BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0041.0049.p (400 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004106946.1| type IV transporter subunit CagE/TrbE/VirB [... 559 e-157 ref|YP_001237628.1| conjugal transfer ATPase TrbE [Bradyrhizobiu... 533 e-149 ref|ZP_08627037.1| conjugative transfer protein TrbE [Bradyrhizo... 532 e-149 ref|YP_533396.1| conjugal transfer ATPase TrbE [Rhodopseudomonas... 510 e-142 ref|NP_949457.1| conjugal transfer ATPase TrbE [Rhodopseudomonas... 509 e-142 >ref|YP_004106946.1| type IV transporter subunit CagE/TrbE/VirB [Rhodopseudomonas palustris DX-1] gb|ADU42213.1| CagE, TrbE, VirB component of type IV transporter system, conserved region [Rhodopseudomonas palustris DX-1] Length = 813 Score = 559 bits (1440), Expect = e-157, Method: Compositional matrix adjust. Identities = 280/337 (83%), Positives = 287/337 (85%), Gaps = 45/337 (13%) Query: 1 VLRGFVDQTNRVLQLVEGFMPECTWLDDQDTLTYLHSTISTKRHRVRVPEIPMYIDALLA 60 VLRGF+DQTNRVLQLVEGFMP+C WLDDQ TLTYLHSTISTKRHRVRVPEIPMYIDALLA Sbjct: 154 VLRGFIDQTNRVLQLVEGFMPDCAWLDDQATLTYLHSTISTKRHRVRVPEIPMYIDALLA 213 Query: 61 DQPLTGGLEPMLGSANLRVLTIVGFPGATTPGILDDLNRLPFSYRWSTRAIMLDKTDATK 120 DQPLTGGLEPMLGSAN+RVLTIVGFPGATTPG+LDDLNRL FSYRWSTRAIMLDKTDATK Sbjct: 214 DQPLTGGLEPMLGSANVRVLTIVGFPGATTPGVLDDLNRLAFSYRWSTRAIMLDKTDATK 273 Query: 121 LLTKIRRQWFAKRKSIGAILKEVMTNEASTLLDTDAHNKALDADAALQELGSDQIGQAFV 180 LLTKIRRQWFAKRKSIGAILKEVMTNEASTLLDTDAHNKA+DADAALQELGSDQIGQAFV Sbjct: 274 LLTKIRRQWFAKRKSIGAILKEVMTNEASTLLDTDAHNKAIDADAALQELGSDQIGQAFV 333 Query: 181 TATITVWDRDPNAADEKLRLVEKVIQGRDFTCMIETVNAVEAWLGSLPGHVYANVRQPPV 240 TAT+TVWDRDPNAADEKLRLVEKVIQGRDFTCMIETVNAVEAWLGSLPGHVYANVRQPPV Sbjct: 334 TATLTVWDRDPNAADEKLRLVEKVIQGRDFTCMIETVNAVEAWLGSLPGHVYANVRQPPV 393 Query: 241 STLNLX---------------------------------------------TLVVGPTGA 255 STLNL TLVVGPTGA Sbjct: 394 STLNLAHMIPMSAVWAGEARDLHFKAPALLFGKTEGSTPFRFSLHVGDVGHTLVVGPTGA 453 Query: 256 GKSVLLALMALQFRRYPNSQIFAFDFGGSIRAAALGM 292 GKSVLLALMALQFRRYPNSQ+FAFDFGGSIRAAAL M Sbjct: 454 GKSVLLALMALQFRRYPNSQVFAFDFGGSIRAAALAM 490 >ref|YP_001237628.1| conjugal transfer ATPase TrbE [Bradyrhizobium sp. BTAi1] gb|ABQ33722.1| conjugal transfer protein trbE [Bradyrhizobium sp. BTAi1] Length = 813 Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust. Identities = 262/337 (77%), Positives = 282/337 (83%), Gaps = 45/337 (13%) Query: 1 VLRGFVDQTNRVLQLVEGFMPECTWLDDQDTLTYLHSTISTKRHRVRVPEIPMYIDALLA 60 +LRGFVD+TNRVLQLVEGFMPEC WLDD++TLTYLHSTISTKRHRVRVPEIPMY+DALLA Sbjct: 154 ILRGFVDRTNRVLQLVEGFMPECAWLDDEETLTYLHSTISTKRHRVRVPEIPMYLDALLA 213 Query: 61 DQPLTGGLEPMLGSANLRVLTIVGFPGATTPGILDDLNRLPFSYRWSTRAIMLDKTDATK 120 