTSGAASVASTIIPVGAERAEGLITSTYTKDPADPAWAD 300 Query: 301 DPGVKDFLAFMEKYFPDGNPKEGYNLYAYTVAQVLKIVLEQCKGNFSRDNIMAQANNLKD 360 DPG+KD++AFM KYFP GN KE N Y YT A VL+++LEQCKGNFSR++IMAQANNLK+ Sbjct: 301 DPGIKDYMAFMAKYFPTGNAKESLNAYGYTAASVLRVLLEQCKGNFSRESIMAQANNLKN 360 Query: 361 IEVPTLLPGIRVNTSPTNHHPLQQLQLQRIEGPGWLRFGEVIQG 404 +EVPTLLPG+RVNTSPTNHHPL+Q+QLQR EG G+ RFG VI+G Sbjct: 361 VEVPTLLPGVRVNTSPTNHHPLRQMQLQRFEGQGYKRFGAVIEG 404 >ref|NP_945462.1| branched chain amino-acid ABC transporter substrate-binding protein [Rhodopseudomonas palustris CGA009] emb|CAE25550.1| possible branched-chain amino acid transport system substrate-binding protein [Rhodopseudomonas palustris CGA009] Length = 402 Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust. Identities = 259/402 (64%), Positives = 315/402 (78%), Gaps = 2/402 (0%) Query: 1 MISINRRAWLTRAAGVGLAAVAGVRASLAEDTPGVTATEIRIGSTTSLSGPVSALGVQAR 60 M ++RR +L A L VA + A DT G+T T IRIGST+ SGPVSA GVQAR Sbjct: 1 MTVMDRRCFLLGTATTML--VATSMKAQAADTTGITPTSIRIGSTSPQSGPVSAYGVQAR 58 Query: 61 CQEAYFKMLNEQGGIAGRQIKYIYYDDAFNPAKTVEQVRRLIESDNVAFLFNMLGTAPNS 120 CQ AYFKM+N++GGIAGR+I +IYYDDAFNPAKTVEQ R+L+ESD VA LF+ LGTA NS Sbjct: 59 CQAAYFKMINDRGGIAGRKIDFIYYDDAFNPAKTVEQTRKLVESDEVALLFSNLGTATNS 118 Query: 121 SVVKYINAAKVPHLFLSVNGDKWGDYKTYPWTMGFAPSARTEAQVFVKYALSQNKNAKFA 180 ++VKY NA K+PHLFLSVNGDKW DYK +PW++GFAPSARTEA +FVK+ L++ +AKFA Sbjct: 119 AIVKYANAKKIPHLFLSVNGDKWSDYKAHPWSIGFAPSARTEAAIFVKHMLAEKPDAKFA 178 Query: 181 VLYQNDDLGKDFVAGAKDVLGERFATAAVVASHEVTDPTIDSQIVALRGANPDVLISGTT 240 VLYQNDD GKDFV GAKDVLGER + V SHE +DPTIDSQI+ LR A PD LISGTT Sbjct: 179 VLYQNDDFGKDFVLGAKDVLGERESRQLVTISHETSDPTIDSQILQLRAAAPDALISGTT 238 Query: 241 AKFCAQSIRKIYELGWKPMHFIASGAASISSTIAPVGLDKSQGTISSAYVKDVADPAWAN 300 AKF AQ+IRK+ E W+ H+I G++S + TI P G + + G ISSAY+KDVADPAW + Sbjct: 239 AKFTAQAIRKVAETRWQVRHYITGGSSSYAGTIGPAGPENAVGVISSAYLKDVADPAWKD 298 Query: 301 DPGVKDFLAFMEKYFPDGNPKEGYNLYAYTVAQVLKIVLEQCKGNFSRDNIMAQANNLKD 360 D G+KDFLAFM+ YFP+GN + YNLYAYTVA L VL QC ++R+NIMAQA NLKD Sbjct: 299 DQGIKDFLAFMQSYFPEGNKDDFYNLYAYTVASALVKVLTQCGDGWTRENIMAQATNLKD 358 Query: 361 IEVPTLLPGIRVNTSPTNHHPLQQLQLQRIEGPGWLRFGEVI 402 +E+PTLLPGIRVNTSPT++ PL Q+QLQ+ +G W+RFG+V+ Sbjct: 359 VELPTLLPGIRVNTSPTDYRPLTQVQLQKWDGKAWVRFGDVL 400 >ref|YP_001989148.1| branched-chain amino acid ABC transporter substrate-binding protein [Rhodopseudomonas palustris TIE-1] gb|ACE98672.1| putative ABC transporter, substrate-binding protein; putative branched-chain amino acid transporter [Rhodopseudomonas palustris TIE-1] Length = 402 Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust. Identities = 258/402 (64%), Positives = 316/402 (78%), Gaps = 2/402 (0%) Query: 1 MISINRRAWLTRAAGVGLAAVAGVRASLAEDTPGVTATEIRIGSTTSLSGPVSALGVQAR 60 M +++RR +L A L VA + A DT G+T T IRIGST+ SGPVSA GVQAR Sbjct: 1 MTAMDRRCFLLGTATTML--VATSMKAQAADTTGITPTSIRIGSTSPQSGPVSAYGVQAR 58 Query: 61 CQEAYFKMLNEQGGIAGRQIKYIYYDDAFNPAKTVEQVRRLIESDNVAFLFNMLGTAPNS 120 CQ AYFKM+N++GGIAGR+I +IYYDDAFNPAKTVEQ R+L+ESD VA LF+ LGTA NS Sbjct: 59 CQAAYFKMINDRGGIAGRKIDFIYYDDAFNPAKTVEQTRKLVESDEVALLFSNLGTATNS 118 Query: 121 SVVKYINAAKVPHLFLSVNGDKWGDYKTYPWTMGFAPSARTEAQVFVKYALSQNKNAKFA 180 ++VKY NA K+PHLFLSVNGDKW DYK +PW++GFAPSARTEA +FVK+ L++ +AKFA Sbjct: 119 AIVKYANAKKIPHLFLSVNGDKWSDYKAHPWSIGFAPSARTEAAIFVKHMLAEKPDAKFA 178 Query: 181 VLYQNDDLGKDFVAGAKDVLGERFATAAVVASHEVTDPTIDSQIVALRGANPDVLISGTT 240 VLYQNDD GKDFV GAKDVLG+R + V SHE +DPTIDSQI+ LR A PD LISGTT Sbjct: 179 VLYQNDDFGKDFVLGAKDVLGDRESRQLVTISHETSDPTIDSQILQLRAAAPDALISGTT 238 Query: 241 AKFCAQSIRKIYELGWKPMHFIASGAASISSTIAPVGLDKSQGTISSAYVKDVADPAWAN 300 AKF AQ+IRK+ E W+ H+I G++S + TI P G + + G ISSAY+KDVADPAW + Sbjct: 239 AKFTAQAIRKVAETRWQVRHYITGGSSSYAGTIGPAGPENAVGVISSAYLKDVADPAWKD 298 Query: 301 DPGVKDFLAFMEKYFPDGNPKEGYNLYAYTVAQVLKIVLEQCKGNFSRDNIMAQANNLKD 360 D G+KDFLAFM+ YFP+GN + YNLYAYTVA L VL QC ++R+NIMAQA NLKD Sbjct: 299 DQGIKDFLAFMQSYFPEGNKDDFYNLYAYTVASALVKVLTQCGDGWTRENIMAQATNLKD 358 Query: 361 IEVPTLLPGIRVNTSPTNHHPLQQLQLQRIEGPGWLRFGEVI 402 +E+PTLLPGIRVNTSPT++ PL Q+QLQ+ +G W+RFG+V+ Sbjct: 359 VELPTLLPGIRVNTSPTDYRPLTQVQLQKWDGKAWVRFGDVL 400 >ref|YP_004107975.1| extracellular ligand-binding receptor [Rhodopseudomonas palustris DX-1] gb|ADU43242.1| Extracellular ligand-binding receptor [Rhodopseudomonas palustris DX-1] Length = 409 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 197/388 (50%), Positives = 270/388 (69%), Gaps = 2/388 (0%) Query: 16 VGLAAVAGVRASLAEDTPGVTATEIRIGSTTSLSGPVSALGVQARCQEAYFKMLNEQGGI 75 V AA +G A D PGV+ TEI+IG+ SGP SA GV R + AYFKM+N++GGI Sbjct: 17 VSFAASSGALAQKKYD-PGVSDTEIKIGNIMPYSGPASAYGVIGRTEAAYFKMINDKGGI 75 Query: 76 AGRQIKYIYYDDAFNPAKTVEQVRRLIESDNVAFLFNMLGTAPNSSVVKYINAAKVPHLF 135 GR+I +I YDDA++ KTVEQ R+L+ESD V +FN LGT PNS++ KY+N+ KVP LF Sbjct: 76 NGRKINFISYDDAYSSPKTVEQARKLVESDEVLLIFNSLGTPPNSAIHKYMNSKKVPQLF 135 Query: 136 LSVNGDKWGDYKTYPWTMGFAPSARTEAQVFVKYALSQNKNAKFAVLYQNDDLGKDFVAG 195 ++ KW D K +PWTMG+ P+ ++E Q++ KY L + NAK AVLYQNDD GKD++ G Sbjct: 136 