BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0041.0031.p (186 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_779424.1| hypothetical protein RPE_0485 [Rhodopseudomonas... 293 1e-77 ref|ZP_08628001.1| uncharacterized protein family UPF0114 [Brady... 277 5e-73 ref|NP_945584.1| hypothetical protein RPA0231 [Rhodopseudomonas ... 269 2e-70 ref|YP_001989266.1| hypothetical protein Rpal_0230 [Rhodopseudom... 266 1e-69 ref|YP_530130.1| hypothetical protein RPC_0236 [Rhodopseudomonas... 263 8e-69 >ref|YP_779424.1| hypothetical protein RPE_0485 [Rhodopseudomonas palustris BisA53] gb|ABJ04444.1| Uncharacterized protein UPF0114 [Rhodopseudomonas palustris BisA53] Length = 189 Score = 293 bits (749), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 143/183 (78%), Positives = 159/183 (86%), Gaps = 1/183 (0%) Query: 4 AEEPATYRPNPTLKRVERSFESLLFNSRWLMAPFYFGLVISLAALLLKFCMELWHFILHV 63 +EPATY+PNP LKRVE FE +LFNSRWLMAPFY GLV+SLA LL +F EL+HFI+H Sbjct: 2 TDEPATYKPNPRLKRVEGVFEKVLFNSRWLMAPFYLGLVVSLAVLLYRFGFELFHFIVHS 61 Query: 64 PDAKESDIILGVLALIDISLTGNLILIVVFSGYENFVSKIDPEGHPDWPDWMTKVDFGGL 123 P AKESDIILGVLALID+SLTGNLILIVVFSGYENFVS+IDP GHPDWP+WMTKVDF GL Sbjct: 62 PAAKESDIILGVLALIDLSLTGNLILIVVFSGYENFVSRIDPRGHPDWPEWMTKVDFSGL 121 Query: 124 KQKLLASIVAISAIQVLKAFMNIDTVFDPSKLAWLVGVHLVFVVSAFMLAISDRWGSGHH 183 KQKLLASIVAISAIQVLKAFMNI++ FD KL WL G+HLVFVVS M+A+SDRWG H Sbjct: 122 KQKLLASIVAISAIQVLKAFMNIESSFDAQKLGWLAGIHLVFVVSTVMIALSDRWGD-HG 180 Query: 184 GGE 186 GG+ Sbjct: 181 GGK 183 >ref|ZP_08628001.1| uncharacterized protein family UPF0114 [Bradyrhizobiaceae bacterium SG-6C] gb|EGP09296.1| uncharacterized protein family UPF0114 [Bradyrhizobiaceae bacterium SG-6C] Length = 193 Score = 277 bits (709), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 135/180 (75%), Positives = 151/180 (83%), Gaps = 2/180 (1%) Query: 7 PATYRPNPTLKRVERSFESLLFNSRWLMAPFYFGLVISLAALLLKFCMELWHFILHVPDA 66 PA+Y+PNPTLKR E +FE+LLFNSRWLMAPFY GLVISL LL KF + L F+LH P A Sbjct: 11 PASYKPNPTLKRAELTFETLLFNSRWLMAPFYLGLVISLVVLLYKFVLLLVEFVLHAPSA 70 Query: 67 KESDIILGVLALIDISLTGNLILIVVFSGYENFVSKIDPEGHPDWPDWMTKVDFGGLKQK 126 KESD ILGVL+LID+SLTGNL+LIVVFSGYENFVS+IDP GHPDWP+WMTKVDF GLKQK Sbjct: 71 KESDTILGVLSLIDVSLTGNLVLIVVFSGYENFVSRIDPRGHPDWPEWMTKVDFAGLKQK 130 Query: 127 LLASIVAISAIQVLKAFMNIDTVFDPSKLAWLVGVHLVFVVSAFMLAISDRWGSGHHGGE 186 LLASIVAISAIQVLKAFMNID FD KLAWL G+HLVFVVS ++ SD+ G HG + Sbjct: 131 LLASIVAISAIQVLKAFMNIDATFDAQKLAWLAGIHLVFVVSTLLIVWSDKLGG--HGND 188 >ref|NP_945584.1| hypothetical protein RPA0231 [Rhodopseudomonas palustris CGA009] emb|CAE25675.1| Uncharacterized protein family UPF0114 [Rhodopseudomonas palustris CGA009] Length = 184 Score = 269 bits (687), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 138/184 (75%), Positives = 155/184 (84%), Gaps = 7/184 (3%) Query: 9 TYRPNPT-----LKRVERSFESLLFNSRWLMAPFYFGLVISLAALLLKFCMELWHFILHV 63 T +P+PT KRVER FE+LLFNSRWLMAPFYFGLVISL LL KF M L+ FI+H Sbjct: 2 TDQPDPTPSPSSAKRVERGFETLLFNSRWLMAPFYFGLVISLVVLLYKFVMLLYEFIVHA 61 Query: 64 PDAKESDIILGVLALIDISLTGNLILIVVFSGYENFVSKIDPEGHPDWPDWMTKVDFGGL 123 AKESDIILGVL+LID+SLTGNL+LIVVFSGYENFVS+IDP HPDWP+WMTKVDF GL Sbjct: 62 TLAKESDIILGVLSLIDVSLTGNLVLIVVFSGYENFVSRIDPGNHPDWPEWMTKVDFAGL 121 Query: 124 KQKLLASIVAISAIQVLKAFMNIDTVFDPSKLAWLVGVHLVFVVSAFMLAISDRWG-SGH 182 KQKLLASIVAISAIQVLKAFMNID+ +D +KLAWLVG+HLVFVVS ++A+SDRWG S Sbjct: 122 KQKLLASIVAISAIQVLKAFMNIDS-YDQTKLAWLVGIHLVFVVSTLIMALSDRWGHSDD 180 Query: 183 HGGE 186 GG Sbjct: 181 KGGH 184 >ref|YP_001989266.1| hypothetical protein Rpal_0230 [Rhodopseudomonas palustris TIE-1] gb|ACE98790.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1] Length = 184 Score = 266 bits (680), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 137/184 (74%), Positives = 154/184 (83%), Gaps = 7/184 (3%) Query: 9 TYRPNPT-----LKRVERSFESLLFNSRWLMAPFYFGLVISLAALLLKFCMELWHFILHV 63 T +P+PT K VER FE+LLFNSRWLMAPFYFGLVISL LL KF M L+ FI+H Sbjct: 2 TDQPDPTPSPSSAKHVERGFETLLFNSRWLMAPFYFGLVISLVVLLYKFVMLLYEFIVHA 61 Query: 64 PDAKESDIILGVLALIDISLTGNLILIVVFSGYENFVSKIDPEGHPDWPDWMTKVDFGGL 123 AKESDIILGVL+LID+SLTGNL+LIVVFSGYENFVS+IDP HPDWP+WMTKVDF GL Sbjct: 62 TLAKESDIILGVLSLIDVSLTGNLVLIVVFSGYENFVSRIDPGNHPDWPEWMTKVDFAGL 121 Query: 124 KQKLLASIVAISAIQVLKAFMNIDTVFDPSKLAWLVGVHLVFVVSAFMLAISDRWG-SGH 182 KQKLLASIVAISAIQVLKAFMNID+ +D +KLAWLVG+HLVFVVS ++A+SDRWG S Sbjct: 122 KQKLLASIVAISAIQVLKAFMNIDS-YDQTKLAWLVGIHLVFVVSTLIMALSDRWGHSDD 180 Query: 183 HGGE 186 GG Sbjct: 181 KGGH 184 >ref|YP_530130.1| hypothetical protein RPC_0236 [Rhodopseudomonas palustris BisB18] gb|ABD85811.1| Uncharacterized protein UPF0114 [Rhodopseudomonas palustris BisB18] Length = 184 Score = 263 bits (672), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 139/180 (77%), Positives = 149/180 (82%), Gaps = 4/180 (2%) Query: 7 PATYRPNPTLKRVERSFESLLFNSRWLMAPFYFGLVISLAALLLKFCMELWHFILHVPDA 66 PA R NP VER E+LLFNSRWLMAPFY GLV+SL LL KF + LW FILH P A Sbjct: 5 PAKRRTNP----VERGLEALLFNSRWLMAPFYLGLVVSLVVLLYKFGLLLWEFILHAPAA 60 Query: 67 KESDIILGVLALIDISLTGNLILIVVFSGYENFVSKIDPEGHPDWPDWMTKVDFGGLKQK 126 KESDIILGVL+LID+SLTGNLILIVVFSGYENFVS+IDP HPDWP WMTKVDF GLKQK Sbjct: 61 KESDIILGVLSLIDVSLTGNLILIVVFSGYENFVSRIDPRNHPDWPAWMTKVDFAGLKQK 120 Query: 127 LLASIVAISAIQVLKAFMNIDTVFDPSKLAWLVGVHLVFVVSAFMLAISDRWGSGHHGGE 186 LLASIVAISAIQVLKAFMNID FD KL WLVGVHLVFVV+ +LA+SDRWGS H GG+ Sbjct: 121 LLASIVAISAIQVLKAFMNIDAAFDAQKLGWLVGVHLVFVVTTLLLALSDRWGSDHGGGD 180