BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0041.0039.p (209 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002008387.1| transcriptional regulator IclR family [Cupri... 130 1e-28 ref|XP_002535083.1| Transcriptional regulator kdgR, putative [Ri... 123 1e-26 ref|YP_004125189.1| regulatory protein iclr [Alicycliphilus deni... 120 1e-25 ref|YP_996373.1| regulatory protein IclR [Verminephrobacter eise... 118 6e-25 ref|YP_001755921.1| IclR family transcriptional regulator [Methy... 115 4e-24 >ref|YP_002008387.1| transcriptional regulator IclR family [Cupriavidus taiwanensis LMG 19424] emb|CAQ72333.1| putative transcriptional regulator, IclR [Cupriavidus taiwanensis LMG 19424] Length = 245 Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 76/194 (39%), Positives = 111/194 (57%), Gaps = 2/194 (1%) Query: 1 VLLRCLVELNYLEYERKTRLFIPSYRVNLLGDWIRRSPFRDTKLTDLMEELWTATGGETV 60 +LLR +V Y+E++ + R + PS RV L W R + D M L + TG ETV Sbjct: 44 MLLRTMVARGYMEFDAQLRTYCPSVRVAFLCGWTTRRQGAGASVHDAMRRLSSETG-ETV 102 Query: 61 MLGQQAGAAGMQYLHVVPGGSQLQYTAQAGQIRPMVRTALGHVLLSQMPNTKIRGIIRRN 120 +LG+Q+G +QYL V+ L+ + +G +RPM RTA+G +L+S+M + +I ++RR Sbjct: 103 LLGRQSGNM-LQYLSVIESSHALRLSVASGIVRPMHRTAIGIMLMSRMDDEQIGRLLRRY 161 Query: 121 NAEEPSQSARVRESAFLEEVERIRRRGYSESGGRTTPGASTIGMLVPLPKRRAPLAIGIG 180 NAE + R + L EVE RR+GY ES TPGA I L+ P R L IG G Sbjct: 162 NAEADTGEPPARPAEILREVELARRQGYYESASLATPGAGVIATLMATPIRGQWLGIGTG 221 Query: 181 GPIERIAAKRAHII 194 GP+ R+ A+R ++ Sbjct: 222 GPVARLHARRKKLL 235 >ref|XP_002535083.1| Transcriptional regulator kdgR, putative [Ricinus communis] gb|EEF27298.1| Transcriptional regulator kdgR, putative [Ricinus communis] Length = 255 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 73/202 (36%), Positives = 113/202 (55%), Gaps = 3/202 (1%) Query: 2 LLRCLVELNYLEYERKTRLFIPSYRVNLLGDWIRRSPFRDTKLTDLMEELWTATGGETVM 61 LL+ L ++ +LEY+R R++ P+ +V LLG W+ FR L +M+++ + TG + V Sbjct: 47 LLKALSQMGFLEYDRFLRIYRPTVQVALLGAWVHPYLFRQGHLLPMMDQISSQTG-QLVA 105 Query: 62 LGQQAGAAGMQYLHVVPGGSQLQYTAQAGQIRPMVRTALGHVLLSQMPNTKIRGIIRRNN 121 LG Q G +QY+HV+ + ++ G IRP++R+A G +LLSQ N KI +I R N Sbjct: 106 LGTQVGL-NVQYVHVIQATATMRMHIPQGSIRPLLRSAHGKLLLSQETNEKIEKLIHRIN 164 Query: 122 AEEPSQSARVRESAFLEEVERIRRRGYSESGGRTTPGASTIGMLVPLPKRRAPLAIGIGG 181 AE P + +V+ S L E+E IR +GY+ S TPG + +L+P L +GIGG Sbjct: 165 AEAPPEQ-QVKSSTLLAEIESIRAQGYALSTDVVTPGGGMVAVLLPKLDGGQRLTLGIGG 223 Query: 182 PIERIAAKRAHIIEVMQSRLKE 203 I I V++ + E Sbjct: 224 LTAVIKKNCDDYITVLKQAITE 245 >ref|YP_004125189.1| regulatory protein iclr [Alicycliphilus denitrificans BC] ref|YP_004386422.1| IclR family transcriptional regulator [Alicycliphilus denitrificans K601] gb|ADU98301.1| regulatory protein IclR [Alicycliphilus denitrificans BC] gb|AEB82906.1| transcriptional regulator, IclR family [Alicycliphilus denitrificans K601] Length = 252 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 67/184 (36%), Positives = 109/184 (59%), Gaps = 5/184 (2%) Query: 1 VLLRCLVELNYLEYERKTRLFIPSYRVNLLGDWIRRSPFRDTKLTDLMEELWTATGGETV 60 VLL+ L+ L YL+Y+RK+R + P+ RV LLG WI + + + L+ ++ +L T TV Sbjct: 47 VLLQTLMRLRYLDYDRKSRKYFPTVRVALLGSWITENLYSERSLSKIVNDLHARTSA-TV 105 Query: 61 MLGQQAGAAGMQYLHVVPGG---SQLQYTAQAGQIRPMVRTALGHVLLSQMPNTKIRGII 117 +LG Q +QY++V SQL++ + G +RP+ R+++G +LS P+ ++ ++ Sbjct: 106 ILGLQ-NDIYVQYINVCQTPQRRSQLKWYLKPGSLRPLARSSVGKAVLSSKPDAELIYLL 164 Query: 118 RRNNAEEPSQSARVRESAFLEEVERIRRRGYSESGGRTTPGASTIGMLVPLPKRRAPLAI 177 RR NA E RV E+ LEE++RIR GYS + G P A + L+P ++ +A+ Sbjct: 165 RRINASETRPENRVSEADLLEEMDRIRETGYSLTTGTVNPQAGVVACLIPSHPQQPVMAL 224 Query: 178 GIGG 181 GIG Sbjct: 225 GIGA 228 >ref|YP_996373.1| regulatory protein IclR [Verminephrobacter eiseniae EF01-2] gb|ABM57355.1| regulatory proteins, IclR [Verminephrobacter eiseniae EF01-2] Length = 241 Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 73/196 (37%), Positives = 111/196 (56%), Gaps = 6/196 (3%) Query: 1 VLLRCLVELNYLEYERKTRLFIPSYRVNLLGDWIRRSPFRDTKLTDLMEELWTATGGETV 60 +LL+ LV Y+E++ R + PS R++ LGDW R P R + D M L TG ETV Sbjct: 40 MLLKSLVARGYMEFDAAKREYCPSIRISFLGDWTTRMPDRPEAIQDAMRRLAAETG-ETV 98 Query: 61 MLGQQAGAAGMQYLHVVPGGSQLQYTAQAGQIRPMVRTALGHVLLSQMPNTKIRGIIRRN 120 +LG+Q+G +QYL V+ L+++ G +RP+ R+A+G +L+SQ+ + +I ++RR Sbjct: 99 LLGRQSGLQ-LQYLSVIESQHALRFSPSPGTMRPIHRSAIGILLMSQLEDEQIGLLLRRY 157 Query: 121 NAE--EPSQSARVRESAFLEEVERIRRRGYSESGGRTTPGASTIGMLVPLPKRRAPLAIG 178 NAE A++ E+ L V R +G+ ES T GA I LV R L +G Sbjct: 158 NAEVGRAGHPAKIAET--LRAVALARDQGHYESANLATTGAGVIAALVQTLIRGQRLGLG 215 Query: 179 IGGPIERIAAKRAHII 194 IG PIER+ +R ++ Sbjct: 216 IGAPIERLHRRRKQLL 231 >ref|YP_001755921.1| IclR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gb|ACB25238.1| transcriptional regulator, IclR family [Methylobacterium radiotolerans JCM 2831] Length = 278 Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 74/213 (34%), Positives = 114/213 (53%), Gaps = 8/213 (3%) Query: 1 VLLRCLVELNYLEYERKTRLFIPSYRVNLLGDWIRRSPFRDTKLTDLMEELWTATGGETV 60 VLL+ LV L YL+Y+ +R F+PS RV LLG W+ + P RD L ++E L TGG + Sbjct: 67 VLLKSLVRLGYLDYDPASRSFLPSPRVALLGAWLDKGPVRDGSLVRMLEHLSERTGGTVI 126 Query: 61 MLGQQAGAAGMQYLHVVPGGSQLQYTAQAGQIRPMVRTALGHVLLSQMPNTKIRGIIRRN 120 + + A + QY+HV+ + +++ G R +V +A G LL+ P +I ++RR Sbjct: 127 LAARNAIFS--QYVHVLQARTAMRFHVPPGTRRLVVWSATGTALLADSPEAEIGPLVRRT 184 Query: 121 NAEEPSQSARVRESAFLEEVERIRRRGYSESGGRTTPGASTIGMLVPLPKRRA----PLA 176 NAE P+ + +A L + R+RR G+ S G TPGA +I VPLP+R PLA Sbjct: 185 NAEAPAGQPPIALAAVLANLARLRRDGHFFSRGLVTPGAGSIA--VPLPRRIDSRGRPLA 242 Query: 177 IGIGGPIERIAAKRAHIIEVMQSRLKELTSEAP 209 + + G ++ + A I + + E P Sbjct: 243 VAVSGLLDEFERREAEIAAAIHDAVARFLPEDP 275