BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0041.0046.p         (116 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_772520.1| hypothetical protein bll5880 [Bradyrhizobium ja...   191   4e-47
ref|NP_769232.1| hypothetical protein blr2592 [Bradyrhizobium ja...   152   2e-35
ref|YP_001207350.1| hypothetical protein BRADO5457 [Bradyrhizobi...   136   8e-31
ref|YP_001240909.1| hypothetical protein BBta_4999 [Bradyrhizobi...   136   1e-30
ref|YP_001241785.1| hypothetical protein BBta_5939 [Bradyrhizobi...   134   3e-30

>ref|NP_772520.1| hypothetical protein bll5880 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC51145.1| bll5880 [Bradyrhizobium japonicum USDA 110]
          Length = 184

 Score =  191 bits (484), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 93/111 (83%), Positives = 99/111 (89%), Gaps = 1/111 (0%)

Query: 7   AALLLGTICL-ASPALARDDGRYANSPLKPWFESLRSGYGQCCSDADGYVVADPDWESDH 65
           AA  LG + L A+ ALARDDGRYANSPLKPWFESLRS YGQCCSDADGYVVAD DWESD 
Sbjct: 74  AAAPLGLMALLATSALARDDGRYANSPLKPWFESLRSEYGQCCSDADGYVVADVDWESDK 133

Query: 66  GHYRVLIDNEWVVVPNEAVITEPNKVGRTMVWKHYIDGHPRVRCFMPGSMT 116
           G YRV +D+EWVVVP+ AVITEPNK+GRTMVWKHYIDGHPRVRCFMPGSMT
Sbjct: 134 GRYRVHLDDEWVVVPDGAVITEPNKIGRTMVWKHYIDGHPRVRCFMPGSMT 184


>ref|NP_769232.1| hypothetical protein blr2592 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC47857.1| blr2592 [Bradyrhizobium japonicum USDA 110]
          Length = 174

 Score =  152 bits (384), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 73/116 (62%), Positives = 86/116 (74%), Gaps = 1/116 (0%)

Query: 1   MHVITRAALLLGTICL-ASPALARDDGRYANSPLKPWFESLRSGYGQCCSDADGYVVADP 59
           + +  R ALL+  + L A  AL RDDGRYA+SPLKPWF+SLRS  G CCSDADG+ V+DP
Sbjct: 58  LKLSLRCALLVAPLVLSAGSALGRDDGRYADSPLKPWFDSLRSHLGPCCSDADGFAVSDP 117

Query: 60  DWESDHGHYRVLIDNEWVVVPNEAVITEPNKVGRTMVWKHYIDGHPRVRCFMPGSM 115
           DWES  GHYRV +D +WV VP+EAVITEPN+ GRTMVW         +RCFMPGSM
Sbjct: 118 DWESHDGHYRVRLDGQWVDVPDEAVITEPNRAGRTMVWPVKTAFGISIRCFMPGSM 173


>ref|YP_001207350.1| hypothetical protein BRADO5457 [Bradyrhizobium sp. ORS 278]
 emb|CAL79133.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278]
          Length = 118

 Score =  136 bits (343), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 61/97 (62%), Positives = 76/97 (78%)

Query: 20  ALARDDGRYANSPLKPWFESLRSGYGQCCSDADGYVVADPDWESDHGHYRVLIDNEWVVV 79
           A+ARDDGRY NSPLK WF+SL+SG G CCSDADG+ V+DPDW+    HYRV +D EW+VV
Sbjct: 22  AVARDDGRYTNSPLKGWFDSLKSGRGPCCSDADGFAVSDPDWDLQGTHYRVRLDGEWIVV 81

Query: 80  PNEAVITEPNKVGRTMVWKHYIDGHPRVRCFMPGSMT 116
           P++AVITEPN+ GRTMVW         +RCFMPG+++
Sbjct: 82  PDDAVITEPNRAGRTMVWPVKGSLGTSIRCFMPGNLS 118


>ref|YP_001240909.1| hypothetical protein BBta_4999 [Bradyrhizobium sp. BTAi1]
 gb|ABQ37003.1| putative exported protein of unknown function [Bradyrhizobium sp.
           BTAi1]
          Length = 153

 Score =  136 bits (342), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 72/115 (62%), Positives = 83/115 (72%), Gaps = 4/115 (3%)

Query: 4   ITRAALLLGTICLASPALARDDGRYANSP--LKPWFESLRSGYGQCCSDADGYVVADPDW 61
           +T AALL+     A P LARD G+YANS   LK WF+ LRSG G CCSDADG  V+D DW
Sbjct: 41  MTGAALLIA--LSAPPGLARDRGQYANSSPELKAWFDGLRSGKGPCCSDADGSAVSDVDW 98

Query: 62  ESDHGHYRVLIDNEWVVVPNEAVITEPNKVGRTMVWKHYIDGHPRVRCFMPGSMT 116
           ES +GHYRV I+ EW+ VP+EAVITEPN+VGRTMVW         +RCFMPGSMT
Sbjct: 99  ESRNGHYRVRIEGEWLDVPDEAVITEPNRVGRTMVWPMRGYQGLSIRCFMPGSMT 153


>ref|YP_001241785.1| hypothetical protein BBta_5939 [Bradyrhizobium sp. BTAi1]
 gb|ABQ37879.1| putative exported protein of unknown function [Bradyrhizobium sp.
           BTAi1]
          Length = 118

 Score =  134 bits (338), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 60/97 (61%), Positives = 76/97 (78%)

Query: 20  ALARDDGRYANSPLKPWFESLRSGYGQCCSDADGYVVADPDWESDHGHYRVLIDNEWVVV 79
           A+ARDDGR+ANSPLK WF+SL+SG G CCSDADG  ++DPDW+    HYRV +D EW+VV
Sbjct: 22  AVARDDGRFANSPLKGWFDSLKSGRGPCCSDADGLALSDPDWDLQGTHYRVRLDGEWIVV 81

Query: 80  PNEAVITEPNKVGRTMVWKHYIDGHPRVRCFMPGSMT 116
           P++AVITEPN+ GRTMVW         +RCFMPG+++
Sbjct: 82  PDDAVITEPNRAGRTMVWPIKGTLGTSIRCFMPGNLS 118