BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0041.0025.p (269 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001236547.1| hypothetical protein BBta_0350 [Bradyrhizobi... 435 e-120 ref|NP_767136.1| hypothetical protein blr0496 [Bradyrhizobium ja... 430 e-118 ref|YP_001202561.1| hypothetical protein BRADO0364 [Bradyrhizobi... 429 e-118 ref|NP_698118.1| hypothetical protein BR1113 [Brucella suis 1330... 166 4e-39 ref|ZP_03785623.1| Hypothetical protein, conserved [Brucella cet... 165 7e-39 >ref|YP_001236547.1| hypothetical protein BBta_0350 [Bradyrhizobium sp. BTAi1] gb|ABQ32641.1| hypothetical protein BBta_0350 [Bradyrhizobium sp. BTAi1] Length = 265 Score = 435 bits (1119), Expect = e-120, Method: Compositional matrix adjust. Identities = 208/261 (79%), Positives = 236/261 (90%) Query: 1 MLPDIVTFWHGSMDALRQTCLRSQVAAGHKVTVYSFDPIPGLPEGVGNAEAEAVLPHSFA 60 +LP++VTFW G +D LRQTCLRSQ+AAGHKVTVYSFDP+PGLP+GVGNAEAEA+LP++F+ Sbjct: 4 VLPEVVTFWRGPLDRLRQTCLRSQLAAGHKVTVYSFDPLPGLPDGVGNAEAEAILPYAFS 63 Query: 61 EKLRPAEPDGSWRDWTMLQFSDFFRMRLMAQRAGLWLDADVLLLKGVELDPAKPYFAWER 120 E+LRP +PDGSWRDWT LQFSDFFRMRLMAQ AGLWLDADVLLL+ VE+DPAKPYFAWER Sbjct: 64 ERLRPPQPDGSWRDWTTLQFSDFFRMRLMAQGAGLWLDADVLLLRPVEIDPAKPYFAWER 123 Query: 121 PRQLGNSVLYLPQNDPIVRAFEALMQQDELIPDWLALRHRLTFAMRRLRGKSNRLADIRV 180 PRQLGNSVLYLP NDPIV F+ALM Q+EL P+WL+LRHRLTFA+RRLRG SNRL+DIRV Sbjct: 124 PRQLGNSVLYLPPNDPIVAEFDALMAQEELTPNWLSLRHRLTFALRRLRGVSNRLSDIRV 183 Query: 181 AIYGPAALTALARRADELQHALPKRSFYAVHAEPRLFFEPSDFSRYLNDPGIIGLHISPK 240 AI+GPAALTALARR L+HALPKRSFYAVHAEP+ FF+PSDF+ + DP IIGLHISPK Sbjct: 184 AIFGPAALTALARRHGLLRHALPKRSFYAVHAEPKAFFDPSDFAGLIGDPAIIGLHISPK 243 Query: 241 GRGKAAPIPGSLYAWAAQRFG 261 GRG AP+PGSLY WAA RFG Sbjct: 244 GRGGEAPLPGSLYGWAADRFG 264 >ref|NP_767136.1| hypothetical protein blr0496 [Bradyrhizobium japonicum USDA 110] dbj|BAC45761.1| blr0496 [Bradyrhizobium japonicum USDA 110] Length = 261 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 204/261 (78%), Positives = 232/261 (88%) Query: 1 MLPDIVTFWHGSMDALRQTCLRSQVAAGHKVTVYSFDPIPGLPEGVGNAEAEAVLPHSFA 60 MLPDIVTFWHG MDALRQTCLRSQ+AAGHKVTVYSFD IPGLP G+ NAEAEA+LPH+F+ Sbjct: 1 MLPDIVTFWHGPMDALRQTCLRSQLAAGHKVTVYSFDTIPGLPAGIENAEAEAILPHAFS 60 Query: 61 EKLRPAEPDGSWRDWTMLQFSDFFRMRLMAQRAGLWLDADVLLLKGVELDPAKPYFAWER 120 E+LRP +PDGSWRDWT LQFSDFFRM+LMA+ GLWLDADVLLL+ VE+DPAKPYFAWER Sbjct: 61 ERLRPPQPDGSWRDWTTLQFSDFFRMKLMAKGLGLWLDADVLLLRPVEIDPAKPYFAWER 120 Query: 121 PRQLGNSVLYLPQNDPIVRAFEALMQQDELIPDWLALRHRLTFAMRRLRGKSNRLADIRV 180 PRQLGNSV+YLP IV AFE LM+Q+EL P+WL++RHR+TF MRRLRG SNRL+DIRV Sbjct: 121 PRQLGNSVIYLPPGHGIVAAFEELMEQEELTPNWLSVRHRITFMMRRLRGGSNRLSDIRV 180 Query: 181 AIYGPAALTALARRADELQHALPKRSFYAVHAEPRLFFEPSDFSRYLNDPGIIGLHISPK 240 AI+GPAALTALARR ELQ+ALPK+SFYAVHAEP+LFF+PS + + +P IIGLHISPK Sbjct: 181 AIFGPAALTALARRTGELQNALPKQSFYAVHAEPKLFFDPSSYLGLVTNPEIIGLHISPK 240 Query: 241 GRGKAAPIPGSLYAWAAQRFG 261 GRG PIPGSLYAWAA+RFG Sbjct: 241 GRGSEKPIPGSLYAWAAERFG 261 >ref|YP_001202561.1| hypothetical protein BRADO0364 [Bradyrhizobium sp. ORS 278] emb|CAL74315.