BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0041.0068.p (231 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004614075.1| two component LuxR family transcriptional re... 334 5e-90 gb|EGE56195.1| putative transcriptional regulator protein (NodW-... 323 1e-86 ref|YP_472842.1| two-component response regulator protein [Rhizo... 317 1e-84 ref|YP_002279374.1| LuxR family transcriptional regulator [Rhizo... 308 4e-82 ref|YP_001985042.1| NodW-like transcriptional regulator [Rhizobi... 308 4e-82 >ref|YP_004614075.1| two component LuxR family transcriptional regulator [Mesorhizobium opportunistum WSM2075] gb|AEH89981.1| two component transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] Length = 242 Score = 334 bits (857), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 169/227 (74%), Positives = 192/227 (84%), Gaps = 2/227 (0%) Query: 1 MRIDAPL-QRRPPSTRPLSGDNAAQPVVLIVDDDASVREALSELILSVGFQSIGFASTRE 59 MR+D PL QR P +R + + QP+V+IVDDDASVREALSELILS+GF+ + FASTRE Sbjct: 1 MRVDQPLLQRSTPVSRQRNAE-PQQPLVIIVDDDASVREALSELILSMGFEPVCFASTRE 59 Query: 60 LLEADVLQRPGCLILDVRMPGSSGLDLQADLVQNGNPKPIIFLTGHGDIPMTVQAMKAGA 119 LL+ADVL PGCLILDVRMPG+SGLDLQ L NGNPKPIIFLTGHGDIPMTVQAMKAGA Sbjct: 60 LLDADVLDSPGCLILDVRMPGASGLDLQHHLASNGNPKPIIFLTGHGDIPMTVQAMKAGA 119 Query: 120 IDFLTKPVRDQALLDAVLAGITMDAARRQQALVVKGYLERVRTLTPREREVLHRVAHGGV 179 +DFLTKPVRDQ LLDAV+AGI +DA RR A+VVK +ERV TLTPREREVLH VA G + Sbjct: 120 VDFLTKPVRDQTLLDAVIAGIAVDAKRRADAVVVKRNIERVETLTPREREVLHEVARGRL 179 Query: 180 NKQIAFELGISEVTVKLHRSNVMRKLQATSIGDLIRIWEALPKAVRE 226 NKQIAF+LGISEVTVKLHR NVMRK++A SIG+LIR WE LP A+R+ Sbjct: 180 NKQIAFDLGISEVTVKLHRGNVMRKMEAASIGELIRAWETLPPAMRK 226 >gb|EGE56195.1| putative transcriptional regulator protein (NodW-like) [Rhizobium etli CNPAF512] Length = 230 Score = 323 bits (828), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 160/226 (70%), Positives = 183/226 (80%) Query: 1 MRIDAPLQRRPPSTRPLSGDNAAQPVVLIVDDDASVREALSELILSVGFQSIGFASTREL 60 MR+D PL RR S QP+V+IVDDDASVREALSELILS GFQS+ FASTREL Sbjct: 1 MRVDQPLLRRSASLSLQCRYQEDQPLVVIVDDDASVREALSELILSAGFQSVSFASTREL 60 Query: 61 LEADVLQRPGCLILDVRMPGSSGLDLQADLVQNGNPKPIIFLTGHGDIPMTVQAMKAGAI 120 L+AD+L+ PGCLILDVRMPG+SGL LQ+ L +NG KPIIFLTGHGDIPMTVQAMKAGA+ Sbjct: 61 LDADILENPGCLILDVRMPGASGLHLQSHLAENGISKPIIFLTGHGDIPMTVQAMKAGAV 120 Query: 121 DFLTKPVRDQALLDAVLAGITMDAARRQQALVVKGYLERVRTLTPREREVLHRVAHGGVN 180 DFLTKPVRDQ LLDAV A I MDA RR +A + K ++R+ TLT REREVLH VA G +N Sbjct: 121 DFLTKPVRDQTLLDAVTAAIAMDAERRVEAAIAKRNIKRLETLTQREREVLHEVARGRLN 180 Query: 181 KQIAFELGISEVTVKLHRSNVMRKLQATSIGDLIRIWEALPKAVRE 226 KQIAF+LGISEVTVKLHRSNVM K++A SIG+LIR WE LP +R+ Sbjct: 181 KQIAFDLGISEVTVKLHRSNVMHKMEAASIGELIRAWETLPAQMRQ 226 >ref|YP_472842.1| two-component response regulator protein [Rhizobium etli CFN 42] gb|ABC94115.1| probable two-component response regulator protein [Rhizobium etli CFN 42] Length = 230 Score = 317 bits (811), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 160/229 (69%), Positives = 182/229 (79%), Gaps = 6/229 (2%) Query: 1 MRIDAPLQRRPPSTRPLSGD---NAAQPVVLIVDDDASVREALSELILSVGFQSIGFAST 57 MR+D P RR + PLS QP+V+IVDDDASVREALSELILS GFQ + FAST Sbjct: 1 MRVDQPFVRR---SAPLSAQREREEDQPLVMIVDDDASVREALSELILSAGFQPVSFAST 57 Query: 58 RELLEADVLQRPGCLILDVRMPGSSGLDLQADLVQNGNPKPIIFLTGHGDIPMTVQAMKA 117 RELL+AD+L RPGCLILDVRMPG+SGL LQ+ L +NG KPIIFLTGHGDIPMTVQAMKA Sbjct: 58 RELLDADILDRPGCLILDVRMPGASGLHLQSHLAENGIAKPIIFLTGHGDIPMTVQAMKA 117 Query: 118 GAIDFLTKPVRDQALLDAVLAGITMDAARRQQALVVKGYLERVRTLTPREREVLHRVAHG 177 GA+DFLTKP RDQ LLDAV A I MD RR +A + +ER+ TLT REREVLH+VA G Sbjct: 118 GAVDFLTKPARDQTLLDAVTAAIVMDGERRAEAAIANRNIERLETLTQREREVLHQVARG 177 Query: 178 GVNKQIAFELGISEVTVKLHRSNVMRKLQATSIGDLIRIWEALPKAVRE 226 +NKQIAF+LGISEVTVKLHRSNVM K+QA SIG+LIR WE LP +R+ Sbjct: 178 RLNKQIAFDLGISEVTVKLHRSNVMHKMQAASIGELIRAWETLPAQMRQ 226 >ref|YP_002279374.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gb|ACI58634.1| two component transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 230 Score = 308 bits (789), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 158/226 (69%), Positives = 182/226 (80%) Query: 1 MRIDAPLQRRPPSTRPLSGDNAAQPVVLIVDDDASVREALSELILSVGFQSIGFASTREL 60 MR+D PL RR QP+V+IVDDDASVREALSELILS GFQS+ FASTREL Sbjct: 1 MRVDQPLLRRSAPLSLQGRYEEDQPLVIIVDDDASVREALSELILSAGFQSVSFASTREL 60 Query: 61 LEADVLQRPGCLILDVRMPGSSGLDLQADLVQNGNPKPIIFLTGHGDIPMTVQAMKAGAI 120 L+AD+L+ PGCLILDVRMPG+SGL LQ+ L +NG KPIIFLTGHGDIPMTVQAMKAGA+ Sbjct: 61 LDADILENPGCLILDVRMPGASGLHLQSHLAENGISKPIIFLTGHGDIPMTVQAMKAGAV 120 Query: 121 DFLTKPVRDQALLDAVLAGITMDAARRQQALVVKGYLERVRTLTPREREVLHRVAHGGVN 180 DFLTKPVRDQ LLDA+ A I MDA RR +A + K ++R+ TLT REREVLH VA G +N Sbjct: 121 DFLTKPVRDQTLLDAITAAIAMDAERRAEAAIAKRNVKRLETLTQREREVLHEVARGRLN 180 Query: 181 KQIAFELGISEVTVKLHRSNVMRKLQATSIGDLIRIWEALPKAVRE 226 KQIAF+LGISEVTVKLHRSNVM K++A SIG+LIR WE LP +R+ Sbjct: 181 KQIAFDLGISEVTVKLHRSNVMHKMEAASIGELIRAWETLPAQMRQ 226 >ref|YP_001985042.1| NodW-like transcriptional regulator [Rhizobium etli CIAT 652] gb|ACE94492.1| probable transcriptional regulator protein (NodW-like) [Rhizobium etli CIAT 652] Length = 230 Score = 308 bits (789), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 158/226 (69%), Positives = 182/226 (80%) Query: 1 MRIDAPLQRRPPSTRPLSGDNAAQPVVLIVDDDASVREALSELILSVGFQSIGFASTREL 60 MR+D PL RR QP+V+IVDDDASVREALSELILS GFQS+ FASTREL Sbjct: 1 MRVDQPLLRRSAPLSLQCRYQEDQPLVIIVDDDASVREALSELILSAGFQSVSFASTREL 60 Query: 61 LEADVLQRPGCLILDVRMPGSSGLDLQADLVQNGNPKPIIFLTGHGDIPMTVQAMKAGAI 120 L+AD+L+ PGCLILDVRMPG+SGL LQ+ L +NG +PIIFLTGHGDIPMTVQAMKAGA+ Sbjct: 61 LDADILENPGCLILDVRMPGASGLHLQSHLAENGISRPIIFLTGHGDIPMTVQAMKAGAV 120 Query: 121 DFLTKPVRDQALLDAVLAGITMDAARRQQALVVKGYLERVRTLTPREREVLHRVAHGGVN 180 DFLTKPVRDQ LLDAV A I MDA RR +A + K ++R+ TLT REREVLH VA G +N Sbjct: 121 DFLTKPVRDQTLLDAVTAAIAMDAERRAEAAIAKRNIKRLETLTQREREVLHEVARGRLN 180 Query: 181 KQIAFELGISEVTVKLHRSNVMRKLQATSIGDLIRIWEALPKAVRE 226 KQIAF+LGISEVTVKLHRSNVM K++A SIG+LIR WE LP +R+ Sbjct: 181 KQIAFDLGISEVTVKLHRSNVMHKMEAASIGELIRAWETLPAQMRQ 226