BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0041.0065.p (757 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_576312.1| hypothetical protein Nham_1002 [Nitrobacter ham... 807 0.0 ref|ZP_01045828.1| hypothetical protein NB311A_01804 [Nitrobacte... 800 0.0 ref|YP_317490.1| hypothetical protein Nwi_0874 [Nitrobacter wino... 797 0.0 ref|YP_001925579.1| hypothetical protein Mpop_2889 [Methylobacte... 374 e-101 ref|YP_001640228.1| hypothetical protein Mext_2766 [Methylobacte... 371 e-100 >ref|YP_576312.1| hypothetical protein Nham_1002 [Nitrobacter hamburgensis X14] gb|ABE61852.1| protein of unknown function DUF490 [Nitrobacter hamburgensis X14] Length = 1487 Score = 807 bits (2084), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/626 (68%), Positives = 494/626 (78%), Gaps = 30/626 (4%) Query: 1 MRIRRLFIVGSAVAALGLIAAAVLGIVLYGMAGGSGENQQDVLASLVSRTLSTPATQVHV 60 MR RR ++ +A L +A A G+V+Y M G +G+NQQD+LA LVSRTLSTPA QVH+ Sbjct: 1 MRARRTILLAAAALGLAGVATA--GVVVYKMIGAAGDNQQDLLAGLVSRTLSTPAIQVHI 58 Query: 61 GAVDGVLSSDATVRDVSITDKDGVWLTLDKARLVWRRSALLLGRLEIDRLEIGTLEIKRK 120 GAVDGVLSSDAT+RDV+ITDKDG WL LD+ARLVWRR+ALLLGRLEIDRLEIGTLEI+RK Sbjct: 59 GAVDGVLSSDATIRDVTITDKDGTWLKLDRARLVWRRTALLLGRLEIDRLEIGTLEIRRK 118 Query: 121 PLPSDQPAAESDQP----------------------------ILPDLPVKVQVRAFDLRA 152 P +DQP AE +QP ILPDLPVKVQV+AFDL A Sbjct: 119 PQAADQPVAEPEQPAAETGQSGTEQSAPAAQPGPSAAESSQSILPDLPVKVQVKAFDLHA 178 Query: 153 LTLGQSILGEALSVAATGNTELGSPSEGLVFNLDATRKDFPGHFKAALAYVPQGNALTLD 212 L LG+ +LGEA+S+AATGNTELGSPSEGL+ NLDATRKD PG FK ALA+VPQGNALTLD Sbjct: 179 LVLGEPVLGEAVSLAATGNTELGSPSEGLILNLDATRKDSPGRFKVALAFVPQGNALTLD 238 Query: 213 VTLDEPAHGLMSKLGHLPGEPPVTFALGGKGTLDSFRGALKLQAGPTIDATGTITLDRNG 272 VTLDEP+HGL+S+LG PGEPP+ FAL GKGTLDSFRGALK QAGPTIDATG ITLDR+G Sbjct: 239 VTLDEPSHGLLSRLGRFPGEPPIAFALRGKGTLDSFRGALKFQAGPTIDATGAITLDRSG 298 Query: 273 PGRVLATRLASHLEPLLPAIAAPVFAGETHLDSTTHFGDDGSVALDGLTLTSRLARLDAK 332 GRVLATR++ HL P LP +AA VFAGET LDS T GDDGSV LDGLTLTSRLARL+ K Sbjct: 299 TGRVLATRVSGHLGPWLPPLAASVFAGETRLDSATRIGDDGSVVLDGLTLTSRLARLEVK 358 Query: 333 