VATGATKWNDPKNFPWTMGWQPNYQSETQIYAKYILKEMPNAKIAVLYQNDDYGKDYLKG 195 Query: 196 AKDVLGERFATAAVV-ASHEVTDPTIDSQIVALRGANPDVLISGTTAKFCAQSIRKIYEL 254 +D LG + A+ V+ ++E++ PTIDS IV L+ DV I+ TT KF AQ+I+K+ E+ Sbjct: 196 LEDGLGAKGASMIVIKEAYEISTPTIDSHIVKLKSIGADVFINITTPKFAAQAIKKMGEI 255 Query: 255 GWKPMHFIASGAASISSTIAPVGLDKSQGTISSAYVKDVADPAWANDPGVKDFLAFMEKY 314 GWKP HF+ + +AS+ S I P G + +QG IS+AY+KDV+D W +D G+K+FLAFM+K Sbjct: 256 GWKPTHFLNNVSASVGSVIKPAGYENAQGVISAAYLKDVSDEQWKDDAGMKEFLAFMDKE 315 Query: 315 FPDGNPKEGYNLYAYTVAQVLKIVLEQCKGNFSRDNIMAQANNLKDIEVPTLLPGIRVNT 374 FP+GN +G + Y VAQ L VL++C N +R+N+M QA +LKD LLPGI++NT Sbjct: 316 FPEGNKLDGGTVVGYGVAQTLVEVLKKCGDNLTRENVMKQAASLKDYRTEVLLPGIKINT 375 Query: 375 SPTNHHPLQQLQLQRIEGPGWLRFGEVI 402 S T+ P+ QLQL R +G W FG+VI Sbjct: 376 SATDFAPVSQLQLMRFKGEKWELFGDVI 403 >ref|YP_001993217.1| branched-chain amino acid ABC transporter periplasmic protein [Rhodopseudomonas palustris TIE-1] gb|ACF02742.1| Extracellular ligand-binding receptor [Rhodopseudomonas palustris TIE-1] Length = 409 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 198/386 (51%), Positives = 266/386 (68%), Gaps = 2/386 (0%) Query: 18 LAAVAGVRASLAEDTPGVTATEIRIGSTTSLSGPVSALGVQARCQEAYFKMLNEQGGIAG 77 AA G A D PG + TEIRIG+ SGP SA GV R + AYFKM+N++GGI G Sbjct: 19 FAASNGALAQKKYD-PGASDTEIRIGNIMPYSGPASAYGVIGRTEAAYFKMINDKGGING 77 Query: 78 RQIKYIYYDDAFNPAKTVEQVRRLIESDNVAFLFNMLGTAPNSSVVKYINAAKVPHLFLS 137 R+I +I YDDA++P KTVEQ R+L+ESD V +FN LGT PNS++ KY+N+ KVP LF++ Sbjct: 78 RKINFISYDDAYSPPKTVEQARKLVESDEVLLIFNSLGTPPNSAIHKYMNSKKVPQLFVA 137 Query: 138 VNGDKWGDYKTYPWTMGFAPSARTEAQVFVKYALSQNKNAKFAVLYQNDDLGKDFVAGAK 197 KW D K YPWTMG+ P+ ++E Q++ KY L + NAK AVLYQNDD GKD++ G + Sbjct: 138 TGASKWNDPKNYPWTMGWQPNYQSETQIYAKYILKEMPNAKIAVLYQNDDYGKDYLKGFE 197 Query: 198 DVLGERFATAAVVA-SHEVTDPTIDSQIVALRGANPDVLISGTTAKFCAQSIRKIYELGW 256 D LG + + V+ S+EV++PTID+ IV L+ DV I+ TT KF AQ+I+K+ E+GW Sbjct: 198 DGLGAKGQSMIVMKESYEVSEPTIDNHIVKLKSTGADVFINITTPKFAAQAIKKLAEVGW 257 Query: 257 KPMHFIASGAASISSTIAPVGLDKSQGTISSAYVKDVADPAWANDPGVKDFLAFMEKYFP 316 KP HF+ + +AS+ S I P G + +QG IS+AY+KDV+D W +D G+K FLAFM+K FP Sbjct: 258 KPTHFLNNVSASVGSVIKPAGYENAQGVISAAYLKDVSDDQWKDDAGMKQFLAFMDKEFP 317 Query: 317 DGNPKEGYNLYAYTVAQVLKIVLEQCKGNFSRDNIMAQANNLKDIEVPTLLPGIRVNTSP 376 +GN +G + Y VAQ L VL+ C N +R+N+M QA +LKD LLPGI++NTS Sbjct: 318 EGNKLDGGTIVGYGVAQTLVEVLKACGDNLTRENVMKQAASLKDYRTEVLLPGIKINTSA 377 Query: 377 TNHHPLQQLQLQRIEGPGWLRFGEVI 402 T+ P+ QLQL R +G W FG+VI Sbjct: 378 TDFAPVSQLQLMRFKGEKWELFGDVI 403