BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0043.0002.p (532 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001236848.1| putative fatty-acid--CoA ligase [Bradyrhizob... 964 0.0 ref|YP_533063.1| AMP-dependent synthetase and ligase [Rhodopseud... 915 0.0 ref|ZP_08630845.1| long-chain-fatty-acid--CoA ligase [Bradyrhizo... 901 0.0 ref|YP_486868.1| AMP-dependent synthetase and ligase [Rhodopseud... 899 0.0 ref|NP_947487.1| putative fatty-acid--CoA ligase [Rhodopseudomon... 899 0.0 >ref|YP_001236848.1| putative fatty-acid--CoA ligase [Bradyrhizobium sp. BTAi1] gb|ABQ32942.1| putative fatty-acid--CoA ligase [Bradyrhizobium sp. BTAi1] Length = 533 Score = 964 bits (2491), Expect = 0.0, Method: Compositional matrix adjust. Identities = 460/532 (86%), Positives = 493/532 (92%), Gaps = 1/532 (0%) Query: 1 MHNLAAPGGVTGPGRIGRVAIGDLLKRAARRFPDRIALTDGNRQVTFTELERDANRFANH 60 M NL A GGV GPGRIGRVAIGDLLKRAARRFP+R+A+TDG+RQVTFTELERDANRFAN+ Sbjct: 2 MTNLDATGGVAGPGRIGRVAIGDLLKRAARRFPERVAITDGSRQVTFTELERDANRFANY 61 Query: 61 LVQRGLKPGEKISTICNNSVEFVKALFGIHRAGLVWVPINTMLGPSDMDYILGHAEVRFA 120 LV +GLKPGEKI+T+CNNS+EFVKALFGIHRAGLVWVPINTMLGP+DMDYILGHAEVRFA Sbjct: 62 LVAKGLKPGEKIATVCNNSIEFVKALFGIHRAGLVWVPINTMLGPADMDYILGHAEVRFA 121 Query: 121 VIDDALHAQADRRAALEARGMEMIAIDLTGNAGKTGLQEFNGLLEGQSDIEPDIEINDRD 180 +IDD LHAQ +RRAALE RG E+IAIDLTG A L FN L++GQS+IEPDI INDRD Sbjct: 122 IIDDNLHAQPERRAALEKRGAELIAIDLTGTAKAAELASFNELIQGQSEIEPDIAINDRD 181 Query: 181 LAMIIYTSGTTSRPKGAMHCHLAVVMAVMSNCIEMQLSRDDGITGQFPLFHCAGHVLLLS 240 LAMIIYTSGTTSRPKGAMHCHLAVVMAVMSNCIEMQLSRDDGITGQFPLFHCAGHVLLLS Sbjct: 182 LAMIIYTSGTTSRPKGAMHCHLAVVMAVMSNCIEMQLSRDDGITGQFPLFHCAGHVLLLS 241 Query: 241 YLSVGGRMALMRGFDPVACMEAIVRDKLTVFVGLSLMYQAILDHPRRRDYDLSGLRCCIY 300 YLSVGGRMALMRGFDPVACMEAIVRD+LTVFVGL LMYQAILDHPRR+++DLS LR C+Y Sbjct: 242 YLSVGGRMALMRGFDPVACMEAIVRDRLTVFVGLPLMYQAILDHPRRKEFDLSYLRTCLY 301 Query: 301 TMAPMGKPLLERAIADLCPNFVLSSGQTEMYPATTMSRPEVQLDRFGNYWGESLIVNETA 360 TMAPMG+PLLERAI +LCPNFVL+SGQTEMYPATTMSRPEVQL+RFGNYWGESL VNETA Sbjct: 302 TMAPMGRPLLERAIKELCPNFVLTSGQTEMYPATTMSRPEVQLNRFGNYWGESLFVNETA 361 Query: 361 IMDDNGNLLPRGEIGELVHRGPNVMMGYYKDPRSTEEARKFGWHHTGDLALIDGNGEVLF 420 IMDD GNLLP GEIGELVHRGPNVMMGYYKDP+STE+ARKFGWHHTGDLA+I+ NGEVLF Sbjct: 362 IMDDAGNLLPPGEIGELVHRGPNVMMGYYKDPQSTEDARKFGWHHTGDLAVIE-NGEVLF 