GLLRADKVVDFAASIRALPSNGDVTETDQGSIRSLVFDSRVNGPIKAPAASIKLTLSGAH 392 G L ADK++DF+A++R+LPSNGDVTETD+GSIR L FD RVNGP KAP S KL +S A Sbjct: 359 GALGADKMMDFSATVRSLPSNGDVTETDRGSIRILTFDGRVNGPAKAPRVSAKLAVSDAR 418 Query: 393 LPDGDVEALDASITAVPRAEASDPATRIILDANLRASGIAPRDASLAAAIGDTASLVLHG 452 LPDG+++AL+ASI VP AE SD AT I +DA+LRASGIA RD +LAAAIGD+ASLVL G Sbjct: 419 LPDGNLDALEASIDVVPDAELSDHATTIAIDASLRASGIALRDPALAAAIGDSASLVLKG 478 Query: 453 DTDLGGRARIERLEIGTSTVQATYAGDVSAGRLNGRATGTVPDLGAFADLAGLKLKGSVA 512 T+LGG+A+IERLEIGTSTVQA Y G+ S RL GRATGTVPDLG F LAGL L G + Sbjct: 479 STNLGGQAKIERLEIGTSTVQAAYTGEASRDRLRGRATGTVPDLGRFGGLAGLNLAGEIK 538 Query: 513 FGLDLDTDLQRGSFDIRMSGAGEKLATGLAPLDGLAGARLALAADISGDGRDTYTVRGAS 572 GLDLD DL+RG D R+SG G++ ATGLA LD LAG R+ LAAD S G DTY VR AS Sbjct: 539 LGLDLDGDLRRGRIDARLSGTGDRFATGLAALDELAGPRVTLAADFSSGGNDTYRVRAAS 598 Query: 573 IDGAHVAVRAKGTVTRDSSDLSVRVD 598 +DGAHV VRA+G++TR++SDL+ ++ Sbjct: 599 LDGAHVTVRARGSLTREASDLAAHIE 624 >ref|ZP_01045828.1| hypothetical protein NB311A_01804 [Nitrobacter sp. Nb-311A] gb|EAQ36199.1| hypothetical protein NB311A_01804 [Nitrobacter sp. Nb-311A] Length = 1488 Score = 800 bits (2066), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/626 (69%), Positives = 497/626 (79%), Gaps = 30/626 (4%) Query: 1 MRIRR-LFIVGSAVAALGLIAAAVLGIVLYGMAGGSGENQQDVLASLVSRTLSTPATQVH 59 MR RR +F+ +A AL + AA G+ +Y M GG+G+NQQD+LA LVSRTLSTPATQVH Sbjct: 1 MRARRTIFLAAAAALALAGVTAA--GVAVYKMIGGAGDNQQDLLAGLVSRTLSTPATQVH 58 Query: 60 VGAVDGVLSSDATVRDVSITDKDGVWLTLDKARLVWRRSALLLGRLEIDRLEIGTLEIKR 119 +GAVDG LSSDAT+RDV+ITDK+G WL LD+ARLVWRR+ALLLGRLEIDRLEIGTLEI+R Sbjct: 59 IGAVDGALSSDATIRDVTITDKEGTWLKLDRARLVWRRTALLLGRLEIDRLEIGTLEIRR 118 Query: 120 KPLPSDQP-------AAESDQ--------------------PILPDLPVKVQVRAFDLRA 152 KPL +DQP AAESDQ PILP+LPVKVQV+AFDL A Sbjct: 119 KPLAADQPVTESEQPAAESDQSDTEQNAAAQPGPSAATSSQPILPNLPVKVQVKAFDLHA 178 Query: 153 LTLGQSILGEALSVAATGNTELGSPSEGLVFNLDATRKDFPGHFKAALAYVPQGNALTLD 212 L L + +LGEA+S+AATGNTELGSPSEGL+FNLDATRKD PG FK ALA+VP+GNALTLD Sbjct: 179 LVLSEPVLGEAVSIAATGNTELGSPSEGLIFNLDATRKDSPGRFKVALAFVPKGNALTLD 238 Query: 213 