BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0041.0044.p (292 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08634881.1| hypothetical protein APM_0504 [Acidiphilium s... 474 e-132 ref|YP_004284187.1| hypothetical protein ACMV_19580 [Acidiphiliu... 468 e-130 ref|NP_102081.1| hypothetical protein mlr0239 [Mesorhizobium lot... 465 e-129 ref|ZP_06839666.1| NmrA family protein [Burkholderia sp. Ch1-1] ... 422 e-116 ref|YP_001887866.1| NmrA family protein [Burkholderia phytofirma... 415 e-114 >ref|ZP_08634881.1| hypothetical protein APM_0504 [Acidiphilium sp. PM] gb|EGO93329.1| hypothetical protein APM_0504 [Acidiphilium sp. PM] Length = 292 Score = 474 bits (1219), Expect = e-132, Method: Compositional matrix adjust. Identities = 233/292 (79%), Positives = 254/292 (86%) Query: 1 MAILVTGSTGTIGTQVLNHLAGQGVEVRALTRSPGKAQFPQHVTAVRGDLADVDSVRAAL 60 M+ILVTGSTGTIG QVL HL +G ++RALTRSPGKA P VT VRGDLAD+DSVRAAL Sbjct: 1 MSILVTGSTGTIGAQVLAHLHERGADIRALTRSPGKASLPSGVTPVRGDLADIDSVRAAL 60 Query: 61 IGVSTLFLLVPNAADELTQAMLTLTAAREAGVKGIVYLSVFKGEAYADVPHFAGKHTVER 120 GVSTLFLLVPN ADELT+AMLTLT AREAGVKGIVYLSVFKGE YADVPHFAGKHT+ER Sbjct: 61 EGVSTLFLLVPNVADELTEAMLTLTVAREAGVKGIVYLSVFKGETYADVPHFAGKHTIER 120 Query: 121 MIEALDLPATILRPAYFIQNDLRLKDPLLNFGAYGMPIGAKGISMVDIRDIGEAAAIELL 180 MIEALDLPATILRPAYFIQNDLR KDPLL FG Y PIG+KG+SMVDIRDIGEAAAIELL Sbjct: 121 MIEALDLPATILRPAYFIQNDLRQKDPLLKFGTYAAPIGSKGVSMVDIRDIGEAAAIELL 180 Query: 181 RRERASAPLGRETYALVGPDVVTGAGAAAIWRDELGRAVSYGGDDLAVMEQRFKAAMPAW 240 RR++A AP+GRE Y LVGPD +TG G AAIW D LGRA+ YGGDDL VMEQR KA +PAW Sbjct: 181 RRDQAPAPIGREIYELVGPDSLTGEGLAAIWSDALGRAIRYGGDDLTVMEQRMKAMLPAW 240 Query: 241 LALDMRLMFGRYQSDGAVATADELARLTKLLGRAPRAYRDFARDAATQWRKG 292 ALD+RLMFGRYQ+DGA ATA ++A L KLLGRAPR+Y DFA+DAATQW KG Sbjct: 241 HALDLRLMFGRYQTDGATATAADIAHLAKLLGRAPRSYADFAKDAATQWAKG 292 >ref|YP_004284187.1| hypothetical protein ACMV_19580 [Acidiphilium multivorum AIU301] dbj|BAJ81305.1| hypothetical protein ACMV_19580 [Acidiphilium multivorum AIU301] Length = 292 Score = 468 bits (1205), Expect = e-130, Method: Compositional matrix adjust. Identities = 232/292 (79%), Positives = 253/292 (86%) Query: 1 MAILVTGSTGTIGTQVLNHLAGQGVEVRALTRSPGKAQFPQHVTAVRGDLADVDSVRAAL 60 M+ILVTGSTGTIG QVL +L +G ++RALTRSPGKA P VT VRGDLAD+DSVRAAL Sbjct: 1 MSILVTGSTGTIGAQVLAYLQERGADIRALTRSPGKASLPSGVTPVRGDLADIDSVRAAL 60 Query: 61 