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278] Length = 265 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 206/261 (78%), Positives = 234/261 (89%) Query: 1 MLPDIVTFWHGSMDALRQTCLRSQVAAGHKVTVYSFDPIPGLPEGVGNAEAEAVLPHSFA 60 +LP++VTFW G +D LRQTCLRSQ+AAGHKVTVYSFDP+PGLP+GVGNA+AEA+LP +FA Sbjct: 4 VLPEVVTFWRGPLDRLRQTCLRSQLAAGHKVTVYSFDPLPGLPDGVGNADAEAILPCAFA 63 Query: 61 EKLRPAEPDGSWRDWTMLQFSDFFRMRLMAQRAGLWLDADVLLLKGVELDPAKPYFAWER 120 E+LRP +PDGSWRDWT LQFSDFFRMRLMA+RAGLWLDADVLLL+ VE+DPA P FAWER Sbjct: 64 ERLRPPQPDGSWRDWTTLQFSDFFRMRLMAERAGLWLDADVLLLRPVEIDPALPTFAWER 123 Query: 121 PRQLGNSVLYLPQNDPIVRAFEALMQQDELIPDWLALRHRLTFAMRRLRGKSNRLADIRV 180 PRQLGNSVLYLP +DPIV F ALM QD L P+WL+LRHR+TFA+RRLRG S+RL+DIRV Sbjct: 124 PRQLGNSVLYLPPDDPIVAEFAALMAQDALTPNWLSLRHRITFALRRLRGVSDRLSDIRV 183 Query: 181 AIYGPAALTALARRADELQHALPKRSFYAVHAEPRLFFEPSDFSRYLNDPGIIGLHISPK 240 AI+GPAALTALARR L+HALPKRSFYA HAEPR FF+PSDFS ++DPGIIGLHISPK Sbjct: 184 AIFGPAALTALARRHGSLRHALPKRSFYAAHAEPRAFFDPSDFSGLISDPGIIGLHISPK 243 Query: 241 GRGKAAPIPGSLYAWAAQRFG 261 GRG APIPGSLYAWA +RFG Sbjct: 244 GRGGEAPIPGSLYAWATERFG 264 >ref|NP_698118.1| hypothetical protein BR1113 [Brucella suis 1330] ref|YP_001592952.1| hypothetical protein BCAN_A1132 [Brucella canis ATCC 23365] ref|YP_003107050.1| hypothetical protein BMI_I1125 [Brucella microti CCM 4915] ref|ZP_05836821.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40] ref|ZP_05933741.1| conserved hypothetical protein [Brucella ceti M13/05/1] ref|ZP_05936561.1| conserved hypothetical protein [Brucella ceti B1/94] ref|ZP_05956945.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] ref|ZP_05961153.1| conserved hypothetical protein [Brucella ceti M644/93/1] ref|ZP_05964401.1| conserved hypothetical protein [Brucella neotomae 5K33] ref|ZP_06101336.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] ref|ZP_06110801.1| conserved hypothetical protein [Brucella ceti M490/95/1] ref|YP_004756197.1| hypothetical protein BPI_I1160 [Brucella pinnipedialis B2/94] gb|AAN30033.1| hypothetical protein BR1113 [Brucella suis 1330] gb|ABX62181.1| Hypothetical protein BCAN_A1132 [Brucella canis ATCC 23365] gb|ACU48101.1| hypothetical protein BMI_I1125 [Brucella microti CCM 4915] gb|EEW90949.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40] gb|EEX87517.1| conserved hypothetical protein [Brucella ceti B1/94] gb|EEX91117.1| conserved hypothetical protein [Brucella ceti M13/05/1] gb|EEX98142.1| conserved hypothetical protein [Brucella ceti M644/93/1] gb|EEY00468.