420 Query: 421 LDRKKDMIKSGGENVASVKIEETLLAHPAVQNAAVVGLPHPQWGEAVSAFVKLKPGAVAD 480 LDRKKDMIKSGGENVASVKIEETLLAHPAVQNAAVVGLPHPQWGEAVSAFVKLKPGA A Sbjct: 421 LDRKKDMIKSGGENVASVKIEETLLAHPAVQNAAVVGLPHPQWGEAVSAFVKLKPGAQAS 480 Query: 481 EAGIEAHCRKHLGGFQVPKLVRILEEMPMTATGKLRKVELRQQYSGHFVERA 532 E + HCRK LGGFQVPKLVR+L EMPMTATGKLRKVELRQ Y HF ++ Sbjct: 481 ETELLEHCRKSLGGFQVPKLVRVLAEMPMTATGKLRKVELRQAYGDHFAAKS 532 >ref|YP_533063.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris BisB18] gb|ABD88744.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris BisB18] Length = 533 Score = 915 bits (2364), Expect = 0.0, Method: Compositional matrix adjust. Identities = 441/533 (82%), Positives = 481/533 (90%), Gaps = 1/533 (0%) Query: 1 MHNLAAPGGVTGPGRIGRVAIGDLLKRAARRFPDRIALTDGNRQVTFTELERDANRFANH 60 M +LAA GGV+GPGRIGRVAIGDLLK+AA RF DR+AL+DG R+V+F ELERDANRFAN+ Sbjct: 1 MSDLAATGGVSGPGRIGRVAIGDLLKKAAVRFADRVALSDGERRVSFAELERDANRFANY 60 Query: 61 LVQRGLKPGEKISTICNNSVEFVKALFGIHRAGLVWVPINTMLGPSDMDYILGHAEVRFA 120 LV RGL+PG KISTICNNSVEFVKALFGIHRAGLVWVPINTMLGP+DMDYIL HAEV A Sbjct: 61 LVSRGLRPGSKISTICNNSVEFVKALFGIHRAGLVWVPINTMLGPADMDYILDHAEVNLA 120 Query: 121 VIDDALHAQADRRAALEARGMEMIAIDLTGNAGKTGLQEFNGLLEGQSDIEPDIEINDRD 180 +IDD LHAQ +RRAALE RG++++ IDLTG A GL F L+EGQSD EP+I+ +DRD Sbjct: 121 LIDDNLHAQPERRAALEKRGIDLVTIDLTGKAKAAGLASFGELIEGQSDAEPEIDFDDRD 180 Query: 181 LAMIIYTSGTTSRPKGAMHCHLAVVMAVMSNCIEMQLSRDDGITGQFPLFHCAGHVLLLS 240 LAMIIYTSGTTSRPKGAMHCHLAVVMAVMSNCIEM+L RDDGITGQFP+FHCAGHVLLLS Sbjct: 181 LAMIIYTSGTTSRPKGAMHCHLAVVMAVMSNCIEMKLGRDDGITGQFPIFHCAGHVLLLS 240 Query: 241 YLSVGGRMALMRGFDPVACMEAIVRDKLTVFVGLSLMYQAILDHPRRRDYDLSGLRCCIY 300 YL+VGGRMALMRGFDP+ CMEAI RDKLTVFVGLSLMYQAILDHPRR DYDLS LR CIY Sbjct: 241 YLAVGGRMALMRGFDPMVCMEAIQRDKLTVFVGLSLMYQAILDHPRRNDYDLSSLRMCIY 300 Query: 301 TMAPMGKPLLERAIADLCPNFVLSSGQTEMYPATTMSRPEVQLDRFGNYWGESLIVNETA 360 TMAPMG+PLLER I +LCPNF L+SGQTEMYPATTMS+P+ QL+RFGNYWGESLIVNETA Sbjct: 301 TMAPMGRPLLERGIRELCPNFALTSGQTEMYPATTMSQPDRQLERFGNYWGESLIVNETA 360 Query: 361 IMDDNGNLLPRGEIGELVHRGPNVMMGYYKDPRSTEEARKFGWHHTGDLALIDGNGEVLF 420 IMD+ G LLPRGEIGELVHRGPNVMMGYYKDP +T ARKFGWHHTGDLALID NGEVLF Sbjct: 361 IMDEEGRLLPRGEIGELVHRGPNVMMGYYKDPEATAAARKFGWHHTGDLALIDANGEVLF 420 Query: 421 LDRKKDMIKSGGENVASVKIEETLLAHPAVQNAAVVGLPHPQWGEAVSAFVKLKPGAVAD 