BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0041.0061.p (247 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_744748.1| LysR family transcriptional regulator [Granulib... 404 e-111 ref|YP_004674237.1| HTH-type transcriptional regulator [Hyphomic... 387 e-106 ref|NP_356288.2| LysR family transcriptional regulator [Agrobact... 387 e-105 ref|ZP_04682932.1| LysR family transcriptional regulator [Ochrob... 383 e-104 ref|ZP_08666757.1| LysR family transcriptional regulator [Paraco... 378 e-103 >ref|YP_744748.1| LysR family transcriptional regulator [Granulibacter bethesdensis CGDNIH1] gb|ABI61826.1| transcriptional regulators, LysR family [Granulibacter bethesdensis CGDNIH1] Length = 331 Score = 404 bits (1038), Expect = e-111, Method: Compositional matrix adjust. Identities = 188/244 (77%), Positives = 213/244 (87%) Query: 1 VSPTHDGAAFYERALRVVADVEEAETLFRHAAAEPSGRLRVDVPGRIGRLIIAPALPAFL 60 V+PT DGAAFY+R RV+ADVE+ E LFR AA+PSGRLR+DVPGRIGRLIIAPALP FL Sbjct: 86 VAPTQDGAAFYQRCQRVIADVEDTENLFRQMAAQPSGRLRIDVPGRIGRLIIAPALPEFL 145 Query: 61 DRYPQIDIDLGVTDRAINLIEDSVDCVVRVGPLGDSGLIARPLGNLTLINVASPGYLARH 120 D YPQI+IDLGVTDRA+NL+EDS+DCV+RVGPL DSGLIARP+G L LINVASP YLARH Sbjct: 146 DLYPQINIDLGVTDRAVNLVEDSLDCVLRVGPLSDSGLIARPIGRLALINVASPAYLARH 205 Query: 121 GTPRTPDDLGAHWAVNYASPSTGRIEEWEWSEQGASRSIAMRGRVTANSAEAYIACCLAG 180 G P+ DDLG HWAVNYASPS+GR+E+WEW E G ++ MRGRVT NSAEAYIACCLAG Sbjct: 206 GMPQALDDLGQHWAVNYASPSSGRVEDWEWMEDGTLHTLPMRGRVTVNSAEAYIACCLAG 265 Query: 181 LGLIQIPVYDVKRHIDAGELVELMPRHRAAPMPMTLLYPHRQHLSRRLQVFADWLTDLLK 240 LGLIQIP YDV+ H+D GEL+E+MP +RA PMPMTLLYPHRQHLSRRLQ+FADWL DLLK Sbjct: 266 LGLIQIPAYDVRSHLDTGELIEIMPEYRADPMPMTLLYPHRQHLSRRLQIFADWLEDLLK 325 Query: 241 QKLL 244 + LL Sbjct: 326 RYLL 329 >ref|YP_004674237.1| HTH-type transcriptional regulator [Hyphomicrobium sp. MC1] emb|CCB63661.1| Uncharacterized HTH-type transcriptional regulator yhjC [Hyphomicrobium sp. MC1] Length = 309 Score = 387 bits (994), Expect = e-106, Method: Compositional matrix adjust. Identities = 179/247 (72%), Positives = 212/247 (85%) Query: 1 VSPTHDGAAFYERALRVVADVEEAETLFRHAAAEPSGRLRVDVPGRIGRLIIAPALPAFL 60 VSPT DG AFYER LRV+ADVEE E LFR AA+PSG+L+VDVPGRIGRLI+APALP FL Sbjct: 63 VSPTQDGVAFYERCLRVIADVEETEGLFRQTAAKPSGKLKVDVPGRIGRLIVAPALPDFL 122 Query: 61 DRYPQIDIDLGVTDRAINLIEDSVDCVVRVGPLGDSGLIARPLGNLTLINVASPGYLARH 120 D YP+I I+LGVTDRA+NL+EDS+DCV+RVGPL DS LIARP+G LTLINVASP YL RH Sbjct: 123 DTYPEISIELGVTDRAVNLVEDSIDCVLRVGPLTDSVLIARPMGRLTLINVASPSYLRRH 182 Query: 121 GTPRTPDDLGAHWAVNYASPSTGRIEEWEWSEQGASRSIAMRGRVTANSAEAYIACCLAG 180 P+TP DL HWA+ YASPSTGR E+WEW E G R+++MR RVT NSAEAYIAC LAG Sbjct: 183 RIPKTPADLTEHWAIQYASPSTGRTEDWEWFEDGILRTLSMRSRVTVNSAEAYIACALAG 242 Query: 181 LGLIQIPVYDVKRHIDAGELVELMPRHRAAPMPMTLLYPHRQHLSRRLQVFADWLTDLLK 240 LGLIQIP +DV+R+I+AGEL E+MP +RAAPMP+TLLYPHRQHLSRRLQ+FA+WL L+K Sbjct: 243 LGLIQIPAFDVRRYIEAGELCEVMPTYRAAPMPITLLYPHRQHLSRRLQIFAEWLEKLIK 302 Query: 241 QKLLAAE 247 ++++ A+ Sbjct: 303 REVVRAQ 309 >ref|NP_356288.2| LysR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gb|AAK89073.2| transcriptional regulator, LysR family [Agrobacterium tumefaciens str. C58] Length = 299 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 179/244 (73%), Positives = 210/244 (86%) Query: 1 VSPTHDGAAFYERALRVVADVEEAETLFRHAAAEPSGRLRVDVPGRIGRLIIAPALPAFL 60 VSPT DG+AFYER R++ADVE+ E LFR AA+PSGRLR+DVPGRIGRL+IAPALP FL Sbjct: 56 VSPTEDGSAFYERCQRLIADVEDTENLFRQTAAQPSGRLRIDVPGRIGRLVIAPALPQFL 115 Query: 61 DRYPQIDIDLGVTDRAINLIEDSVDCVVRVGPLGDSGLIARPLGNLTLINVASPGYLARH 120 D YPQIDI LGVTDRA++L+ED++DCV+RVGPL DSGLIARP+G L LINVASP YLA++ Sbjct: 116 DLYPQIDISLGVTDRAVDLVEDNIDCVLRVGPLSDSGLIARPIGKLRLINVASPAYLAQY 175 Query: 121 GTPRTPDDLGAHWAVNYASPSTGRIEEWEWSEQGASRSIAMRGRVTANSAEAYIACCLAG 180 G P+TP DL HWAVNYASPS+GR+E WEW E A S+ MR RVT N+AEAYIACCLAG Sbjct: 176 GAPKTPHDLSRHWAVNYASPSSGRVENWEWIENDALHSVPMRSRVTVNNAEAYIACCLAG 235 Query: 181 LGLIQIPVYDVKRHIDAGELVELMPRHRAAPMPMTLLYPHRQHLSRRLQVFADWLTDLLK 240 LGLIQIP YDV+ H+++GEL+E+MP HRA PMPMTLLY HRQHLSRRLQVFA+WL LL+ Sbjct: 236 LGLIQIPAYDVRLHLESGELIEVMPGHRAEPMPMTLLYSHRQHLSRRLQVFAEWLEALLR 295 Query: 241 QKLL 244 ++LL Sbjct: 296 RQLL 299 >ref|ZP_04682932.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG 3301] gb|EEQ94236.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG 3301] Length = 304 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 185/243 (76%), Positives = 208/243 (85%), Gaps = 1/243 (0%) Query: 1 VSPTHDGAAFYERALRVVADVEEAETLFRHAAAEPSGRLRVDVPGRIGRLIIAPALPAFL 60 VS T DGAAFYER L ++AD+EEAE LFR+ A PSG LR+DVPGRIGRLIIAPALP FL Sbjct: 56 VSTTQDGAAFYERCLSLIADMEEAENLFRNTAT-PSGTLRIDVPGRIGRLIIAPALPEFL 114 Query: 61 DRYPQIDIDLGVTDRAINLIEDSVDCVVRVGPLGDSGLIARPLGNLTLINVASPGYLARH 120 D YP+IDI LGVTDRA+NL+E+SVDCV+RVGPL DSGLIAR LG L LINVASP YL R+ Sbjct: 115 DAYPEIDIHLGVTDRAVNLVEESVDCVLRVGPLTDSGLIARSLGELPLINVASPAYLERY 174 Query: 121 GTPRTPDDLGAHWAVNYASPSTGRIEEWEWSEQGASRSIAMRGRVTANSAEAYIACCLAG 180 G P TP DL AHWA+NYASPS+GR+E WEWSE GA+RSI +RGRVT NSAEAYIACCLAG Sbjct: 175 GIPETPHDLSAHWAINYASPSSGRVEPWEWSEAGATRSIPVRGRVTVNSAEAYIACCLAG 234 Query: 181 LGLIQIPVYDVKRHIDAGELVELMPRHRAAPMPMTLLYPHRQHLSRRLQVFADWLTDLLK 240 LGLIQIP YDV+RH++AGEL+E+M RAAPM MT LY HRQHLSRRLQVFADWL LLK Sbjct: 235 LGLIQIPAYDVRRHLEAGELIEVMADMRAAPMRMTFLYSHRQHLSRRLQVFADWLEKLLK 294 Query: 241 QKL 243 ++L Sbjct: 295 REL 297 >ref|ZP_08666757.1| LysR family transcriptional regulator [Paracoccus sp. TRP] Length = 300 Score = 378 bits (971), Expect = e-103, Method: Compositional matrix adjust. Identities = 175/244 (71%), Positives = 207/244 (84%) Query: 1 VSPTHDGAAFYERALRVVADVEEAETLFRHAAAEPSGRLRVDVPGRIGRLIIAPALPAFL 60 V+PT DG AFYER R++ADV+EAE LFR + +PSGRLR+DVPGRIGRLIIAPALP FL Sbjct: 56 VAPTQDGLAFYERCQRLIADVDEAENLFRQSLIQPSGRLRIDVPGRIGRLIIAPALPEFL 115 Query: 61 DRYPQIDIDLGVTDRAINLIEDSVDCVVRVGPLGDSGLIARPLGNLTLINVASPGYLARH 120 DRYP ID+DLGVTDRA++L+E VDC +RVG L DS LIARP+G L LINVASP YL R+ Sbjct: 116 DRYPGIDVDLGVTDRAVDLVEAGVDCALRVGELEDSSLIARPIGKLALINVASPAYLERY 175 Query: 121 GTPRTPDDLGAHWAVNYASPSTGRIEEWEWSEQGASRSIAMRGRVTANSAEAYIACCLAG 180 G P TP DL H+AVNYASPS+GRIE+WEW E G + +AMRGRVT N+AEAYIACCLAG Sbjct: 176 GVPETPADLTHHYAVNYASPSSGRIEDWEWIETGTTHRLAMRGRVTVNNAEAYIACCLAG 235 Query: 181 LGLIQIPVYDVKRHIDAGELVELMPRHRAAPMPMTLLYPHRQHLSRRLQVFADWLTDLLK 240 LGLIQIP YDV+ H++AGEL+E+MP HRAAPMPMTLLYPHRQHLSRR+Q+FADWL +L+ Sbjct: 236 LGLIQIPAYDVRPHLEAGELIEVMPAHRAAPMPMTLLYPHRQHLSRRMQIFADWLDSILQ 295 Query: 241 QKLL 244 +++ Sbjct: 296 AQII 299