BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0041.0045.p (289 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004284188.1| LysR family transcriptional regulator [Acidi... 384 e-105 ref|NP_102080.1| transcriptional regulator [Mesorhizobium loti M... 367 1e-99 ref|ZP_06839667.1| transcriptional regulator, LysR family [Burkh... 313 2e-83 ref|YP_001887867.1| LysR family transcriptional regulator [Burkh... 310 2e-82 ref|ZP_03267207.1| transcriptional regulator, LysR family [Burkh... 292 4e-77 >ref|YP_004284188.1| LysR family transcriptional regulator [Acidiphilium multivorum AIU301] ref|ZP_08634880.1| Transcriptional regulator [Acidiphilium sp. PM] dbj|BAJ81306.1| LysR family transcriptional regulator [Acidiphilium multivorum AIU301] gb|EGO93328.1| Transcriptional regulator [Acidiphilium sp. PM] Length = 299 Score = 384 bits (986), Expect = e-105, Method: Compositional matrix adjust. Identities = 210/299 (70%), Positives = 248/299 (82%), Gaps = 10/299 (3%) Query: 1 MDLQALADFNLVAAHGGFGRAS---------FFFXVAELEQSLGVRLIERGSQSLRLTDE 51 MDLQAL+DFNLVA HGG GRAS VAELEQ+LGVRLIERGSQSLRLT+E Sbjct: 1 MDLQALSDFNLVATHGGIGRASRASGRSKATLSRKVAELEQNLGVRLIERGSQSLRLTEE 60 Query: 52 GRALHERTSGPLSDIAEAGEAVVLGASTPRGRLRVSAPVLLAHVAFGRIGARFAHAFPDV 111 GRALHERT GPL +IAEA EAVVLGASTPRGRLRVS PV++AH+AFGRIGARFA +PDV Sbjct: 61 GRALHERTCGPLDEIAEAREAVVLGASTPRGRLRVSIPVVIAHMAFGRIGARFALTYPDV 120 Query: 112 QLEIVAEDRLVDPVEDGYDLVIRINPSPDERLVGRRFLHDELLVVAHPDQQRPTASAHDP 171 QLEIVAEDR VDPVED YDLVIR++P+PD+RLVGRRFL+DE L+VA PD R T+ + Sbjct: 121 QLEIVAEDRKVDPVEDDYDLVIRVDPAPDDRLVGRRFLNDERLIVAPPDLPRATSHSAAM 180 Query: 172 DGVSVDAVVMSPTPPDTVWRIR-HEHDGLMLKPRPMLRLSSMLMMRDAVLAGAGAALLPK 230 ++V AVV++ TPPD WR+R ++ + +KP P+LRLSS+LM+RDAVLAGAGAA+LPK Sbjct: 181 GELAVRAVVLTTTPPDITWRLRANQGSDIFIKPEPVLRLSSLLMVRDAVLAGAGAAVLPK 240 Query: 231 LLVDDDIAAGRLAYWGTDTRPPVEIWALQSSRRLVGAKVRAFLDVVEQAFPNRVFVPPA 289 +LV DD+AAGRL WG + PPVE+WALQSSRRLVGAKVRAFL+VVE++FP+R F+PPA Sbjct: 241 MLVADDVAAGRLVLWGPVSEPPVELWALQSSRRLVGAKVRAFLNVVEKSFPDRAFLPPA 299 >ref|NP_102080.1| transcriptional regulator [Mesorhizobium loti MAFF303099] dbj|BAB47866.