BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0041.0070.p (216 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004614077.1| two component LuxR family transcriptional re... 345 2e-93 ref|YP_002823888.1| nodulation protein NodW [Sinorhizobium fredi... 344 4e-93 ref|YP_001985040.1| two-component response regulator protein - n... 343 7e-93 ref|YP_765294.1| putative NodW-like nodulation protein transcrip... 342 2e-92 ref|YP_002973359.1| LuxR family two component transcriptional re... 342 3e-92 >ref|YP_004614077.1| two component LuxR family transcriptional regulator [Mesorhizobium opportunistum WSM2075] gb|AEH89983.1| two component transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] Length = 215 Score = 345 bits (886), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 170/213 (79%), Positives = 187/213 (87%) Query: 1 MTAEEQIVFIVDDDERIREALSELLASHGVETATFASAGAYIDAEKPDLPACLVLDVELP 60 MT +Q+VFIVDDD RIREAL ELL SHG+ F SAG Y+ A+KPD+PACL+LDVELP Sbjct: 1 MTPHDQMVFIVDDDVRIREALGELLESHGMRAVAFGSAGDYVLADKPDVPACLILDVELP 60 Query: 61 DINGLDLQGQIAQGDHPPIVFITGHGDIPSSVRAIKHGALDFLTKPFSDDDVMAAIRVAI 120 DINGLDLQ QIA+GDHPPIVFITGHGDIPSSVRAIKHGA+DFLTKPFSD D+M AIR AI Sbjct: 61 DINGLDLQKQIAEGDHPPIVFITGHGDIPSSVRAIKHGAVDFLTKPFSDTDLMVAIRAAI 120 Query: 121 AQDRVRRADRAELCGLRQRYLSLTPRERDVLPLVVSGLMNKQAAAELGISEVTLQIHRRN 180 AQDR RR++RAEL LRQRY LT RER+VLPLVVSGL+NKQAAAELGISEVTLQIHRRN Sbjct: 121 AQDRERRSERAELTVLRQRYRELTQREREVLPLVVSGLLNKQAAAELGISEVTLQIHRRN 180 Query: 181 VMQKMAAASLADLVRSAQRLEIPVTHSRRGGGT 213 VMQKM AASLADLVR A+RLEIP++HSRR GG Sbjct: 181 VMQKMVAASLADLVRMAERLEIPISHSRRTGGN 213 >ref|YP_002823888.1| nodulation protein NodW [Sinorhizobium fredii NGR234] gb|AAQ87184.1| Transcriptional regulatory protein [Sinorhizobium fredii NGR234] gb|ACP23135.1| putative NodW, Nodulation protein [Sinorhizobium fredii NGR234] Length = 216 Score = 344 bits (883), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 171/216 (79%), Positives = 189/216 (87%) Query: 1 MTAEEQIVFIVDDDERIREALSELLASHGVETATFASAGAYIDAEKPDLPACLVLDVELP 60 MT+++ +VFIVDDDERIREALS+LL SHG+ F SAG Y+ A+KPD+PACL+LDVELP Sbjct: 1 MTSDDHVVFIVDDDERIREALSDLLDSHGIRAIAFGSAGEYVSADKPDVPACLILDVELP 60 Query: 61 DINGLDLQGQIAQGDHPPIVFITGHGDIPSSVRAIKHGALDFLTKPFSDDDVMAAIRVAI 120 DINGLDLQ QIA DHPPIVFITGHGDIPSSVRAIKHGA+DFLTKPFSD D+MAAI AI Sbjct: 61 DINGLDLQRQIADVDHPPIVFITGHGDIPSSVRAIKHGAVDFLTKPFSDADLMAAIGAAI 120 Query: 121 AQDRVRRADRAELCGLRQRYLSLTPRERDVLPLVVSGLMNKQAAAELGISEVTLQIHRRN 180 A+DRV+RA RAEL L QRY LTPRER+VLPLVVSGL+NKQAAAELGISEVTLQIHRRN Sbjct: 121 AEDRVKRAARAELSMLGQRYRELTPREREVLPLVVSGLLNKQAAAELGISEVTLQIHRRN 180 Query: 181 VMQKMAAASLADLVRSAQRLEIPVTHSRRGGGTDRE 216 VM KMAA SLADLVR A+RLEIP+THSRR GG D E Sbjct: 181 VMHKMAADSLADLVRIAERLEIPITHSRRVGGNDHE 216 >ref|YP_001985040.1| two-component response regulator protein - nodW mutant supressor protein [Rhizobium etli CIAT 652] gb|ACE94490.1| two-component response regulator protein - nodW mutant supressor protein [Rhizobium etli CIAT 652] Length = 213 Score = 343 bits (881), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 169/213 (79%), Positives = 188/213 (88%) Query: 1 MTAEEQIVFIVDDDERIREALSELLASHGVETATFASAGAYIDAEKPDLPACLVLDVELP 60 MTA++ IVFIVDDDERIREAL ELL SHG+ F SAG Y+ +KPD+PACL+LD+ELP Sbjct: 1 MTADDHIVFIVDDDERIREALGELLDSHGMRAVAFESAGDYVKMDKPDVPACLILDIELP 60 Query: 61 DINGLDLQGQIAQGDHPPIVFITGHGDIPSSVRAIKHGALDFLTKPFSDDDVMAAIRVAI 120 DINGLDLQGQIA GDHPPIVFITGHGDIPSSVRAIK GA+DFLTKPFSD D+MAAI AI Sbjct: 61 DINGLDLQGQIADGDHPPIVFITGHGDIPSSVRAIKSGAVDFLTKPFSDADLMAAIHAAI 120 Query: 121 AQDRVRRADRAELCGLRQRYLSLTPRERDVLPLVVSGLMNKQAAAELGISEVTLQIHRRN 180 AQDR +R +RAEL L++ YL LTPRER+VLPLVVSGL+NKQAAAELGISEVTLQIHRRN Sbjct: 121 AQDRRKRGERAELDMLKRHYLDLTPREREVLPLVVSGLLNKQAAAELGISEVTLQIHRRN 180 Query: 181 VMQKMAAASLADLVRSAQRLEIPVTHSRRGGGT 213 VMQKMAAASLADLVR A++LEIP+THSRR GG Sbjct: 181 VMQKMAAASLADLVRIAEKLEIPITHSRRVGGN 213 >ref|YP_765294.1| putative NodW-like nodulation protein transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] emb|CAK12500.1| putative NodW-like nodulation protein transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 213 Score = 342 bits (878), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 171/213 (80%), Positives = 188/213 (88%) Query: 1 MTAEEQIVFIVDDDERIREALSELLASHGVETATFASAGAYIDAEKPDLPACLVLDVELP 60 MTA++ IVFIVDDDERIREAL ELL SHG+ F SA Y+ A+KPD+PACLVLD+ELP Sbjct: 1 MTADDHIVFIVDDDERIREALGELLDSHGMNAIAFESACDYVRADKPDVPACLVLDIELP 60 Query: 61 DINGLDLQGQIAQGDHPPIVFITGHGDIPSSVRAIKHGALDFLTKPFSDDDVMAAIRVAI 120 DINGLDLQ QIA DHPPIVFITGHGDIPSSVRAIKHGA+DFLTKPFSD ++MAAI AI Sbjct: 61 DINGLDLQRQIADRDHPPIVFITGHGDIPSSVRAIKHGAVDFLTKPFSDANLMAAIHAAI 120 Query: 121 AQDRVRRADRAELCGLRQRYLSLTPRERDVLPLVVSGLMNKQAAAELGISEVTLQIHRRN 180 AQDR +RA+RAE+ LRQ YL LTPRER+VLPLVVSGL+NKQAAAELGISEVTLQIHRRN Sbjct: 121 AQDREKRAERAEIDVLRQHYLDLTPREREVLPLVVSGLLNKQAAAELGISEVTLQIHRRN 180 Query: 181 VMQKMAAASLADLVRSAQRLEIPVTHSRRGGGT 213 VMQKMAAASLADLVR A+RLEIP+THSRR GG Sbjct: 181 VMQKMAAASLADLVRIAERLEIPITHSRRVGGN 213 >ref|YP_002973359.1| LuxR family two component transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gb|ACS59398.1| two component transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 213 Score = 342 bits (876), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 168/213 (78%), Positives = 189/213 (88%) Query: 1 MTAEEQIVFIVDDDERIREALSELLASHGVETATFASAGAYIDAEKPDLPACLVLDVELP 60 MTA++ IVF+VDDDER+REALSELL SHG+ TF SAG Y+ A+KPD+PACL+LD+ELP Sbjct: 1 MTADDHIVFVVDDDERVREALSELLDSHGMRAITFESAGDYVKADKPDVPACLILDIELP 60 Query: 61 DINGLDLQGQIAQGDHPPIVFITGHGDIPSSVRAIKHGALDFLTKPFSDDDVMAAIRVAI 120 DINGLDLQ QIA DHPPIVFITGHGDIPSSVRAIKHGA+DFLTKPFSD D+MAAI A+ Sbjct: 61 DINGLDLQRQIADRDHPPIVFITGHGDIPSSVRAIKHGAVDFLTKPFSDADLMAAIHAAL 120 Query: 121 AQDRVRRADRAELCGLRQRYLSLTPRERDVLPLVVSGLMNKQAAAELGISEVTLQIHRRN 180 A+D +R+ RAEL LR+ YL LTPRER+VLPLVVSGL+NKQAAAELGISEVTLQIHRRN Sbjct: 121 AEDLEKRSQRAELDMLRRHYLDLTPREREVLPLVVSGLLNKQAAAELGISEVTLQIHRRN 180 Query: 181 VMQKMAAASLADLVRSAQRLEIPVTHSRRGGGT 213 VMQKMAAASLADLVR A+RLEIP+THSRR GG Sbjct: 181 VMQKMAAASLADLVRIAERLEIPITHSRRVGGN 213