BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0041.0036.p (376 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767054.1| 3-isopropylmalate dehydrogenase [Bradyrhizobium... 516 e-144 sp|Q89XA0.2|LEU31_BRAJA RecName: Full=3-isopropylmalate dehydrog... 516 e-144 emb|CAM75046.1| Isocitrate/isopropylmalate dehydrogenase [Magnet... 342 7e-92 ref|YP_423432.1| 3-isopropylmalate dehydrogenase [Magnetospirill... 330 3e-88 ref|ZP_00054663.1| COG0473: Isocitrate/isopropylmalate dehydroge... 326 3e-87 >ref|NP_767054.1| 3-isopropylmalate dehydrogenase [Bradyrhizobium japonicum USDA 110] dbj|BAC45679.1| 3-isopropylmalate dehydrogenase [Bradyrhizobium japonicum USDA 110] Length = 388 Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust. Identities = 248/293 (84%), Positives = 266/293 (90%) Query: 1 MSTQSNMVKVAVVGGEGIGPEVTAQSRRVLDWFAAKRNVPMTLREAQYGLIPYLATGKVL 60 M+T SN + VAVVGGEGIGPEVT QS R+L WF+ +R P+ LREAQYGLIPYLATGKVL Sbjct: 10 MNTLSNTITVAVVGGEGIGPEVTDQSHRILKWFSDRRGAPVILREAQYGLIPYLATGKVL 69 Query: 61 PEDTAEAMDEADAILWGATGGPETTEVPAAARKAGSLLGLRSKYDLYANLRPIVASPALS 120 P+DT EAM+EADAILWGATGGPETTEVP AARKAGSLL LRSKYDLYANLRPIVA+PAL+ Sbjct: 70 PDDTVEAMEEADAILWGATGGPETTEVPPAARKAGSLLSLRSKYDLYANLRPIVANPALA 129 Query: 121 ASAPLKAEVLDGVDFVIIRELTSGIYFGEPRGIETLPDGQRRGFNTEQYTTNQIRRVARS 180 SAPLKA VL VDF+IIRELTSGIYFGEPRGIETLPDGQRRGFNT+QYTT+QIRRVAR+ Sbjct: 130 DSAPLKAAVLKDVDFIIIRELTSGIYFGEPRGIETLPDGQRRGFNTQQYTTSQIRRVART 189 Query: 181 AFELARTRRNKVCSVDKANVLETSVVWREEVIKLHKEEFSDVELTHLYVDNAAMQIVREP 240 AFELARTR+ +VCSVDKANVLETSV+WREEV LH+ EFSDVELTHLYVDNAAMQIVR P Sbjct: 190 AFELARTRKGRVCSVDKANVLETSVLWREEVTALHEAEFSDVELTHLYVDNAAMQIVRAP 249 Query: 241 RQFDVMVTGNIFGDILSDCAAMASGSLGMLPSASLGPVDRFGRRKALYEPVHG 293 QFDVMVT NIFGDILSDCAAMASGSLGMLPS SLGP DR GRRKALYEPVHG Sbjct: 250 SQFDVMVTCNIFGDILSDCAAMASGSLGMLPSVSLGPPDRLGRRKALYEPVHG 302 >sp|Q89XA0.2|LEU31_BRAJA RecName: Full=3-isopropylmalate dehydrogenase 1; AltName: Full=3-IPM-DH 1; AltName: Full=Beta-IPM dehydrogenase 1; Short=IMDH 1 Length = 379 Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust. Identities = 248/293 (84%), Positives = 266/293 (90%) Query: 1 MSTQSNMVKVAVVGGEGIGPEVTAQSRRVLDWFAAKRNVPMTLREAQYGLIPYLATGKVL 60 M+T SN + VAVVGGEGIGPEVT QS R+L WF+ +R P+ LREAQYGLIPYLATGKVL Sbjct: 1 MNTLSNTITVAVVGGEGIGPEVTDQSHRILKWFSDRRGAPVILREAQYGLIPYLATGKVL 60 Query: 61 