480 LDRKKDMIKSGGENVASV+IEETLLAHPAVQNAAVVGLPHPQWGEAVSAFVKLKPGA A Sbjct: 421 LDRKKDMIKSGGENVASVRIEETLLAHPAVQNAAVVGLPHPQWGEAVSAFVKLKPGAAAS 480 Query: 481 EAGIEAHCRKHLGGFQVPKLVRILEEMPMTATGKLRKVELRQQYSGHF-VERA 532 EA I HC+ HLGGFQVPKL+RI+E+MPMTATGKLRKVELR +++ F ERA Sbjct: 481 EAEIAEHCKAHLGGFQVPKLIRIVEDMPMTATGKLRKVELRNRFADFFATERA 533 >ref|ZP_08630845.1| long-chain-fatty-acid--CoA ligase [Bradyrhizobiaceae bacterium SG-6C] gb|EGP06377.1| long-chain-fatty-acid--CoA ligase [Bradyrhizobiaceae bacterium SG-6C] Length = 534 Score = 901 bits (2329), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/528 (80%), Positives = 476/528 (90%) Query: 1 MHNLAAPGGVTGPGRIGRVAIGDLLKRAARRFPDRIALTDGNRQVTFTELERDANRFANH 60 M +L A GGV GPGRIGRVA+GD+L+RAA+RFPDRIALTDG RQVTFTE++ DANRFAN+ Sbjct: 1 MSDLTATGGVPGPGRIGRVAVGDILRRAAKRFPDRIALTDGARQVTFTEVDHDANRFANY 60 Query: 61 LVQRGLKPGEKISTICNNSVEFVKALFGIHRAGLVWVPINTMLGPSDMDYILGHAEVRFA 120 L+ RGLKPGEKISTICNNSVEFVKALFGIHRAGLVWVPINTMLGPSDMDYILGHAEVRFA Sbjct: 61 LLARGLKPGEKISTICNNSVEFVKALFGIHRAGLVWVPINTMLGPSDMDYILGHAEVRFA 120 Query: 121 VIDDALHAQADRRAALEARGMEMIAIDLTGNAGKTGLQEFNGLLEGQSDIEPDIEINDRD 180 +IDD LHA+ +RRAALE RG+++IA+DLTG A + GL+ FN L++GQSD+EP+I +DRD Sbjct: 121 LIDDNLHARPERRAALEKRGVDLIAVDLTGKAKEQGLESFNDLIKGQSDVEPEIAFDDRD 180 Query: 181 LAMIIYTSGTTSRPKGAMHCHLAVVMAVMSNCIEMQLSRDDGITGQFPLFHCAGHVLLLS 240 LAMIIYTSGTTSRPKGAMHCHLAVVMA MSN IEM L R+DGI+GQFPLFHCA HVLLL+ Sbjct: 181 LAMIIYTSGTTSRPKGAMHCHLAVVMAAMSNAIEMHLDRNDGISGQFPLFHCAAHVLLLT 240 Query: 241 YLSVGGRMALMRGFDPVACMEAIVRDKLTVFVGLSLMYQAILDHPRRRDYDLSGLRCCIY 300 YLSVGG+M++MRGFDPVACMEAI RD+LT+F+GL MYQAILDHPRR+++DLS LR C+Y Sbjct: 241 YLSVGGKMSIMRGFDPVACMEAIQRDRLTIFIGLPAMYQAILDHPRRKEFDLSTLRTCVY 300 Query: 301 TMAPMGKPLLERAIADLCPNFVLSSGQTEMYPATTMSRPEVQLDRFGNYWGESLIVNETA 360 TMAPM +PLLER IA+LCP FV SGQTEMYPATTMS+P+ QL RFGNYWGES+IVNETA Sbjct: 301 TMAPMPRPLLERCIAELCPTFVQPSGQTEMYPATTMSQPDRQLARFGNYWGESMIVNETA 360 Query: 361 IMDDNGNLLPRGEIGELVHRGPNVMMGYYKDPRSTEEARKFGWHHTGDLALIDGNGEVLF 420 IMDD G+LLP G++GE+VHRGPNVM+GYYKDP +T ARKFGWHHTGDLALID +GEVLF Sbjct: 361 IMDDEGHLLPPGQVGEIVHRGPNVMLGYYKDPEATAAARKFGWHHTGDLALIDEHGEVLF 420 Query: 421 LDRKKDMIKSGGENVASVKIEETLLAHPAVQNAAVVGLPHPQWGEAVSAFVKLKPGAVAD 480 +DRKKDMIKSGGENVASVKIEETLLAHP V +AAVVGLPHPQWGEAVSAFVKLKP A A Sbjct: 421 IDRKKDMIKSGGENVASVKIEETLLAHPEVVSAAVVGLPHPQWGEAVSAFVKLKPNAQAH 480 Query: 481 EAGIEAHCRKHLGGFQVPKLVRILEEMPMTATGKLRKVELRQQYSGHF 528 E I HCRK LGGFQ+PKLVRIL+EMPMTATGKLRKVELRQQ+ HF Sbjct: 481 ETDIIEHCRKTLGGFQIPKLVRILDEMPMTATGKLRKVELRQQFVDHF 528 >ref|YP_486868.