VTLDEPAHGLMSKLGHLPGEPPVTFALGGKGTLDSFRGALKLQAGPTIDATGTITLDRNG 272 VTLDEP+HGL+SKLG P EPP+ FAL GKGTLDSFRGALK QAGPTIDATG+I LDR+G Sbjct: 239 VTLDEPSHGLLSKLGRFPDEPPIAFALRGKGTLDSFRGALKFQAGPTIDATGSIMLDRDG 298 Query: 273 PGRVLATRLASHLEPLLPAIAAPVFAGETHLDSTTHFGDDGSVALDGLTLTSRLARLDAK 332 GRVLATR+ HL P LP +AA VFAGET LDS T GDDGSV +DGLTLTSRLARL+AK Sbjct: 299 TGRVLATRINGHLGPWLPPLAASVFAGETRLDSATRIGDDGSVVMDGLTLTSRLARLEAK 358 Query: 333 GLLRADKVVDFAASIRALPSNGDVTETDQGSIRSLVFDSRVNGPIKAPAASIKLTLSGAH 392 G L ADK++DF+A++R+LPSNGDVTETD GSIRSL FD RVNGP KAP S KL +SGA Sbjct: 359 GALGADKMMDFSATVRSLPSNGDVTETDHGSIRSLTFDGRVNGPTKAPRVSAKLAVSGAR 418 Query: 393 LPDGDVEALDASITAVPRAEASDPATRIILDANLRASGIAPRDASLAAAIGDTASLVLHG 452 LPDG ++AL+ASI P AE SD AT I +DANLRASGIA RD +LAAAIGD+ SLVL G Sbjct: 419 LPDGSLDALEASINVAPDAELSDLATTIAIDANLRASGIALRDPALAAAIGDSVSLVLKG 478 Query: 453 DTDLGGRARIERLEIGTSTVQATYAGDVSAGRLNGRATGTVPDLGAFADLAGLKLKGSVA 512 TDLGG A+IERLE+GTSTVQ TY G+ S RL G ATGTVPDLG F LAGL L G+V Sbjct: 479 TTDLGGEAKIERLEVGTSTVQTTYTGEASRDRLRGHATGTVPDLGRFDGLAGLNLAGAVK 538 Query: 513 FGLDLDTDLQRGSFDIRMSGAGEKLATGLAPLDGLAGARLALAADISGDGRDTYTVRGAS 572 LDLD DLQRG D ++SG G++ ATGL LDGLAG R+ LAAD S G DTYTVR AS Sbjct: 539 LDLDLDGDLQRGRIDAKLSGTGDRFATGLPALDGLAGPRVTLAADFSSGGNDTYTVRAAS 598 Query: 573 IDGAHVAVRAKGTVTRDSSDLSVRVD 598 +DGAHVAVRAKG++TR++SDL+ R++ Sbjct: 599 LDGAHVAVRAKGSLTREASDLAARIE 624 >ref|YP_317490.1| hypothetical protein Nwi_0874 [Nitrobacter winogradskyi Nb-255] gb|ABA04138.1| Protein of unknown function DUF490 [Nitrobacter winogradskyi Nb-255] Length = 1489 Score = 797 bits (2058), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/602 (68%), Positives = 479/602 (79%), Gaps = 28/602 (4%) Query: 25 GIVLYGMAGGSGENQQDVLASLVSRTLSTPATQVHVGAVDGVLSSDATVRDVSITDKDGV 84 G+V Y M GG G+NQQD+LA LVSRTLSTPATQVH+GAVDG LSSDAT+RDV+ITDK+G Sbjct: 24 GVVAYKMIGGIGDNQQDLLAGLVSRTLSTPATQVHIGAVDGALSSDATIRDVTITDKEGT 83 Query: 85 WLTLDKARLVWRRSALLLGRLEIDRLEIGTLEIKRKPLPSDQPAAESDQP---------- 134 WL LD+ARLVWRR+ALLLGRLEIDRLEIGTLEI+RKPL +DQP AE +QP Sbjct: 84 WLKLDRARLVWRRTALLLGRLEIDRLEIGTLEIRRKPLAADQPVAEPEQPAVETGQPDTE 143 Query: 135 ------------------ILPDLPVKVQVRAFDLRALTLGQSILGEALSVAATGNTELGS 176 ILPDLPVKVQV+AFDL AL LG+ +LG+A+SVAATGNTELGS Sbjct: 144 PSAPAAQPGPSAAESSQSILPDLPVKVQVKAFDLHALVLGEPVLGKAVSVAATGNTELGS 203 Query: 177 PSEGLVFNLDATRKDFPGHFKAALAYVPQGNALTLDVTLDEPAHGLMSKLGHLPGEPPVT 236 PSEGLVFNLDATRKD PG FK LA+VP+ NALTLDV+LDEP+HGL+SKLG P EPP+ Sbjct: 204 PSEGLVFNLDATRKDSPGRFKVELAFVPKSNALTLDVSLDEPSHGLLSKLGRFPDEPPIA 263 Query: 237 FALGGKGTLDSFRGALKLQAGPTIDATGTITLDRNGPGRVLATRLASHLEPLLPAIAAPV 296 FAL GKGTLDSFRGALK QAGPTIDATG I LDR+G GRVLATR+ HL P LP +AA V Sbjct: 264 FALRGKGTLDSFRGALKFQAGPTIDATGAIMLDRSGTGRVLATRINGHLGPWLPPLAASV 323 Query: 297 FAGETHLDSTTHFGDDGSVALDGLTLTSRLARLDAKGLLRADKVVDFAASIRALPSNGDV 356 FAGET LDS T GDDGSVA+DGLTLTSRLARL+ KG L ADK++DF+A++R+LPSNGDV Sbjct: 324 FAGETRLDSATRIGDDGSVAMDGLTLTSRLARLEVKGALGADKMMDFSATVRSLPSNGDV 383 Query: 357 TETDQGSIRSLVFDSRVNGPIKAPAASIKLTLSGAHLPDGDVEALDASITAVPRAEASDP 416 TETDQGSIRSL FD RVNG KAP S KL +S A LPDG+++AL+ASI +P AE +D Sbjct: 384 TETDQGSIRSLTFDGRVNGLAKAPRVSAKLAVSDARLPDGNLDALEASINVIPDAELNDL 443 Query: 417 ATRIILDANLRASGIAPRDASLAAAIGDTASLVLHGDTDLGGRARIERLEIGTSTVQATY 476 AT + +DA+LRASGIA RD +LAAAIGD+ASLVL G T+LGG+A+IERLE GTST+QA Y Sbjct: 444 ATTVAIDASLRASGIALRDPALAAAIGDSASLVLKGSTNLGGQAKIERLEAGTSTIQAAY 503 Query: 477 AGDVSAGRLNGRATGTVPDLGAFADLAGLKLKGSVAFGLDLDTDLQRGSFDIRMSGAGEK 536 G+ S RL G ATG VPDLG F LAGL+L G+V GLDLD DL+RG D ++SG G++ Sbjct: 504 TGEASRDRLRGHATGAVPDLGRFGGLAGLQLAGAVRLGLDLDGDLRRGRIDAKLSGTGDR 563 Query: 537 LATGLAPLDGLAGARLALAADISGDGRDTYTVRGASIDGAHVAVRAKGTVTRDSSDLSVR 596 ATGL LDGLAG R+ LAAD S G DTYTVR AS+D AHV VRAKG++TRD+SDL+ R Sbjct: 564 FATGLPALDGLAGPRVTLAADFSSGGNDTYTVRAASLDAAHVTVRAKGSLTRDASDLAAR 623 Query: 597 VD 598 ++ Sbjct: 624 IE 625 >ref|YP_001925579.1| hypothetical protein Mpop_2889 [Methylobacterium populi BJ001] gb|ACB81044.1| protein of unknown function DUF490 [Methylobacterium populi BJ001] Length = 1441 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 242/604 (40%), Positives = 325/604 (53%), Gaps = 12/604 (1%) Query: 18 LIAAAVLGIVLYGMA------GGSGENQQDVLASLVSRTLSTPATQVHVGAVDGVLSSDA 71 ++AAA L + L A + + ++ VL L+S+ LSTP++QV +GAVDG LSSDA Sbjct: 1 MLAAAFLSVALLFAAVFPTDDTRAADGEKTVLGGLLSKALSTPSSQVTIGAVDGALSSDA 60 Query: 72 TVRDVSITDKDGVWLTLDKARLVWRRSALLLGRLEIDRLEIGTLEIKRKPLPSDQPA-AE 130 T+R V I+D DG WL LD+ARLVWRR ALL GRLE+D LEIG LE+ RKP+P PA AE Sbjct: 61 TIRGVVISDSDGPWLKLDRARLVWRRLALLSGRLEVDSLEIGRLEVLRKPVPGPTPAEAE 120 Query: 131 SDQPILPDLPVKVQVRAFDLRALTLGQSILGEALSVAATGNTELGSPSEGLVFNLDATRK 190 D +LPDLPVKV+++AF L L LG+S+ G+ +A G +LG+PSEGL N D R Sbjct: 121 PDGSLLPDLPVKVEIKAFTLAELVLGESVAGQPARLAGEGKAKLGNPSEGLDVNADFRRL 180 Query: 191 DFPGHFKAALAYVPQGNALTLDVTLDEPAHGLMSKLGHLPGEPPVTFALGGKGTLDSFRG 250 D G F A L +VP+G L + L EP GL+SK +LPG PP+ F L G GTLD+F Sbjct: 181 DAAGRFVARLLFVPKGERLEVKANLIEPQGGLLSKAANLPGTPPINFDLDGSGTLDAFNA 240 Query: 251 ALKLQAGPTIDATGTITLDRNGPGRVLATRLASHLEPLLPAIAAPVFAGETHLDSTTHFG 310 L AGP I A G L R G R L+ LAS +E L+P AA +F+GET LD F Sbjct: 241 RLDFDAGPEIGAKGGARLSRIGTDRRLSLDLASRIEGLVPGPAAAIFSGETKLDGGMAFS 300 Query: 311 DDGSVALDGLTLTSRLARLDAKGLLRADKVVDFAASIRALPSNGDVTETDQGSIRSLVFD 370 D G+ +D L L SR ARL G L AD+V DF + RA+P+ G VT+ + + +LVFD Sbjct: 301 DTGAFRIDRLDLASRTARLGIGGTLTADRVADFTITARAVPTEGGVTKAAEAELETLVFD 360 Query: 371 SRVNGPIKAPAASIKLTLSGAHLPDGDVEALDASITAVP----RAEASDPATRIILDANL 426 + GP+ +P L +G + +E +DA ++ P R R + A+ Sbjct: 361 GSLKGPLASPRVKGNLKAAGLRTRESSLERVDAVLSVEPLNAGRTGGEPKTQRFAITADA 420 Query: 427 RASGIAPRDASLAAAIGDTASLVLHGDTDLGGRARIERLEIGTSTVQATYAGDVSAGRLN 486 G+ D +L A+G A LVL G +E L + + T +A YAG + L Sbjct: 421 AMDGLRLADPALRRAVGSRAKLVLRAAAGADGVLDVETLTVDSDTARAAYAGRLGQNTLT 480 Query: 487 GRATGTVPDLGAFADLAGLKLKGSVAFGLDLDTDLQRGSFDIRMSGAGEKLATGLAPLDG 546 G +PDLGAF+ +AG L G + L D R + + G L G D Sbjct: 481 GAVEAMLPDLGAFSGMAGRTLAGRLDAKATLSGDPARKALSADLDLRGGGLVLGEPAADR 540 Query: 547 LAGARLALAADISGDGRDTYTVRGASIDGAHVAVRAKGTVTRDSSDLSVRVDXYVASTSS 606 L G L +S D Y +GA + +G ++D++ RVD S Sbjct: 541 LVGRAPNLTGRVS-QTYDGYGFERLRFEGAGLVATLQGLANAKTADVAARVDLKNLSALD 599 Query: 607 HRRA 610 R A Sbjct: 600 ERLA 603 >ref|YP_001640228.1| hypothetical protein Mext_2766 [Methylobacterium extorquens PA1] gb|ABY31157.1| protein of unknown function DUF490 [Methylobacterium extorquens PA1] Length = 1463 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 234/573 (40%), Positives = 313/573 (54%), Gaps = 4/573 (0%) Query: 37 ENQQDVLASLVSRTLSTPATQVHVGAVDGVLSSDATVRDVSITDKDGVWLTLDKARLVWR 96 + ++ VL L+S+ LSTP++QV +GAVDG LSSDAT+RDV I+D DG WL LD+ARLVWR Sbjct: 54 DGEKTVLGGLLSKALSTPSSQVTIGAVDGALSSDATIRDVVISDSDGPWLKLDRARLVWR 113 Query: 97 RSALLLGRLEIDRLEIGTLEIKRKPLPSDQPA-AESDQPILPDLPVKVQVRAFDLRALTL 155 R ALL GRLE+D LEIG LE+ R+P+P PA AE D +LPDLPVKV++++F L L L Sbjct: 114 RLALLSGRLEVDTLEIGRLEVLRRPVPGPTPAEAEPDGSLLPDLPVKVEIKSFALAELVL 173 Query: 156 GQSILGEALSVAATGNTELGSPSEGLVFNLDATRKDFPGHFKAALAYVPQGNALTLDVTL 215 G+S+ G+ +A G LG+PSEGL + D R D G F A L +VP+G L + +L Sbjct: 174 GESVAGQPARLAGEGKATLGNPSEGLDVSADFRRLDAAGRFIARLLFVPKGERLEVKASL 233 Query: 216 DEPAHGLMSKLGHLPGEPPVTFALGGKGTLDSFRGALKLQAGPTIDATGTITLDRNGPGR 275 EP GL+SK +LPG PP+ F L G+GTLDSF L AGP I A G L R G R Sbjct: 234 VEPEDGLLSKAANLPGTPPINFDLDGRGTLDSFNARLDFDAGPEIGAKGGARLSRIGTDR 293 Query: 276 VLATRLASHLEPLLPAIAAPVFAGETHLDSTTHFGDDGSVALDGLTLTSRLARLDAKGLL 335 L+ L S +E L+P AA +F+GET LD F D GS +D L L SR ARL G L Sbjct: 294 RLSLDLTSRIEGLVPGPAAAIFSGETKLDGGMAFSDTGSFRIDRLDLASRTARLAIGGTL 353 Query: 336 RADKVVDFAASIRALPSNGDVTETDQGSIRSLVFDSRVNGPIKAPAASIKLTLSGAHLPD 395 AD++ DF S RA+P+ VT+ + +LVFD + GP+ AP L +G + Sbjct: 354 TADRIADFTISARAVPTEDGVTKAADAELDTLVFDGSLKGPLSAPRVKGNLKAAGLRTSE 413 Query: 396 GDVEALDASITAVPRAEASDPATRIILDANLRASGIAPRDASLAAAIGDTASLVLHGDTD 455 +E +DA + P +D A R + A+ G+ D +L A+G A L+L Sbjct: 414 SSLERVDAVLNVEP--TGADKAQRFTITADAAVEGLRLADPALRRAVGSRAKLILRAAAG 471 Query: 456 LGGRARIERLEIGTSTVQATYAGDVSAGRLNGRATGTVPDLGAFADLAGLKLKGSVAFGL 515 G + L + + T +A YAG + L G + D+GAF+ +AG L G + Sbjct: 472 SDGVLDVTTLTVESDTARAAYAGRIGQNTLAGTLEAALSDVGAFSGIAGRTLAGRLDAKA 531 Query: 516 DLDTDLQRGSFDIRMSGAGEKLATGLAPLDGLAGARLALAADISGDGRDTYTVRGASIDG 575 L D R + + G L G A D L G AL IS D Y G Sbjct: 532 ILSGDPARKALSADLDLRGGNLVLGEATADRLVGRAPALTGRIS-QTYDGYGFERLRFQG 590 Query: 576 AHVAVRAKGTVTRDSSDLSVRVDXYVASTSSHR 608 A + +G ++D++ RVD S R Sbjct: 591 AGLVATLQGQANAKTADVAARVDLKNLSAFDER 623