BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0042.0005.p         (221 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_532473.1| hypothetical protein RPC_2604 [Rhodopseudomonas...   150   2e-34
ref|YP_001240136.1| hypothetical protein BBta_4169 [Bradyrhizobi...   139   2e-31
ref|ZP_08629792.1| hypothetical protein CSIRO_2887 [Bradyrhizobi...   130   1e-28
ref|YP_318398.1| hypothetical protein Nwi_1785 [Nitrobacter wino...   129   2e-28
ref|ZP_07027133.1| conserved hypothetical protein [Afipia sp. 1N...   121   6e-26

>ref|YP_532473.1| hypothetical protein RPC_2604 [Rhodopseudomonas palustris BisB18]
 gb|ABD88154.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
          Length = 422

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/171 (53%), Positives = 112/171 (65%), Gaps = 17/171 (9%)

Query: 17  PIADKPPA----DKPVLASLDPAANKATDAVKPPTANDVTAAPMPPLVITADPDAE---D 69
           P+  KPPA     K +L   DP+A K T+    P A        PP+VI A  DAE    
Sbjct: 223 PVTQKPPAPLVPAKSILGPPDPSAAKLTEPEARPAAGS------PPVVIAA-VDAEPTGS 275

Query: 70  DAPQAQIHRTEFGVDLGTANSVNGLRALWRGLLKSKANAPLAALRPIIVIKENSNGLGMQ 129
           DA      RTEFG+DLG ANSV GLR LW+ LLKS  NA L ALRP++V+KE ++G GMQ
Sbjct: 276 DAEPVTAQRTEFGIDLGGANSVEGLRILWQRLLKS--NASLTALRPLLVVKERNSGAGMQ 333

Query: 130 LRLVAGPLNDAGTAARICAGLSLVQRTCETAIYDGQRLALN-EPPAGAKPA 179
           LRLVAGP++DA TAA++CAGL+  +R CETAIYDGQRL+     PA A+P+
Sbjct: 334 LRLVAGPISDASTAAKLCAGLASSERFCETAIYDGQRLSTGAAQPATARPS 384


>ref|YP_001240136.1| hypothetical protein BBta_4169 [Bradyrhizobium sp. BTAi1]
 gb|ABQ36230.1| hypothetical protein BBta_4169 [Bradyrhizobium sp. BTAi1]
          Length = 395

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 71/120 (59%), Positives = 87/120 (72%), Gaps = 2/120 (1%)

Query: 62  TADPDAEDDAPQAQIHRTEFGVDLGTANSVNGLRALWRGLLKSKANAPLAALRPIIVIKE 121
           +A P    D+    + +TEF VDLG ANS+ GLR +WRGL  SK NA LAALRPII++KE
Sbjct: 214 SAGPTDSSDSVATAVQKTEFAVDLGGANSIGGLRTMWRGL--SKTNADLAALRPIIILKE 271

Query: 122 NSNGLGMQLRLVAGPLNDAGTAARICAGLSLVQRTCETAIYDGQRLALNEPPAGAKPAPS 181
             +G GMQLRL AGPL+DA  AARICA L+ +QRTCET +YDGQRL+L + P G+  A S
Sbjct: 272 GQSGPGMQLRLGAGPLSDAAAAARICATLTELQRTCETTVYDGQRLSLRDEPDGSDAAKS 331


>ref|ZP_08629792.1| hypothetical protein CSIRO_2887 [Bradyrhizobiaceae bacterium SG-6C]
 gb|EGP07647.1| hypothetical protein CSIRO_2887 [Bradyrhizobiaceae bacterium SG-6C]
          Length = 382

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/144 (49%), Positives = 95/144 (65%), Gaps = 11/144 (7%)

Query: 76  IHRTEFGVDLGTANSVNGLRALWRGLLKSKANAPLAALRPIIVIKENSNGLGMQLRLVAG 135
           + +TEFGVDLG A S+ GLRA+WRG LK  A   L  L+P+IV++E  +GLGMQLRLVAG
Sbjct: 244 VRKTEFGVDLGGAKSIEGLRAVWRGALKVYAKQ-LEPLQPVIVVRERHDGLGMQLRLVAG 302

Query: 136 PLNDAGTAARICAG-LSLVQRTCETAIYDGQRLAL-NEPPAGAKP-APSHRRAVPKRAVA 192
           PL+DA  AAR+CAG L+   R CETA+Y+GQRL++ +E P   +P A  HR     R   
Sbjct: 303 PLSDAAEAARLCAGFLTESNRPCETAVYEGQRLSMVSEQPEAKQPEARPHRSKRKSR--- 359

Query: 193 PPPQQQQPVAEDKKPEPTTISSMF 216
               Q+   A +++ +P+  SS F
Sbjct: 360 ----QRTEAAPEERSKPSAFSSFF 379


>ref|YP_318398.1| hypothetical protein Nwi_1785 [Nitrobacter winogradskyi Nb-255]
 gb|ABA05046.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255]
          Length = 422

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 68/131 (51%), Positives = 90/131 (68%), Gaps = 6/131 (4%)

Query: 78  RTEFGVDLGTANSVNGLRALWRGLLKSKANAPLAALRPIIVIKENSNGLGMQLRLVAGPL 137
           RTEFG+DLG+A S+ GLR LW+ LLKS+    L +L PIIV+KE SNG G+Q+RLVAGPL
Sbjct: 277 RTEFGIDLGSAASIKGLRTLWQSLLKSEPKE-LTSLHPIIVLKETSNGNGIQMRLVAGPL 335

Query: 138 NDAGTAARICAGLSLVQRTCETAIYDGQRLALNEPPAGAKPAPSHRRAVPKRAVAPPPQQ 197
            DA TAARICA LS   +TC T ++DGQRLA+NE    +   P+ ++  PK    PP  +
Sbjct: 336 TDAATAARICAVLSEDGQTCGTTVFDGQRLAMNEDGKDSAVTPATKK--PK---TPPASR 390

Query: 198 QQPVAEDKKPE 208
           ++P  +  + E
Sbjct: 391 RRPARKSTRVE 401


>ref|ZP_07027133.1| conserved hypothetical protein [Afipia sp. 1NLS2]
 gb|EFI51976.1| conserved hypothetical protein [Afipia sp. 1NLS2]
          Length = 383

 Score =  121 bits (304), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 69/130 (53%), Positives = 88/130 (67%), Gaps = 7/130 (5%)

Query: 65  PDAEDDAPQAQIHRTEFGVDLGTANSVNGLRALWRGLLKSKANAPLAALRPIIVIKENSN 124
           P+  + AP+  +   EFGVDLG+ANSV GLRA+WR  LK K    + +L+P+IV++E  N
Sbjct: 226 PEHAEAAPEKIVRPVEFGVDLGSANSVEGLRAVWRNALK-KVPDLVGSLQPLIVVREGQN 284

Query: 125 GLGMQLRLVAGPLNDAGTAARICAGLSLVQRTCETAIYDGQRLALNEPPAGA-----KPA 179
           GLG++L LVAGPLNDA  AA++CAGL   +  CETA++DGQRLAL E P GA     KP 
Sbjct: 285 GLGLRLHLVAGPLNDAAAAAKLCAGLIANRHRCETALFDGQRLAL-ESPLGARVPREKPR 343

Query: 180 PSHRRAVPKR 189
              R  V KR
Sbjct: 344 RQARSHVEKR 353