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris HaA2] gb|ABD07957.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris HaA2] Length = 534 Score = 899 bits (2324), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/528 (80%), Positives = 475/528 (89%) Query: 1 MHNLAAPGGVTGPGRIGRVAIGDLLKRAARRFPDRIALTDGNRQVTFTELERDANRFANH 60 M NL A GGV GPGRIGRVAIGD+L+++A RFP RIALT+G RQV++TELERDANRFAN+ Sbjct: 1 MINLEATGGVPGPGRIGRVAIGDILRKSALRFPARIALTEGARQVSYTELERDANRFANY 60 Query: 61 LVQRGLKPGEKISTICNNSVEFVKALFGIHRAGLVWVPINTMLGPSDMDYILGHAEVRFA 120 LV RGLKPG+KISTICNNSVEFVKALFGIHRAGLVWVPINTMLGP DM YIL HA V+FA Sbjct: 61 LVSRGLKPGDKISTICNNSVEFVKALFGIHRAGLVWVPINTMLGPDDMSYILDHAGVKFA 120 Query: 121 VIDDALHAQADRRAALEARGMEMIAIDLTGNAGKTGLQEFNGLLEGQSDIEPDIEINDRD 180 +IDD LH Q +RRAALE+RG+ ++A+DLTG A + GL+ FN L++G S+IEP++ +DRD Sbjct: 121 LIDDNLHGQPERRAALESRGIALVAVDLTGKAKEAGLRSFNELIDGHSEIEPEVAFDDRD 180 Query: 181 LAMIIYTSGTTSRPKGAMHCHLAVVMAVMSNCIEMQLSRDDGITGQFPLFHCAGHVLLLS 240 LAMIIYTSGTTSRPKGAMHCHLAV MAVMSN IE+QL+R+DGITGQFPLFHCA HVLLLS Sbjct: 181 LAMIIYTSGTTSRPKGAMHCHLAVTMAVMSNAIELQLTRNDGITGQFPLFHCAAHVLLLS 240 Query: 241 YLSVGGRMALMRGFDPVACMEAIVRDKLTVFVGLSLMYQAILDHPRRRDYDLSGLRCCIY 300 YL+VGG+MALMRGFDPVAC+EAI RDKLTVF+GL LMYQ ILDHPRR+++DLS LRCCIY Sbjct: 241 YLAVGGKMALMRGFDPVACLEAIQRDKLTVFIGLPLMYQVILDHPRRKEFDLSTLRCCIY 300 Query: 301 TMAPMGKPLLERAIADLCPNFVLSSGQTEMYPATTMSRPEVQLDRFGNYWGESLIVNETA 360 TMAPM +PLLERAIA+LCPNFV SGQTEMYPATTMS+P+ QL RFGNYWGES +VNETA Sbjct: 301 TMAPMPRPLLERAIAELCPNFVQPSGQTEMYPATTMSQPDRQLARFGNYWGESCMVNETA 360 Query: 361 IMDDNGNLLPRGEIGELVHRGPNVMMGYYKDPRSTEEARKFGWHHTGDLALIDGNGEVLF 420 IMDD GNLLP GE+GELVHRGPNVM+GYYKDP +TE ARKFGWHHTGDLALID +GEVLF Sbjct: 361 IMDDAGNLLPPGEVGELVHRGPNVMLGYYKDPEATEAARKFGWHHTGDLALIDTHGEVLF 420 Query: 421 LDRKKDMIKSGGENVASVKIEETLLAHPAVQNAAVVGLPHPQWGEAVSAFVKLKPGAVAD 480 +DRKKDMIKSGGENVASVKIEETLLAHPAV NAAVVGLPHPQWGEAVS FVKLKPGA A Sbjct: 421 VDRKKDMIKSGGENVASVKIEETLLAHPAVMNAAVVGLPHPQWGEAVSGFVKLKPGAQAT 480 Query: 481 EAGIEAHCRKHLGGFQVPKLVRILEEMPMTATGKLRKVELRQQYSGHF 528 E I