BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0041.0034.p         (134 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_578782.1| hypothetical protein Nham_3594 [Nitrobacter ham...   158   3e-37
ref|YP_319399.1| hypothetical protein Nwi_2794 [Nitrobacter wino...   155   1e-36
ref|YP_530133.1| hypothetical protein RPC_0239 [Rhodopseudomonas...   150   5e-35
ref|ZP_01045456.1| hypothetical protein NB311A_15992 [Nitrobacte...   149   1e-34
ref|YP_567630.1| hypothetical protein RPD_0491 [Rhodopseudomonas...   148   3e-34

>ref|YP_578782.1| hypothetical protein Nham_3594 [Nitrobacter hamburgensis X14]
 gb|ABE64322.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
          Length = 130

 Score =  158 bits (399), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 88/138 (63%), Positives = 97/138 (70%), Gaps = 12/138 (8%)

Query: 1   MTLKFPAANKLVVLLAAAA----VTATAFGMTAASAQSPAKRKQQEQYDRDGRRYYGAQG 56
           MTLKFPAA +    LA         A  F  T ASA   AKRK     DR G   YG  G
Sbjct: 1   MTLKFPAATRAAKNLALLLAAAAFVAVGFNATDASA---AKRKHS---DRSGA--YGPTG 52

Query: 57  PNRVYQQGPRTRVYVTTRSWLDAGTEVLPGDRKFNDYAYPPEIGYPTFARENNNRPIDRQ 116
           PN  YQ GPRTRVY++ RSWLDAGTEVLPG+RKF+DYA+PP +GYP+FAREN NRPIDRQ
Sbjct: 53  PNVSYQSGPRTRVYISKRSWLDAGTEVLPGERKFSDYAFPPALGYPSFARENLNRPIDRQ 112

Query: 117 PLSTPADLGGYPRNFPLY 134
           PLS+PADLGGYP  FPLY
Sbjct: 113 PLSSPADLGGYPTAFPLY 130


>ref|YP_319399.1| hypothetical protein Nwi_2794 [Nitrobacter winogradskyi Nb-255]
 gb|ABA06047.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255]
          Length = 130

 Score =  155 bits (393), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 83/138 (60%), Positives = 96/138 (69%), Gaps = 12/138 (8%)

Query: 1   MTLKFPAAN---KLVVLLAAAAVTATAFGMTAASAQSPAKRKQQEQYDRDGRRYYGAQGP 57
           MTLK   A    +++ L  AAA  A  F  + ASA      KQ+   DRD    YG  GP
Sbjct: 1   MTLKISTATGAPRIIALSLAAAFIAVGFSASDASA------KQRRYLDRDSA--YGPSGP 52

Query: 58  NRVYQQGPRTRVYVTTRSWLDAGTEVLPGDRKFNDYAYPPEIGYPTFARENNNRPIDRQP 117
           N  YQ GPRTRVY++ RSWLDAGTEVLPG+RK+ DYA+PP +GYP+FAREN NRPIDRQP
Sbjct: 53  NVSYQSGPRTRVYISKRSWLDAGTEVLPGERKYTDYAFPPSVGYPSFARENLNRPIDRQP 112

Query: 118 LSTPADLGG-YPRNFPLY 134
           LS+PADLGG YP  FPLY
Sbjct: 113 LSSPADLGGRYPTGFPLY 130


>ref|YP_530133.1| hypothetical protein RPC_0239 [Rhodopseudomonas palustris BisB18]
 gb|ABD85814.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
          Length = 124

 Score =  150 bits (380), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 85/134 (63%), Positives = 94/134 (70%), Gaps = 10/134 (7%)

Query: 1   MTLKFPAANKLVVLLAAAAVTATAFGMTAASAQSPAKRKQQEQYDRDGRRYYGAQGPNRV 60
           MTLKF AA KL VLLAA AV A  F  + A+A   AKRK    YDR    Y G +GPN  
Sbjct: 1   MTLKFSAARKLTVLLAAVAVIAIGFNSSDANA---AKRKY---YDRSSTAY-GPRGPNSS 53

Query: 61  YQQGPRTRVYVTTRSWLDAGTEVLPGDRKFNDYAYPPEIGYPTFARENNNRPIDRQPLST 120
           YQ GPRTR+YVT RSWLDAGTEVLPG+RKF DYAYPP     +F  EN NRP+DRQPL+ 
Sbjct: 54  YQAGPRTRIYVTKRSWLDAGTEVLPGERKFTDYAYPPGR---SFGMENLNRPLDRQPLNP 110

Query: 121 PADLGGYPRNFPLY 134
            +DLGGYP  FPLY
Sbjct: 111 ASDLGGYPERFPLY 124


>ref|ZP_01045456.1| hypothetical protein NB311A_15992 [Nitrobacter sp. Nb-311A]
 gb|EAQ36784.1| hypothetical protein NB311A_15992 [Nitrobacter sp. Nb-311A]
          Length = 127

 Score =  149 bits (376), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 79/135 (58%), Positives = 94/135 (69%), Gaps = 9/135 (6%)

Query: 1   MTLKFPAANKLVVLLAAAAVTATAFGMTAASAQSPAKRKQQEQYDRDGRRYYGAQGPNRV 60
           MTLKF +A      +A     A   G +A  A +      + ++DR+G   YG  GPN  
Sbjct: 1   MTLKFSSATGAAKTIALLLAAAALVGFSATDASA------RPRHDRNGA--YGPSGPNVS 52

Query: 61  YQQGPRTRVYVTTRSWLDAGTEVLPGDRKFNDYAYPPEIGYPTFARENNNRPIDRQPLST 120
           YQ GPRTRVY+T RSWLDAGTEVLPG+RK+ DYA+PP +GYP+FAREN NRPIDRQPLS+
Sbjct: 53  YQSGPRTRVYITRRSWLDAGTEVLPGERKYTDYAFPPSVGYPSFARENLNRPIDRQPLSS 112

Query: 121 PADLGG-YPRNFPLY 134
           PADLGG YP  FPLY
Sbjct: 113 PADLGGRYPTGFPLY 127


>ref|YP_567630.1| hypothetical protein RPD_0491 [Rhodopseudomonas palustris BisB5]
 gb|ABE37729.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
          Length = 126

 Score =  148 bits (373), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 81/134 (60%), Positives = 92/134 (68%), Gaps = 8/134 (5%)

Query: 1   MTLKFPAANKLVVLLAAAAVTATAFGMTAASAQSPAKRKQQEQYDRDGRRYYGAQGPNRV 60
           MTLKFPAA    VLLA+AAV A     TA + Q P KR     Y  + +  YGA+GPN  
Sbjct: 1   MTLKFPAARTFAVLLASAAVVAIGLD-TANAQQQPTKRV----YQTNDQARYGARGPNAS 55

Query: 61  YQQGPRTRVYVTTRSWLDAGTEVLPGDRKFNDYAYPPEIGYPTFARENNNRPIDRQPLST 120
           YQ GPRTRVYVT RSWLDAGTEVLPGDRKF DYA+PP     +F+R+N  R IDR PL+ 
Sbjct: 56  YQAGPRTRVYVTKRSWLDAGTEVLPGDRKFTDYAFPPGT---SFSRQNGQRTIDRAPLNP 112

Query: 121 PADLGGYPRNFPLY 134
            +DLGGYP  FPLY
Sbjct: 113 ASDLGGYPERFPLY 126