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 298 Score = 367 bits (942), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 210/298 (70%), Positives = 241/298 (80%), Gaps = 15/298 (5%) Query: 1 MDLQALADFNLVAAHGGFGRA---------SFFFXVAELEQSLGVRLIERGSQSLRLTDE 51 MDL+ALADFNLVAAHGGFGRA + V ELE SLGVRLIERGSQSLRLTDE Sbjct: 1 MDLEALADFNLVAAHGGFGRAGRISGRSKATLSRHVNELEHSLGVRLIERGSQSLRLTDE 60 Query: 52 GRALHERTSGPLSDIAEAGEAVVLGASTPRGRLRVSAPVLLAHVAFGRIGARFAHAFPDV 111 GRAL+ERT G +++IAEAGEA+VLGASTPRGRLRVSAPV+ AHVA IG RFA A+P+V Sbjct: 61 GRALYERTDGLMAEIAEAGEAIVLGASTPRGRLRVSAPVVFAHVALPMIGTRFALAYPEV 120 Query: 112 QLEIVAEDRLVDPVEDGYDLVIRINPSPDERLVGRRFLHDELLVVAHPDQQRPTASAHDP 171 +LEIVAEDR VDPVEDGYDLVIRI+PSPDERL+GRRFL+DE L+VA PD RP + P Sbjct: 121 KLEIVAEDRKVDPVEDGYDLVIRIDPSPDERLIGRRFLNDERLIVALPDMPRPQPA---P 177 Query: 172 DG--VSVDAVVMSPTPPDTVWRIRHE-HDGLMLKPRPMLRLSSMLMMRDAVLAGAGAALL 228 G V AV++S T + VWR++ + D ++LKP P+LR SS+LM+RDAVLAGAGAALL Sbjct: 178 GGGPSPVKAVLLSATSLNVVWRLKFDFEDEILLKPEPILRFSSLLMVRDAVLAGAGAALL 237 Query: 229 PKLLVDDDIAAGRLAYWGTDTRPPVEIWALQSSRRLVGAKVRAFLDVVEQAFPNRVFV 286 PKLLV DI AGRL WGTD PPVEIWALQSSRRL+GAKVRAFLDV+E+AFP +VFV Sbjct: 238 PKLLVAGDIEAGRLVCWGTDAGPPVEIWALQSSRRLIGAKVRAFLDVMERAFPTKVFV 295 >ref|ZP_06839667.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] gb|EFG72497.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1] Length = 296 Score = 313 bits (803), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 171/293 (58%), Positives = 211/293 (72%), Gaps = 12/293 (4%) Query: 1 MDLQALADFNLVAAHGGFG---------RASFFFXVAELEQSLGVRLIERGSQSLRLTDE 51 MDL +LADFN VA HGGFG +A+ VAELE++LGVRLIERGS+ LRLT+E Sbjct: 1 MDLTSLADFNAVALHGGFGPASRALDRPKATLSRRVAELEEALGVRLIERGSRRLRLTEE 60 Query: 52 GRALHERTSGPLSDIAEAGEAVVLGASTPRGRLRVSAPVLLAHVAFGRIGARFAHAFPDV 111 G LHERT G +++I EAGE V A PRGRLR+SAPV+ AHV GRI ARFA A+P V Sbjct: 61 GLVLHERTRGLMAEIQEAGEVVASRAPVPRGRLRISAPVVFAHVVLGRIAARFALAYPQV 120 Query: 112 QLEIVAEDRLVDPVEDGYDLVIRINPSPDERLVGRRFLHDELLVVAHPDQQRPTASAHDP 171 +LE++AEDR+VDPVEDGYDLVIRINPS DE+LVGRR DE LVVA P P++ A Sbjct: 121 ELEVIAEDRVVDPVEDGYDLVIRINPSRDEQLVGRRIFGDERLVVAAPAMSMPSSFAGGA 180 Query: 172 DGVSVDAVVMSPTPPDTVWRIRHEHDGLM-LKPRPMLRLSSMLMMRDAVLAGAGAALLPK 230 + V A+V + P +W + H GL L P+P+LR SS+LM+RDAV+ G GAALLP+ Sbjct: 181 AALPVPAIVRASELPGEIWTV-HTPGGLQSLAPQPVLRFSSLLMVRDAVVDGVGAALLPR 239 Query: 231 LLVDDDIAAGRLAYWGTDTRPPVEIWALQSSRRLVGAKVRAFLDVVEQAFPNR 283 LLV+ D++AGRL WG PPVEIWAL +SRRL+ AKVRAF++++ Q P R Sbjct: 240 LLVEQDVSAGRLVCWGVADGPPVEIWALYNSRRLLSAKVRAFMNLL-QDLPGR 291 >ref|YP_001887867.1| LysR family transcriptional regulator [Burkholderia phytofirmans PsJN] gb|ACD18497.1| transcriptional regulator, LysR family [Burkholderia phytofirmans PsJN] Length = 294 Score = 310 bits (794), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 174/292 (59%), Positives = 213/292 (72%), Gaps = 10/292 (3%) Query: 1 MDLQALADFNLVAAHGGFG---------RASFFFXVAELEQSLGVRLIERGSQSLRLTDE 51 MDL +LADFN VA HGGFG +A+ VAELE++LGVRLIERGS++LRLT+E Sbjct: 1 MDLTSLADFNAVALHGGFGPASRALDRPKATLSRRVAELEETLGVRLIERGSRTLRLTEE 60 Query: 52 GRALHERTSGPLSDIAEAGEAVVLGASTPRGRLRVSAPVLLAHVAFGRIGARFAHAFPDV 111 G ALHERT G +++I EAGEAV A PRGRLR+SAPV+ AHV RI RFA A+P V Sbjct: 61 GLALHERTRGLMAEIQEAGEAVASRAPVPRGRLRISAPVVFAHVVLVRIATRFALAYPQV 120 Query: 112 QLEIVAEDRLVDPVEDGYDLVIRINPSPDERLVGRRFLHDELLVVAHPDQQRPTASAHDP 171 +LE+VAEDR+VDPVEDGYDLVIRINP+PD++LVGRR L DELL+VA P P +A D Sbjct: 121 ELEVVAEDRVVDPVEDGYDLVIRINPAPDQQLVGRRILGDELLLVAAPTMSIPPWAAGDA 180 Query: 172 DGVSVDAVVMSPTPPDTVWRIRHEHDGLMLKPRPMLRLSSMLMMRDAVLAGAGAALLPKL 231 ++V AVV + +W +R E L P P+LRLSS+LM+R+AVL G GAA+LPKL Sbjct: 181 AALAVPAVVSVAASANAIWSVRTESGPRSLAPMPVLRLSSLLMVRNAVLDGVGAAMLPKL 240 Query: 232 LVDDDIAAGRLAYWGTDTRPPVEIWALQSSRRLVGAKVRAFLDVVEQAFPNR 283 LV+ D+AAGRL WG PPVEIWAL +SRRL+ AKVRAF+D++ P R Sbjct: 241 LVEQDVAAGRLVCWGVADGPPVEIWALYNSRRLLSAKVRAFMDLLRD-LPGR 291 >ref|ZP_03267207.1| transcriptional regulator, LysR family [Burkholderia sp. H160] gb|EEA01234.1| transcriptional regulator, LysR family [Burkholderia sp. H160] Length = 293 Score = 292 bits (748), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 160/293 (54%), Positives = 201/293 (68%), Gaps = 11/293 (3%) Query: 1 MDLQALADFNLVAAHGGFG---------RASFFFXVAELEQSLGVRLIERGSQSLRLTDE 51 M+L AL+DFN VA HGGFG +A+ VAELE LGVRLIERGS+ +RLT++ Sbjct: 1 MNLMALSDFNAVATHGGFGPAGRALDRPKATLSRHVAELEDELGVRLIERGSRRMRLTED 60 Query: 52 GRALHERTSGPLSDIAEAGEAVVLGASTPRGRLRVSAPVLLAHVAFGRIGARFAHAFPDV 111 G ALHERT G L+++ EAG+AV A RGRLR+SAP++ AHV RI ARFA A+P V Sbjct: 61 GIALHERTRGLLAELEEAGDAVASRAPVARGRLRISAPIVFAHVVLCRIAARFALAYPQV 120 Query: 112 QLEIVAEDRLVDPVEDGYDLVIRINPSPDERLVGRRFLHDELLVVAHPDQQRPTASAHDP 171 ++EIVAEDR+VDPVEDGYDLVIR++P D+ LVGRR L DE +VA P P D Sbjct: 121 EVEIVAEDRVVDPVEDGYDLVIRVDPPRDDLLVGRRILDDERWLVATPAVSVPAMRKQDV 180 Query: 172 DGVSVDAVVMSPTPPDTVWRIRHEHDGL-MLKPRPMLRLSSMLMMRDAVLAGAGAALLPK 230 V AV+ + P +W +R + G +P P+LRLSS+LM+R+AVLAG G A+LP+ Sbjct: 181 SPFPVPAVLSAAAPSGAIWSVRTKSKGTKTFEPMPVLRLSSLLMVREAVLAGVGPAMLPR 240 Query: 231 LLVDDDIAAGRLAYWGTDTRPPVEIWALQSSRRLVGAKVRAFLDVVEQAFPNR 283 LLV++D+ AGRL WG + PVEIWAL SRRL+ KVRAFLD + Q P R Sbjct: 241 LLVEEDVMAGRLVCWGKEEGSPVEIWALYHSRRLLSVKVRAFLDAL-QDLPAR 292