BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0041.0048.p         (141 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_03541931.1| D-isomer specific 2-hydroxyacid dehydrogenase...    92   3e-17
ref|ZP_06495069.1| putative hydroxyacid dehydrogenase [Pseudomon...    84   7e-15
gb|EGH79909.1| D-3-phosphoglycerate dehydrogenase [Pseudomonas s...    83   1e-14
gb|EGH55417.1| D-3-phosphoglycerate dehydrogenase [Pseudomonas s...    83   1e-14
gb|EGH32793.1| D-3-phosphoglycerate dehydrogenase [Pseudomonas s...    83   2e-14

>ref|ZP_03541931.1| D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding
           [Comamonas testosteroni KF-1]
 gb|EED66217.1| D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding
           [Comamonas testosteroni KF-1]
          Length = 320

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/131 (46%), Positives = 84/131 (64%)

Query: 5   FRVLVTGDSLAPAAVNVLSEIGADVVLMHDAVTPERLAHEMARAPTQAILMRGNPVFSAA 64
           F VLVT +  AP A  V+ + G  +  M + +T E LA  +A+   QA+++RG+   SAA
Sbjct: 8   FNVLVTAEHWAPEAQAVVQQAGGQIHFMAEPITAESLAQRLAQTGAQALVLRGSKPVSAA 67

Query: 65  TIAGNPHLRVIAKHGAGVDSVDIDAATASRVLVMVAGDANAPAVAEHTIALILALGRDVV 124
            +   P LR++AK+GAGVDSVD++AA    V V VA  ANAPAVAEH +AL+LAL R + 
Sbjct: 68  VLRAAPALRIVAKNGAGVDSVDMEAARTQGVAVAVAQAANAPAVAEHALALMLALVRQLP 127

Query: 125 SLNTRTRTGAW 135
            L+ + R G W
Sbjct: 128 QLDQQVRAGGW 138


>ref|ZP_06495069.1| putative hydroxyacid dehydrogenase [Pseudomonas syringae pv.
           syringae FF5]
          Length = 267

 Score = 84.0 bits (206), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 77/133 (57%), Gaps = 1/133 (0%)

Query: 6   RVLVTGDSLAPAAVNVLSEIGADVVLMHDAVTPERLAHEMARAPTQAILMRGNPVFSAAT 65
           ++L+TG +LA  A++  +++G  +      ++ E L   +      AI++R   + +   
Sbjct: 4   KILLTGPALAHDAMSYANDLGIQIFPSTPYLSAEELTSLIRDVQPDAIIVRQGKL-TREM 62

Query: 66  IAGNPHLRVIAKHGAGVDSVDIDAATASRVLVMVAGDANAPAVAEHTIALILALGRDVVS 125
           I  +P L+ +AKHG G D++DI AA    V VM+A  ANA +VAEH  AL+ ++ R +  
Sbjct: 63  IEASPRLKAVAKHGVGYDTIDIQAAAEKGVPVMIALGANAQSVAEHAFALMFSVARQIAW 122

Query: 126 LNTRTRTGAWDRA 138
           L+ RTR G WD+A
Sbjct: 123 LDARTRQGHWDKA 135


>gb|EGH79909.1| D-3-phosphoglycerate dehydrogenase [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 272

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 76/133 (57%), Gaps = 1/133 (0%)

Query: 6   RVLVTGDSLAPAAVNVLSEIGADVVLMHDAVTPERLAHEMARAPTQAILMRGNPVFSAAT 65
           ++L+TG +LA  A++  +++G  +      +  E L   +      AI++R   + +   
Sbjct: 4   KILLTGPALAHDAMSYANDLGIQIFPSTPYLPAEELTSLIRDVQPDAIIVRQGKL-TREM 62

Query: 66  IAGNPHLRVIAKHGAGVDSVDIDAATASRVLVMVAGDANAPAVAEHTIALILALGRDVVS 125
           I  +P L+ +AKHG G D++DI AA    V VM+A  ANA +VAEH  AL+ ++ R +  
Sbjct: 63  IEASPRLKAVAKHGVGYDTIDIQAAAEKGVPVMIALGANAQSVAEHAFALMFSVARQIAW 122

Query: 126 LNTRTRTGAWDRA 138
           L+ RTR G WD+A
Sbjct: 123 LDARTRQGHWDKA 135


>gb|EGH55417.1| D-3-phosphoglycerate dehydrogenase [Pseudomonas syringae Cit 7]
          Length = 325

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 75/133 (56%), Gaps = 1/133 (0%)

Query: 6   RVLVTGDSLAPAAVNVLSEIGADVVLMHDAVTPERLAHEMARAPTQAILMRGNPVFSAAT 65
           ++L+TG +LA  A++  +++G  +      +  E L   +      AI++R     +   
Sbjct: 4   KILLTGPALAHNAMSYANDLGIQIFPTTPYLPAEELTSLIRDVQPDAIIVRQGK-LTREM 62

Query: 66  IAGNPHLRVIAKHGAGVDSVDIDAATASRVLVMVAGDANAPAVAEHTIALILALGRDVVS 125
           I  +P L+ +AKHG G D++DI AA    V VM+A  ANA +VAEH  AL+ ++ R +  
Sbjct: 63  IEASPRLKAVAKHGVGYDTIDIQAAAEKGVPVMIALGANAQSVAEHAFALMFSVARQIAW 122

Query: 126 LNTRTRTGAWDRA 138
           L+ RTR G WD+A
Sbjct: 123 LDARTRQGHWDKA 135


>gb|EGH32793.1| D-3-phosphoglycerate dehydrogenase [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 325

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 76/133 (57%), Gaps = 1/133 (0%)

Query: 6   RVLVTGDSLAPAAVNVLSEIGADVVLMHDAVTPERLAHEMARAPTQAILMRGNPVFSAAT 65
           ++L+TG +LA  A++  +++G  +      +  E L   +      AI++R   + +   
Sbjct: 4   KILLTGPALAHDAMSYANDLGIQIFPSTPYLPAEELTSLIRDVQPDAIIVRQGKL-TREM 62

Query: 66  IAGNPHLRVIAKHGAGVDSVDIDAATASRVLVMVAGDANAPAVAEHTIALILALGRDVVS 125
           I  +P L+ +AKHG G D++DI AA    V VM+A  ANA +VAEH  AL+ ++ R +  
Sbjct: 63  IEASPRLKAVAKHGVGYDTIDIQAAAEKGVPVMIALGANAQSVAEHAFALMFSVARQIAW 122

Query: 126 LNTRTRTGAWDRA 138
           L+ RTR G WD+A
Sbjct: 123 LDARTRQGHWDKA 135