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gb|EEY04681.1| conserved hypothetical protein [Brucella neotomae 5K33] gb|EEZ08702.1| conserved hypothetical protein [Brucella ceti M490/95/1] gb|EEZ31237.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gb|AEK54429.1| hypothetical protein BPI_I1160 [Brucella pinnipedialis B2/94] gb|AEM18451.1| hypothetical protein BS1330_I1109 [Brucella suis 1330] Length = 276 Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 97/259 (37%), Positives = 143/259 (55%), Gaps = 4/259 (1%) Query: 4 DIVTFWHGS-MDALRQTCLRSQVAAGHKVTVYSFDPIPGLPEGVGNAEAEAVLPHSFAEK 62 DI TFW+GS + + + CL S V G +V ++++ PI +P GV +AE++LP + ++ Sbjct: 2 DICTFWYGSRLRDVDRICLASMVMTGQRVKLFAYAPIENVPPGVELHDAESILPETAFKR 61 Query: 63 LRPAEPDGSWRDWTMLQFSDFFRMRLMAQRAGLWLDADVLLLKGVELDPAKPYFAWERPR 122 L PA P+ + T++QFSD FR+ LM + G+WLD DV LLK DP KPY A E Sbjct: 62 LDPAYPNFHTQ-LTVVQFSDIFRIMLMKYQQGVWLDTDVYLLKQFHPDPDKPYLARENRS 120 Query: 123 QLGNSVLYLPQNDPIVRAFEALMQQDELIPDWLALRH-RLTFAMRRLRGKSNRLADIRVA 181 ++G S LYLP + PI+ FE M + +P WL LR +L RL K A I + Sbjct: 121 RVGVSALYLPHDHPIIHEFEDYMAATDPLPTWLGLRRGKLRPLYYRLIHKEVTPASIGIT 180 Query: 182 IYGPAALTALARRADELQHALPKRSFYA-VHAEPRLFFEPSDFSRYLNDPGIIGLHISPK 240 ++G ++ LAR+ + A P+ +FY V E ++P+ ++ P IG HI K Sbjct: 181 VFGNDGISRLARKYGIFKDAAPQENFYYWVGKEATRIYDPAYGLTPIHHPEFIGFHIHKK 240 Query: 241 GRGKAAPIPGSLYAWAAQR 259 + + PGS Y WA R Sbjct: 241 HKEVVSFQPGSFYMWAIDR 259 >ref|ZP_03785623.1| Hypothetical protein, conserved [Brucella ceti str. Cudo] ref|ZP_06002013.1| conserved hypothetical protein [Brucella sp. F5/99] gb|EEH14636.1| Hypothetical protein, conserved [Brucella ceti str. Cudo] gb|EEY26284.1| conserved hypothetical protein [Brucella sp. F5/99] Length = 276 Score = 165 bits (418), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 97/259 (37%), Positives = 142/259 (54%), Gaps = 4/259 (1%) Query: 4 DIVTFWHGS-MDALRQTCLRSQVAAGHKVTVYSFDPIPGLPEGVGNAEAEAVLPHSFAEK 62 DI TFW+GS + + CL S V G +V ++++ PI +P GV +AE++LP + ++ Sbjct: 2 DICTFWYGSRLRDVDCICLASMVMTGQRVKLFAYAPIENVPPGVELHDAESILPETAFKR 61 Query: 63 LRPAEPDGSWRDWTMLQFSDFFRMRLMAQRAGLWLDADVLLLKGVELDPAKPYFAWERPR 122 L PA P+ + T++QFSD FR+ LM + G+WLD DV LLK DP KPY A E Sbjct: 62 LDPAYPNFHTQ-LTVVQFSDIFRIMLMKYQQGVWLDTDVYLLKQFHPDPDKPYLARENRS 120 Query: 123 QLGNSVLYLPQNDPIVRAFEALMQQDELIPDWLALRH-RLTFAMRRLRGKSNRLADIRVA 181 ++G S LYLP + PI+ FE M + +P WL LR +L RL K A I + Sbjct: 121 RVGVSALYLPHDHPIIHEFEDYMAATDPLPTWLGLRRGKLRPLYYRLIHKEVTPASIGIT 180 Query: 182 IYGPAALTALARRADELQHALPKRSFYA-VHAEPRLFFEPSDFSRYLNDPGIIGLHISPK 240 ++G ++ LAR+ + A P+ +FY V E ++P+ ++ P IG HI K Sbjct: 181 VFGNDGISRLARKYGIFKDAAPQENFYYWVGKEATRIYDPAYGLTPIHHPEFIGFHIHKK 240 Query: 241 GRGKAAPIPGSLYAWAAQR 259 + + PGS Y WA R Sbjct: 241 HKEVVSFQPGSFYMWAIDR 259