IGVSTLFLLVPNAADELTQAMLTLTAAREAGVKGIVYLSVFKGEAYADVPHFAGKHTVER 120 GVSTLFLLVPN ADELT+AMLTLT AREAGVKGIVYLSVFKGE YADVPHFAGKHTVER Sbjct: 61 EGVSTLFLLVPNVADELTEAMLTLTVAREAGVKGIVYLSVFKGETYADVPHFAGKHTVER 120 Query: 121 MIEALDLPATILRPAYFIQNDLRLKDPLLNFGAYGMPIGAKGISMVDIRDIGEAAAIELL 180 MIEALDLPATILRPAYFIQNDLR KDPLL FGAY PIG+KG+SMVDIRDIGEAAAIELL Sbjct: 121 MIEALDLPATILRPAYFIQNDLRQKDPLLKFGAYAAPIGSKGVSMVDIRDIGEAAAIELL 180 Query: 181 RRERASAPLGRETYALVGPDVVTGAGAAAIWRDELGRAVSYGGDDLAVMEQRFKAAMPAW 240 RR++A AP+GRE Y LVG D +TG G AAIW D LGRA+ YGGDDL VMEQR KA +PAW Sbjct: 181 RRDQAPAPIGREIYELVGSDSLTGEGLAAIWSDALGRAIRYGGDDLTVMEQRMKAMLPAW 240 Query: 241 LALDMRLMFGRYQSDGAVATADELARLTKLLGRAPRAYRDFARDAATQWRKG 292 ALD+RLMFGRYQ+DGA ATA ++A L KLLGRAPR+Y DFA+DAA QW KG Sbjct: 241 HALDLRLMFGRYQTDGATATAADIAHLAKLLGRAPRSYADFAKDAAAQWAKG 292 >ref|NP_102081.1| hypothetical protein mlr0239 [Mesorhizobium loti MAFF303099] dbj|BAB47867.1| mlr0239 [Mesorhizobium loti MAFF303099] Length = 292 Score = 465 bits (1196), Expect = e-129, Method: Compositional matrix adjust. Identities = 234/292 (80%), Positives = 251/292 (85%) Query: 1 MAILVTGSTGTIGTQVLNHLAGQGVEVRALTRSPGKAQFPQHVTAVRGDLADVDSVRAAL 60 MAILVTGSTGTIG+QVL HL G VEVRALTRSP AQFP VTAVRGDLAD DSVRAAL Sbjct: 1 MAILVTGSTGTIGSQVLAHLQGHNVEVRALTRSPETAQFPAGVTAVRGDLADPDSVRAAL 60 Query: 61 IGVSTLFLLVPNAADELTQAMLTLTAAREAGVKGIVYLSVFKGEAYADVPHFAGKHTVER 120 GVSTLFLL PN ADELTQAMLTLT AREAGVKGIVYLSVF G+ YADVPHFAGK+TVER Sbjct: 61 RGVSTLFLLAPNVADELTQAMLTLTVAREAGVKGIVYLSVFGGDGYADVPHFAGKYTVER 120 Query: 121 MIEALDLPATILRPAYFIQNDLRLKDPLLNFGAYGMPIGAKGISMVDIRDIGEAAAIELL 180 MIEALDLPATILRPAYFIQNDLR KD LL G YG PIG KG+SMVDIRDIGEAAAIELL Sbjct: 121 MIEALDLPATILRPAYFIQNDLRQKDGLLKTGVYGSPIGKKGVSMVDIRDIGEAAAIELL 180 Query: 181 RRERASAPLGRETYALVGPDVVTGAGAAAIWRDELGRAVSYGGDDLAVMEQRFKAAMPAW 240 RRE+A+ PLGRETYALVGPD +TG G A IWR+ LGRA+ +GGDDL VMEQR K +PAW Sbjct: 181 RREQAATPLGRETYALVGPDSLTGEGIATIWREALGRAIRHGGDDLVVMEQRTKTMLPAW 240 Query: 241 LALDMRLMFGRYQSDGAVATADELARLTKLLGRAPRAYRDFARDAATQWRKG 292 ALD+RLMF RYQ++GAVATAD++ RLTKLLG APR+Y FARDAA QW KG Sbjct: 241 HALDLRLMFSRYQTEGAVATADDIERLTKLLGHAPRSYTAFARDAAAQWTKG 292 >ref|ZP_06839666.1| NmrA family protein [Burkholderia sp. Ch1-1] gb|EFG72496.1| NmrA family protein [Burkholderia sp. Ch1-1] Length = 292 Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust. Identities = 208/292 (71%), Positives = 236/292 (80%) Query: 1 MAILVTGSTGTIGTQVLNHLAGQGVEVRALTRSPGKAQFPQHVTAVRGDLADVDSVRAAL 60 MAILVTGSTG +G QVL HLAG G +VRALTRSP KAQFP VTAV+GDL+DVD +R A+ Sbjct: 1 MAILVTGSTGVVGKQVLEHLAGSGAQVRALTRSPEKAQFPDGVTAVQGDLSDVDGLRRAM 60 Query: 61 IGVSTLFLLVPNAADELTQAMLTLTAAREAGVKGIVYLSVFKGEAYADVPHFAGKHTVER 120 GVSTLFLL PNAADELTQA+ TL+ REAGVKG+VYLSVFKG Y DVPHF GK+TVER Sbjct: 61 NGVSTLFLLAPNAADELTQALQTLSVTREAGVKGVVYLSVFKGADYVDVPHFTGKYTVER 120 Query: 121 MIEALDLPATILRPAYFIQNDLRLKDPLLNFGAYGMPIGAKGISMVDIRDIGEAAAIELL 180 MIE DLPAT+LRPAYF+QND+R K+PLL GAYGMPIGAKGISMVD+RDIGEAAA ELL Sbjct: 121 MIEHCDLPATVLRPAYFMQNDVRQKEPLLTHGAYGMPIGAKGISMVDVRDIGEAAARELL 180 Query: 181 RRERASAPLGRETYALVGPDVVTGAGAAAIWRDELGRAVSYGGDDLAVMEQRFKAAMPAW 240 RRERA+ L RETYALVGPD +T A+IW + LGRAV YGGDDL ++EQR KAA P W Sbjct: 181 RRERAADRLPRETYALVGPDAITSQSVASIWAEALGRAVRYGGDDLDLLEQRLKAAAPGW 240 Query: 241 LALDMRLMFGRYQSDGAVATADELARLTKLLGRAPRAYRDFARDAATQWRKG 292 LA D+RLM RYQ DGAVA+ E+ L LL R PR+YRDFA++ A W +G Sbjct: 241 LAYDIRLMMSRYQQDGAVASRAEIDHLAALLDRQPRSYRDFAKETAAVWAQG 292 >ref|YP_001887866.1| NmrA family protein [Burkholderia phytofirmans PsJN] gb|ACD18496.1| NmrA family protein [Burkholderia phytofirmans PsJN] Length = 293 Score = 415 bits (1067), Expect = e-114, Method: Compositional matrix adjust. Identities = 205/293 (69%), Positives = 232/293 (79%), Gaps = 1/293 (0%) Query: 1 MAILVTGSTGTIGTQVLNHL-AGQGVEVRALTRSPGKAQFPQHVTAVRGDLADVDSVRAA 59 MAILVTGSTG +G QVL HL A G +VRALTRSP KAQFP VTAV+GDL+DVD +R A Sbjct: 1 MAILVTGSTGVVGKQVLEHLLAAGGAQVRALTRSPEKAQFPDGVTAVQGDLSDVDGLRRA 60 Query: 60 LIGVSTLFLLVPNAADELTQAMLTLTAAREAGVKGIVYLSVFKGEAYADVPHFAGKHTVE 119 + GVSTLFLL PNA DELTQA+ TL+ AREAGVKG+VYLSVFKG Y DVPHF GKHTVE Sbjct: 61 MNGVSTLFLLAPNAPDELTQALQTLSVAREAGVKGVVYLSVFKGAEYVDVPHFTGKHTVE 120 Query: 120 RMIEALDLPATILRPAYFIQNDLRLKDPLLNFGAYGMPIGAKGISMVDIRDIGEAAAIEL 179 RMIE DLPAT+LRPAYFIQND+R K+PLL G YGMPIGAKGISMVD+RDIGEAAA EL Sbjct: 121 RMIEHCDLPATVLRPAYFIQNDVRQKEPLLTHGVYGMPIGAKGISMVDVRDIGEAAAREL 180 Query: 180 LRRERASAPLGRETYALVGPDVVTGAGAAAIWRDELGRAVSYGGDDLAVMEQRFKAAMPA 239 LRRER++ L RETY LVGPD +T A+IW + LGR+V YGGDDL V+EQR KAA P Sbjct: 181 LRRERSATRLPRETYELVGPDAITSETVASIWAEALGRSVRYGGDDLDVLEQRLKAAAPG 240 Query: 240 WLALDMRLMFGRYQSDGAVATADELARLTKLLGRAPRAYRDFARDAATQWRKG 292 WL DMRLM RYQ DGAVA+ ++ L LLGR PR+YR+FA + A W+ G Sbjct: 241 WLVYDMRLMMSRYQQDGAVASQAQIDHLATLLGRQPRSYREFAAEMAAAWKNG 293