PEDTAEAMDEADAILWGATGGPETTEVPAAARKAGSLLGLRSKYDLYANLRPIVASPALS 120 P+DT EAM+EADAILWGATGGPETTEVP AARKAGSLL LRSKYDLYANLRPIVA+PAL+ Sbjct: 61 PDDTVEAMEEADAILWGATGGPETTEVPPAARKAGSLLSLRSKYDLYANLRPIVANPALA 120 Query: 121 ASAPLKAEVLDGVDFVIIRELTSGIYFGEPRGIETLPDGQRRGFNTEQYTTNQIRRVARS 180 SAPLKA VL VDF+IIRELTSGIYFGEPRGIETLPDGQRRGFNT+QYTT+QIRRVAR+ Sbjct: 121 DSAPLKAAVLKDVDFIIIRELTSGIYFGEPRGIETLPDGQRRGFNTQQYTTSQIRRVART 180 Query: 181 AFELARTRRNKVCSVDKANVLETSVVWREEVIKLHKEEFSDVELTHLYVDNAAMQIVREP 240 AFELARTR+ +VCSVDKANVLETSV+WREEV LH+ EFSDVELTHLYVDNAAMQIVR P Sbjct: 181 AFELARTRKGRVCSVDKANVLETSVLWREEVTALHEAEFSDVELTHLYVDNAAMQIVRAP 240 Query: 241 RQFDVMVTGNIFGDILSDCAAMASGSLGMLPSASLGPVDRFGRRKALYEPVHG 293 QFDVMVT NIFGDILSDCAAMASGSLGMLPS SLGP DR GRRKALYEPVHG Sbjct: 241 SQFDVMVTCNIFGDILSDCAAMASGSLGMLPSVSLGPPDRLGRRKALYEPVHG 293 >emb|CAM75046.1| Isocitrate/isopropylmalate dehydrogenase [Magnetospirillum gryphiswaldense MSR-1] Length = 368 Score = 342 bits (877), Expect = 7e-92, Method: Compositional matrix adjust. Identities = 165/286 (57%), Positives = 213/286 (74%), Gaps = 2/286 (0%) Query: 9 KVAVVGGEGIGPEVTAQSRRVLDWFAAKRNVPMTLREAQYGLIPYLATGKVLPEDT-AEA 67 K+ ++ G+GIG EV Q RR++DW KRN+ + E G Y G L ++T A+A Sbjct: 5 KLLILPGDGIGQEVMVQVRRIIDWMGKKRNISFDITEGLIGGSAYDVHGTPLADETLADA 64 Query: 68 MDEADAILWGATGGPETTEVPAAARKAGSLLGLRSKYDLYANLRPIVASPALSASAPLKA 127 M ADA+L GA GGP+ ++P + LL +R + L+ANLRP AL ++ LKA Sbjct: 65 M-AADAVLLGAVGGPKWDDLPFDKKPERGLLKIRKEMGLFANLRPATVFDALVDASTLKA 123 Query: 128 EVLDGVDFVIIRELTSGIYFGEPRGIETLPDGQRRGFNTEQYTTNQIRRVARSAFELART 187 +V+ G+D +I+RELT G+YFG+PRGIETLP+G+R+G NT YTT++I+R+ R+AF+LAR Sbjct: 124 DVVQGLDIMIVRELTGGLYFGQPRGIETLPNGERKGVNTLTYTTSEIQRIGRAAFDLARK 183 Query: 188 RRNKVCSVDKANVLETSVVWREEVIKLHKEEFSDVELTHLYVDNAAMQIVREPRQFDVMV 247 R K+CSVDKANVLE +V+WREE+IKL + E+ DVELTH+YVDNAAMQ+VR P+QFDVMV Sbjct: 184 RNKKLCSVDKANVLECTVLWREEMIKLQQTEYQDVELTHMYVDNAAMQLVRNPKQFDVMV 243 Query: 248 TGNIFGDILSDCAAMASGSLGMLPSASLGPVDRFGRRKALYEPVHG 293 T N+FGDILSDCAAM +GSLGMLPSASLG D G RKALYEPVHG Sbjct: 244 TENMFGDILSDCAAMLTGSLGMLPSASLGAADANGNRKALYEPVHG 289 >ref|YP_423432.1| 3-isopropylmalate dehydrogenase [Magnetospirillum magneticum AMB-1] sp|Q2VZV2.1|LEU3_MAGSA RecName: Full=3-isopropylmalate dehydrogenase; AltName: Full=3-IPM-DH; AltName: Full=Beta-IPM dehydrogenase; Short=IMDH dbj|BAE52873.1| Isocitrate/isopropylmalate dehydrogenase [Magnetospirillum