HCRK LGGFQVPKLVRI++EMPMTATGKLRKVELR Q++ +F Sbjct: 481 ETEIIEHCRKTLGGFQVPKLVRIVDEMPMTATGKLRKVELRNQFTDYF 528 >ref|NP_947487.1| putative fatty-acid--CoA ligase [Rhodopseudomonas palustris CGA009] emb|CAE27583.1| putative fatty-acid--CoA ligase [Rhodopseudomonas palustris CGA009] Length = 534 Score = 899 bits (2323), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/529 (80%), Positives = 472/529 (89%) Query: 1 MHNLAAPGGVTGPGRIGRVAIGDLLKRAARRFPDRIALTDGNRQVTFTELERDANRFANH 60 M +L A GGV GPGRIGRVAIGD+L+++ARRFPDR+ALTDG R VT+TELERDANRFAN Sbjct: 1 MTSLEATGGVPGPGRIGRVAIGDILRKSARRFPDRVALTDGGRSVTYTELERDANRFANA 60 Query: 61 LVQRGLKPGEKISTICNNSVEFVKALFGIHRAGLVWVPINTMLGPSDMDYILGHAEVRFA 120 LV RGLKPG KIST+CNNS+EFVKALFGIHRAGLVWVPINTMLGP DM YIL HA V+ A Sbjct: 61 LVARGLKPGAKISTVCNNSIEFVKALFGIHRAGLVWVPINTMLGPDDMGYILDHAGVKVA 120 Query: 121 VIDDALHAQADRRAALEARGMEMIAIDLTGNAGKTGLQEFNGLLEGQSDIEPDIEINDRD 180 VIDD LH Q +RRAALEARG+++IAI+L G A TGL F+ L+EG S+IEPD+ +DRD Sbjct: 121 VIDDNLHGQPERRAALEARGIDLIAINLAGKAADTGLPVFDQLIEGLSEIEPDVAFDDRD 180 Query: 181 LAMIIYTSGTTSRPKGAMHCHLAVVMAVMSNCIEMQLSRDDGITGQFPLFHCAGHVLLLS 240 LAMIIYTSGTTSRPKGAMHCHLAV MAVMSN IEMQLSR DGITGQFPLFHCA HVLLLS Sbjct: 181 LAMIIYTSGTTSRPKGAMHCHLAVTMAVMSNAIEMQLSRKDGITGQFPLFHCAAHVLLLS 240 Query: 241 YLSVGGRMALMRGFDPVACMEAIVRDKLTVFVGLSLMYQAILDHPRRRDYDLSGLRCCIY 300 YL VGG+MA+MRGFDPVACMEAI R+KLTVF+GL LMYQ ILDHPRR+++DLS LRCCIY Sbjct: 241 YLIVGGQMAIMRGFDPVACMEAIQRNKLTVFIGLPLMYQVILDHPRRKEFDLSSLRCCIY 300 Query: 301 TMAPMGKPLLERAIADLCPNFVLSSGQTEMYPATTMSRPEVQLDRFGNYWGESLIVNETA 360 TMAPM +PLLERAIA+LCP FV SGQTEMYPATTMS+P+ QL RFGNYWGES +VNETA Sbjct: 301 TMAPMPRPLLERAIAELCPTFVQPSGQTEMYPATTMSQPDRQLARFGNYWGESTLVNETA 360 Query: 361 IMDDNGNLLPRGEIGELVHRGPNVMMGYYKDPRSTEEARKFGWHHTGDLALIDGNGEVLF 420 IMDD GNLLP GE+GE+VHRGPNVM+GYYKDP +TE ARKFGWHHTGDLALID +GEVLF Sbjct: 361 IMDDAGNLLPPGEVGEIVHRGPNVMLGYYKDPEATEAARKFGWHHTGDLALIDEHGEVLF 420 Query: 421 LDRKKDMIKSGGENVASVKIEETLLAHPAVQNAAVVGLPHPQWGEAVSAFVKLKPGAVAD 480 LDRKKDMIKSGGENVAS+KIEETLLAHP+V NAAVVGLPHPQWGEAVS FVKLKPGA A Sbjct: 421 LDRKKDMIKSGGENVASIKIEETLLAHPSVMNAAVVGLPHPQWGEAVSGFVKLKPGASAT 480 Query: 481 EAGIEAHCRKHLGGFQVPKLVRILEEMPMTATGKLRKVELRQQYSGHFV 529 EA I HC+KHLGGFQVPKL+RI++EMPMTATGKLRKVELR Q++ HF+ Sbjct: 481 EAEIVEHCKKHLGGFQVPKLLRIVDEMPMTATGKLRKVELRNQFTDHFM 529