BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0042.0003.p         (169 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_532473.1| hypothetical protein RPC_2604 [Rhodopseudomonas...    85   4e-15
ref|YP_781701.1| hypothetical protein RPE_2784 [Rhodopseudomonas...    84   8e-15
ref|ZP_08629792.1| hypothetical protein CSIRO_2887 [Bradyrhizobi...    82   3e-14
ref|YP_486469.1| hypothetical protein RPB_2856 [Rhodopseudomonas...    81   5e-14
ref|NP_771249.1| hypothetical protein blr4609 [Bradyrhizobium ja...    81   6e-14

>ref|YP_532473.1| hypothetical protein RPC_2604 [Rhodopseudomonas palustris BisB18]
 gb|ABD88154.1| conserved hypothetical protein [Rhodopseudomonas palustris
          BisB18]
          Length = 422

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 37/65 (56%), Positives = 54/65 (83%)

Query: 20 LAEEDALDRRMLWRLGSWGVAAVGAVTVAVMANQSALTLRRDQVAAVDLARQAQQLQTLA 79
          LAEE+ LDRR LWRLGSW V ++GA+ +A++A+QS++ +R++Q AA DLARQ+QQ+Q +A
Sbjct: 4  LAEEENLDRRALWRLGSWAVGSIGALVLAILASQSSIQVRQEQAAAADLARQSQQIQRIA 63

Query: 80 KESHN 84
          KE+  
Sbjct: 64 KEAQT 68


>ref|YP_781701.1| hypothetical protein RPE_2784 [Rhodopseudomonas palustris BisA53]
 gb|ABJ06721.1| conserved hypothetical protein [Rhodopseudomonas palustris
          BisA53]
          Length = 465

 Score = 84.0 bits (206), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 43/87 (49%), Positives = 62/87 (71%), Gaps = 4/87 (4%)

Query: 1  LAKDRDNLAAEFDTES----TAXLAEEDALDRRMLWRLGSWGVAAVGAVTVAVMANQSAL 56
          +A++RD+LA   +TE+       +AEE+ LDRR LWRLGSW V ++ A+ +A+M +QS++
Sbjct: 1  MARNRDDLADSLNTEAGRGLFGLVAEEEDLDRRALWRLGSWAVGSIAALVLAIMVSQSSI 60

Query: 57 TLRRDQVAAVDLARQAQQLQTLAKESH 83
            R+DQ  A DLARQAQQ+Q L KE+ 
Sbjct: 61 QGRQDQGVAGDLARQAQQIQRLTKEAQ 87


>ref|ZP_08629792.1| hypothetical protein CSIRO_2887 [Bradyrhizobiaceae bacterium
          SG-6C]
 gb|EGP07647.1| hypothetical protein CSIRO_2887 [Bradyrhizobiaceae bacterium
          SG-6C]
          Length = 382

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/68 (54%), Positives = 50/68 (73%)

Query: 17 TAXLAEEDALDRRMLWRLGSWGVAAVGAVTVAVMANQSALTLRRDQVAAVDLARQAQQLQ 76
          T  LAEED  D R +WRL SWGV +VG + +A+MA +S   + RDQ+A+ +LARQ+QQ+Q
Sbjct: 22 TRFLAEEDEFDGRSMWRLASWGVGSVGVLIIAIMATRSPAAINRDQLASAELARQSQQVQ 81

Query: 77 TLAKESHN 84
           +AKES N
Sbjct: 82 WIAKESQN 89


>ref|YP_486469.1| hypothetical protein RPB_2856 [Rhodopseudomonas palustris HaA2]
 gb|ABD07558.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2]
          Length = 432

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 62/89 (69%), Gaps = 5/89 (5%)

Query: 1  LAKDRDNLAAEFDTESTA-----XLAEEDALDRRMLWRLGSWGVAAVGAVTVAVMANQSA 55
          +A++ D+LA  F T+ +       +A+E+ LD R  WRL SW   ++GA+ +A++A Q+A
Sbjct: 1  MARNSDDLADSFATDESGGWLARFVADEEDLDTRAKWRLASWAAGSLGALVIAILATQTA 60

Query: 56 LTLRRDQVAAVDLARQAQQLQTLAKESHN 84
             +RDQVAAVDLARQ+QQ+Q +AKES +
Sbjct: 61 TERKRDQVAAVDLARQSQQIQRVAKESQS 89


>ref|NP_771249.1| hypothetical protein blr4609 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC49874.1| blr4609 [Bradyrhizobium japonicum USDA 110]
          Length = 459

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/89 (61%), Positives = 64/89 (71%), Gaps = 5/89 (5%)

Query: 1  LAKDRDNLAAEFDTESTA-----XLAEEDALDRRMLWRLGSWGVAAVGAVTVAVMANQSA 55
          +AKD D LA  F T+ T       LAEE A DRRM+WRLGSWGVAAVGAV +AVMANQ+ 
Sbjct: 1  MAKDSDPLADAFGTKETGGLFSGLLAEESAFDRRMMWRLGSWGVAAVGAVVIAVMANQAQ 60

Query: 56 LTLRRDQVAAVDLARQAQQLQTLAKESHN 84
          L  RRDQ+A+ DL RQA +LQ L +ES N
Sbjct: 61 LGWRRDQMASADLVRQADRLQLLTRESQN 89