magneticum AMB-1] Length = 369 Score = 330 bits (846), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 169/285 (59%), Positives = 211/285 (74%) Query: 9 KVAVVGGEGIGPEVTAQSRRVLDWFAAKRNVPMTLREAQYGLIPYLATGKVLPEDTAEAM 68 K+ ++ G+GIG EV AQ RR++DW KR + + E G Y G P +T EA Sbjct: 5 KLLILPGDGIGVEVMAQVRRIIDWMGRKRKIEFEITEGLLGGAAYDVHGTPYPAETLEAA 64 Query: 69 DEADAILWGATGGPETTEVPAAARKAGSLLGLRSKYDLYANLRPIVASPALSASAPLKAE 128 ADA+L GA GGP+ ++P + LLG+R L+ANLRP AL+ ++ LKAE Sbjct: 65 LAADAVLLGAVGGPKWDDLPFDKKPERGLLGIRKDMGLFANLRPATVLEALADASTLKAE 124 Query: 129 VLDGVDFVIIRELTSGIYFGEPRGIETLPDGQRRGFNTEQYTTNQIRRVARSAFELARTR 188 V+ G+D +I+RELT G+YFG+PRGI+TLPDG R+G+NT YTT +I+R+ R AF+LAR R Sbjct: 125 VVSGLDIMILRELTGGLYFGQPRGIDTLPDGTRKGYNTLVYTTPEIQRIGRVAFDLARKR 184 Query: 189 RNKVCSVDKANVLETSVVWREEVIKLHKEEFSDVELTHLYVDNAAMQIVREPRQFDVMVT 248 K+CSVDKANVLE +V+WREE+IKL KEEF DVELTH+YVDNAAMQ+VR P+QFDVMVT Sbjct: 185 NKKLCSVDKANVLECTVLWREEMIKLQKEEFPDVELTHMYVDNAAMQLVRNPKQFDVMVT 244 Query: 249 GNIFGDILSDCAAMASGSLGMLPSASLGPVDRFGRRKALYEPVHG 293 N+FGDILSDCAAM +GSLGMLPSASLG D G+RKALYEPVHG Sbjct: 245 ENMFGDILSDCAAMLTGSLGMLPSASLGEADAQGKRKALYEPVHG 289 >ref|ZP_00054663.1| COG0473: Isocitrate/isopropylmalate dehydrogenase [Magnetospirillum magnetotacticum MS-1] Length = 369 Score = 326 bits (836), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 168/285 (58%), Positives = 210/285 (73%) Query: 9 KVAVVGGEGIGPEVTAQSRRVLDWFAAKRNVPMTLREAQYGLIPYLATGKVLPEDTAEAM 68 K+ ++ G+GIG EV AQ RR++DW A KR V + E G Y G P +T EA Sbjct: 5 KLLILPGDGIGVEVMAQVRRIIDWMARKRKVEFEITEGLLGGAAYDVHGTPYPAETLEAA 64 Query: 69 DEADAILWGATGGPETTEVPAAARKAGSLLGLRSKYDLYANLRPIVASPALSASAPLKAE 128 ADA+L GA GGP+ ++P + LLG+R L+ANLRP AL+ ++ LK E Sbjct: 65 LAADAVLLGAVGGPKWDDLPFDKKPERGLLGIRKDMGLFANLRPATVLDALADASTLKNE 124 Query: 129 VLDGVDFVIIRELTSGIYFGEPRGIETLPDGQRRGFNTEQYTTNQIRRVARSAFELARTR 188 V+ G+D +I+RELT G+YFG+PRGI+TLPDG R+G+NT YTT +I R+ R AF+LAR R Sbjct: 125 VVSGLDIMILRELTGGLYFGQPRGIDTLPDGTRKGYNTLVYTTPEIVRIGRVAFDLARKR 184 Query: 189 RNKVCSVDKANVLETSVVWREEVIKLHKEEFSDVELTHLYVDNAAMQIVREPRQFDVMVT 248 K+CSVDKANVLE +V+WREE+IKL KEE+ DVEL+H+YVDNAAMQ+VR P+QFDVMVT Sbjct: 185 NKKLCSVDKANVLECTVLWREEMIKLQKEEYPDVELSHMYVDNAAMQLVRNPKQFDVMVT 244 Query: 249 GNIFGDILSDCAAMASGSLGMLPSASLGPVDRFGRRKALYEPVHG 293 N+FGDILSDCAAM +GSLGMLPSASLG D G+RKALYEPVHG Sbjct: 245 ENMFGDILSDCAAMLTGSLGMLPSASLGEADANGKRKALYEPVHG 289