DQPLTGGLEPMLGSA+LR+LT+VGFP ATTPGILDDLNRLPF+YRWSTRAIMLDK DATK Sbjct: 214 DQPLTGGLEPMLGSAHLRILTVVGFPTATTPGILDDLNRLPFTYRWSTRAIMLDKADATK 273 Query: 121 LLTKIRRQWFAKRKSIGAILKEVMTNEASTLLDTDAHNKALDADAALQELGSDQIGQAFV 180 LLT+IRRQWFAKRKS+ AILKE+MTNEAS LLDTDAHNKA+DADAALQELGSDQIG+AFV Sbjct: 274 LLTRIRRQWFAKRKSVAAILKEIMTNEASALLDTDAHNKAMDADAALQELGSDQIGEAFV 333 Query: 181 TATITVWDRDPNAADEKLRLVEKVIQGRDFTCMIETVNAVEAWLGSLPGHVYANVRQPPV 240 TATI+VWD +P +ADEKLRLVEKVIQGRDFTCMIETVNAVEAWLGS+PGHVYANVRQPP+ Sbjct: 334 TATISVWDGEPASADEKLRLVEKVIQGRDFTCMIETVNAVEAWLGSVPGHVYANVRQPPI 393 Query: 241 STLNLX---------------------------------------------TLVVGPTGA 255 STLNL TLVVGPTGA Sbjct: 394 STLNLAHMIPLSAVWAGEPRDHHFKAPPLFLAKTEGSTPFRFSLHVGDVGHTLVVGPTGA 453 Query: 256 GKSVLLALMALQFRRYPNSQIFAFDFGGSIRAAALGM 292 GKSVLLALMALQFRRYP SQIFAFDFGGSIRAAA+ M Sbjct: 454 GKSVLLALMALQFRRYPESQIFAFDFGGSIRAAAIAM 490 >ref|ZP_08627037.1| conjugative transfer protein TrbE [Bradyrhizobiaceae bacterium SG-6C] gb|EGP10317.1| conjugative transfer protein TrbE [Bradyrhizobiaceae bacterium SG-6C] Length = 813 Score = 532 bits (1370), Expect = e-149, Method: Compositional matrix adjust. Identities = 267/337 (79%), Positives = 278/337 (82%), Gaps = 45/337 (13%) Query: 1 VLRGFVDQTNRVLQLVEGFMPECTWLDDQDTLTYLHSTISTKRHRVRVPEIPMYIDALLA 60 VLRGFVDQTNRVL LVEGFMPEC WLDD+ TLTYLHSTIST+RHRVRVPEIPMY+D LLA Sbjct: 154 VLRGFVDQTNRVLGLVEGFMPECAWLDDEATLTYLHSTISTRRHRVRVPEIPMYLDGLLA 213 Query: 61 DQPLTGGLEPMLGSANLRVLTIVGFPGATTPGILDDLNRLPFSYRWSTRAIMLDKTDATK 120 DQPLTGGLEPMLGSAN+RVLTIVGFPGATTPGILDDLNRL F YRWSTRAIMLDKTDATK Sbjct: 214 DQPLTGGLEPMLGSANVRVLTIVGFPGATTPGILDDLNRLAFPYRWSTRAIMLDKTDATK 273 Query: 121 LLTKIRRQWFAKRKSIGAILKEVMTNEASTLLDTDAHNKALDADAALQELGSDQIGQAFV 180 L+T+IRRQWFAKRKSIGAILKEVMTNEASTLLDTDAHNKA+DADAALQELGSDQ+ QA+V Sbjct: 274 LVTRIRRQWFAKRKSIGAILKEVMTNEASTLLDTDAHNKAIDADAALQELGSDQVRQAYV 333 Query: 181 TATITVWDRDPNAADEKLRLVEKVIQGRDFTCMIETVNAVEAWLGSLPGHVYANVRQPPV 240 TATITVWD DP AADEKLR VEKVIQGRDFTCMIETVNAVEAWLGSLPGHVYANVR+PPV Sbjct: 334 TATITVWDGDPGAADEKLRQVEKVIQGRDFTCMIETVNAVEAWLGSLPGHVYANVRRPPV 393 Query: 241 STLNLX---------------------------------------------TLVVGPTGA 255 STLNL TLVVGPTGA Sbjct: 394 STLNLAHMIPMSAVWAGEARDLHLKGPPLVFGKTEGSTPFRFSLHVGDVGHTLVVGPTGA 453 Query: 256 GKSVLLALMALQFRRYPNSQIFAFDFGGSIRAAALGM 292 GKSVLLALMALQFRRYPNSQ+FAFDFGGSIRAA M Sbjct: 454 GKSVLLALMALQFRRYPNSQVFAFDFGGSIRAATTAM 490 >ref|YP_533396.1| conjugal transfer ATPase TrbE [Rhodopseudomonas palustris BisB18] gb|ABD89077.1| ATPase [Rhodopseudomonas palustris BisB18] Length = 813 Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust. Identities = 256/337 (75%), Positives = 275/337 (81%), Gaps = 45/337 (13%) Query: 1 VLRGFVDQTNRVLQLVEGFMPECTWLDDQDTLTYLHSTISTKRHRVRVPEIPMYIDALLA 60 V RGFVD+T+RVL LVEGFMPE WLDD++TLTYLHST+STKR RVRVPEIPMY+DALLA Sbjct: 154 VQRGFVDRTDRVLGLVEGFMPELKWLDDEETLTYLHSTVSTKRQRVRVPEIPMYLDALLA 213 Query: 61 DQPLTGGLEPMLGSANLRVLTIVGFPGATTPGILDDLNRLPFSYRWSTRAIMLDKTDATK 120 DQPLTGGLEPMLG ++LRVLT+VGFP TTPGILD+LNRL F+YRW+TRAIMLDKTDAT+ Sbjct: 214 DQPLTGGLEPMLGQSHLRVLTVVGFPTVTTPGILDELNRLAFAYRWATRAIMLDKTDATR 273 Query: 121 LLTKIRRQWFAKRKSIGAILKEVMTNEASTLLDTDAHNKALDADAALQELGSDQIGQAFV 180 LLTKIRRQWFAKRKSI AILKEVMTNEASTLLD+DAHNKALDADAALQELGSD IGQAFV Sbjct: 274 LLTKIRRQWFAKRKSIAAILKEVMTNEASTLLDSDAHNKALDADAALQELGSDAIGQAFV 333 Query: 181 TATITVWDRDPNAADEKLRLVEKVIQGRDFTCMIETVNAVEAWLGSLPGHVYANVRQPPV 240 TAT+TVWD DP ADEKLRLVEKVIQGRDFTCM+E+VNAVEAWLGSLPGH YANVRQPPV Sbjct: 334 TATVTVWDDDPRVADEKLRLVEKVIQGRDFTCMVESVNAVEAWLGSLPGHAYANVRQPPV 393 Query: 241 STLNLX---------------------------------------------TLVVGPTGA 255 STLNL TLVVGPTGA Sbjct: 394 STLNLAHMIPLSAVWAGPARDEHFGAPALFFGRTEGATPFRFSLHVGDVGHTLVVGPTGA 453 Query: 256 GKSVLLALMALQFRRYPNSQIFAFDFGGSIRAAALGM 292 GKSVLLALMALQFRRYP++QIFAFDFGGSIRAAAL M Sbjct: 454 GKSVLLALMALQFRRYPHNQIFAFDFGGSIRAAALAM 490 >ref|NP_949457.1| conjugal transfer ATPase TrbE [Rhodopseudomonas palustris CGA009] emb|CAE29562.1| conjugal transfer protein trbE [Rhodopseudomonas palustris CGA009] Length = 813 Score = 509 bits (1310), Expect = e-142, Method: Compositional matrix adjust. Identities = 256/337 (75%), Positives = 275/337 (81%), Gaps = 45/337 (13%) Query: 1 VLRGFVDQTNRVLQLVEGFMPECTWLDDQDTLTYLHSTISTKRHRVRVPEIPMYIDALLA 60 V RGFVD+T+RVL LVEGFMPE WLDD++TLTYLHST+STKR RVRVPEIPMY+DALLA Sbjct: 154 VQRGFVDRTDRVLGLVEGFMPELKWLDDEETLTYLHSTVSTKRQRVRVPEIPMYLDALLA 213 Query: 61 DQPLTGGLEPMLGSANLRVLTIVGFPGATTPGILDDLNRLPFSYRWSTRAIMLDKTDATK 120 DQPLTGGLEPMLG ++LRVLT+VGFP TTPGILD+LNRL F+YRW+TRAIMLDKTDAT+ Sbjct: 214 DQPLTGGLEPMLGQSHLRVLTVVGFPTVTTPGILDELNRLAFAYRWATRAIMLDKTDATR 273 Query: 121 LLTKIRRQWFAKRKSIGAILKEVMTNEASTLLDTDAHNKALDADAALQELGSDQIGQAFV 180 LLTKIRRQWFAKRKSI AILKEVMTNEASTLLD+DAHNKALDADAALQELGSD IGQAFV Sbjct: 274 LLTKIRRQWFAKRKSIAAILKEVMTNEASTLLDSDAHNKALDADAALQELGSDAIGQAFV 333 Query: 181 TATITVWDRDPNAADEKLRLVEKVIQGRDFTCMIETVNAVEAWLGSLPGHVYANVRQPPV 240 TAT+TVWD DP ADEKLRLVEKVIQGRDFTCM+E+VNAVEAWLGSLPGH YANVRQPPV Sbjct: 334 TATVTVWDDDPRIADEKLRLVEKVIQGRDFTCMVESVNAVEAWLGSLPGHAYANVRQPPV 393 Query: 241 STLNLX---------------------------------------------TLVVGPTGA 255 STLNL TLVVGPTGA Sbjct: 394 STLNLAHMIPLSAVWAGPARDEHLGAPALFFGRTEGATPFRFSLHVGDVGHTLVVGPTGA 453 Query: 256 GKSVLLALMALQFRRYPNSQIFAFDFGGSIRAAALGM 292 GKSVLLALMALQFRRYP++QIFAFDFGGSIRAAAL M Sbjct: 454 GKSVLLALMALQFRRYPHNQIFAFDFGGSIRAAALAM 490