BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0041.0015.p (468 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767128.1| isopropylmalate isomerase large subunit [Bradyr... 912 0.0 ref|YP_001236556.1| isopropylmalate isomerase large subunit [Bra... 911 0.0 ref|YP_001202568.1| isopropylmalate isomerase large subunit [Bra... 909 0.0 ref|ZP_01045447.1| 3-isopropylmalate dehydratase, large subunit ... 875 0.0 ref|YP_319390.1| isopropylmalate isomerase large subunit [Nitrob... 874 0.0 >ref|NP_767128.1| isopropylmalate isomerase large subunit [Bradyrhizobium japonicum USDA 110] sp|Q89X34.1|LEUC2_BRAJA RecName: Full=3-isopropylmalate dehydratase large subunit 2; AltName: Full=Alpha-IPM isomerase 2; Short=IPMI 2; AltName: Full=Isopropylmalate isomerase 2 dbj|BAC45753.1| 3-isopropylmalate dehydratase large subunit [Bradyrhizobium japonicum USDA 110] Length = 468 Score = 912 bits (2357), Expect = 0.0, Method: Compositional matrix adjust. Identities = 443/468 (94%), Positives = 460/468 (98%) Query: 1 MSKPTTLYDKIWNDHLVHEADDGTCLLYIDRHLVHEVTSPQAFEGLRAAGRKVHAPEKTL 60 MSKPTTLYDKIWNDHLVHEADDGTCLLYIDRHLVHEVTSPQAFEGLRA GRKVHAPEKTL Sbjct: 1 MSKPTTLYDKIWNDHLVHEADDGTCLLYIDRHLVHEVTSPQAFEGLRATGRKVHAPEKTL 60 Query: 61 AVVDHNIPTTDRSKPNPDPESIEQMRVMAENAKEFGIEYYNEFDKRQGIVHVIGPEQGFT 120 AVVDHN+PTTDR+KPNPDPESIEQ++ +A+NA+EFGIEYYNEFDKRQGIVHVIGPEQGFT Sbjct: 61 AVVDHNVPTTDRTKPNPDPESIEQIKALADNAREFGIEYYNEFDKRQGIVHVIGPEQGFT 120 Query: 121 LPGTTIVCGDSHTSTHGAFGALAHGIGTSEVEHVLATQTLIQKKAKNMRAIVDGKLPEGV 180 LPGTTIVCGDSHTSTHGAFGALAHGIGTSEVEHVLATQTLIQKKAKNMR VDGKLP+GV Sbjct: 121 LPGTTIVCGDSHTSTHGAFGALAHGIGTSEVEHVLATQTLIQKKAKNMRVTVDGKLPDGV 180 Query: 181 TGKDIILAIIGEIGTAGGTGYVLEYAGEAIRALSMEGRMTVCNMSIEGGARAGLVAPDQK 240 TGKDIILAIIGEIGTAGGTGYVLEYAGEAIRALSMEGRMTVCNMSIEGGARAGLVAPDQK Sbjct: 181 TGKDIILAIIGEIGTAGGTGYVLEYAGEAIRALSMEGRMTVCNMSIEGGARAGLVAPDQK 240 Query: 241 AFDFLRDRPKAPKGAAWDAAMRYWETLRSDEGAHFDHEIRLDAAKLPPIVTWGTSPEDVI 300 A+DFLRDRPKAPKGAAWDAAMRYWE LRSD+GAHFDHE+RLDAAKLPPIVTWGTSPEDVI Sbjct: 241 AYDFLRDRPKAPKGAAWDAAMRYWEKLRSDDGAHFDHELRLDAAKLPPIVTWGTSPEDVI 300 Query: 301 SVTGFVPDPDKIADEAKRISKHRALKYMGLTAGTKITDIKLDRVFIGSCTNGRIEDLRAA 360 SVTG VPDPDKIADEAKR+SKHRALKYMGLTAGTKITDIKLDRVFIGSCTNGRIEDLRAA Sbjct: 301 SVTGIVPDPDKIADEAKRLSKHRALKYMGLTAGTKITDIKLDRVFIGSCTNGRIEDLRAA 360 Query: 361 AKIAEGKTVNANVNAMIVPGSGIVKEQAEAEGLDKIFIAAGFDWREPGCSMCLAMNPDKL 420 AKIAEGK V+A+VNAM+VPGSGIVKEQAEAEGLDKIFI AGF+WREPGCSMCLAMNPDKL Sbjct: 361 AKIAEGKQVSASVNAMVVPGSGIVKEQAEAEGLDKIFIKAGFEWREPGCSMCLAMNPDKL 420 Query: 421 KPEERCASTSNRNFEGRQGFKGRTHLVSPAMAAAAAIAGHFVDVRDWR 468 KPEERCASTSNRNFEGRQGFKGRTHLVSPAMAAAAAIAGHFVDVR+WR Sbjct: 421 KPEERCASTSNRNFEGRQGFKGRTHLVSPAMAAAAAIAGHFVDVREWR 468 >ref|YP_001236556.1| isopropylmalate isomerase large subunit [Bradyrhizobium sp. BTAi1] gb|ABQ32650.1| 3-isopropylmalate dehydratase, large subunit [Bradyrhizobium sp. BTAi1] Length = 468 Score = 911 bits (2354), Expect = 0.0, Method: Compositional matrix adjust. Identities = 444/468 (94%), Positives = 459/468 (98%) Query: 1 MSKPTTLYDKIWNDHLVHEADDGTCLLYIDRHLVHEVTSPQAFEGLRAAGRKVHAPEKTL 60 MSKPTTLYDKIWNDHLVHEA+DGTCLLYIDRHLVHEVTSPQAFEGLR GRKVHAPEKTL Sbjct: 1 MSKPTTLYDKIWNDHLVHEAEDGTCLLYIDRHLVHEVTSPQAFEGLRMTGRKVHAPEKTL 60 Query: 61 AVVDHNIPTTDRSKPNPDPESIEQMRVMAENAKEFGIEYYNEFDKRQGIVHVIGPEQGFT 120 AVVDHN+PTTDRSKPNPDPESIEQ++ +AENA+EFGIEYYNEFD+RQGIVHVIGPEQGFT Sbjct: 61 AVVDHNVPTTDRSKPNPDPESIEQIKTLAENAREFGIEYYNEFDRRQGIVHVIGPEQGFT 120 Query: 121 LPGTTIVCGDSHTSTHGAFGALAHGIGTSEVEHVLATQTLIQKKAKNMRAIVDGKLPEGV 180 LPGTTIVCGDSHTSTHGAFGALAHGIGTSEVEHVLATQTLIQKKAKNMR VDGKLP+GV Sbjct: 121 LPGTTIVCGDSHTSTHGAFGALAHGIGTSEVEHVLATQTLIQKKAKNMRVTVDGKLPDGV 180 Query: 181 TGKDIILAIIGEIGTAGGTGYVLEYAGEAIRALSMEGRMTVCNMSIEGGARAGLVAPDQK 240 TGKDIILAIIGEIGTAGGTGYVLEYAGEAIRALSMEGRMTVCNMSIEGGARAGLVAPD+K Sbjct: 181 TGKDIILAIIGEIGTAGGTGYVLEYAGEAIRALSMEGRMTVCNMSIEGGARAGLVAPDEK 240 Query: 241 AFDFLRDRPKAPKGAAWDAAMRYWETLRSDEGAHFDHEIRLDAAKLPPIVTWGTSPEDVI 300 A+DFLR RPKAPKGAAWDAAMRYWETLRSD+GAHFDHEIRLDAAKLPPIVTWGTSPEDVI Sbjct: 241 AYDFLRGRPKAPKGAAWDAAMRYWETLRSDDGAHFDHEIRLDAAKLPPIVTWGTSPEDVI 300 Query: 301 SVTGFVPDPDKIADEAKRISKHRALKYMGLTAGTKITDIKLDRVFIGSCTNGRIEDLRAA 360 SVTG VPDPDKIADEAKRISKHRALKYMGLTAGTKITDIKLDRVFIGSCTNGRIEDLRAA Sbjct: 301 SVTGVVPDPDKIADEAKRISKHRALKYMGLTAGTKITDIKLDRVFIGSCTNGRIEDLRAA 360 Query: 361 AKIAEGKTVNANVNAMIVPGSGIVKEQAEAEGLDKIFIAAGFDWREPGCSMCLAMNPDKL 420 AKIAEGKTV+A+VNAM+VPGSGIVKEQAEAEGLDKIFI AGF+WREPGCSMCLAMNPDKL Sbjct: 361 AKIAEGKTVSAHVNAMVVPGSGIVKEQAEAEGLDKIFIKAGFEWREPGCSMCLAMNPDKL 420 Query: 421 KPEERCASTSNRNFEGRQGFKGRTHLVSPAMAAAAAIAGHFVDVRDWR 468 PEERCASTSNRNFEGRQGFKGRTHLVSPAMAAAAAIAGHFVDVRDWR Sbjct: 421 TPEERCASTSNRNFEGRQGFKGRTHLVSPAMAAAAAIAGHFVDVRDWR 468 >ref|YP_001202568.1| isopropylmalate isomerase large subunit [Bradyrhizobium sp. ORS 278] emb|CAL74322.1| 3-isopropylmalate dehydratase large subunit 2 (Isopropylmalate isomerase 2) (Alpha-IPM isomerase 2) (IPMI 2) [Bradyrhizobium sp. ORS 278] Length = 468 Score = 909 bits (2348), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/468 (94%), Positives = 459/468 (98%) Query: 1 MSKPTTLYDKIWNDHLVHEADDGTCLLYIDRHLVHEVTSPQAFEGLRAAGRKVHAPEKTL 60 MSKPTTLYDKIWNDHLVHEA+DGTCLLYIDRHLVHEVTSPQAFEGLR GRKVHAPEKTL Sbjct: 1 MSKPTTLYDKIWNDHLVHEAEDGTCLLYIDRHLVHEVTSPQAFEGLRMTGRKVHAPEKTL 60 Query: 61 AVVDHNIPTTDRSKPNPDPESIEQMRVMAENAKEFGIEYYNEFDKRQGIVHVIGPEQGFT 120 AVVDHN+PTTDRSKPNPDPESIEQ++ +AENAK+FGIEYYNEFD+RQGIVHVIGPEQGFT Sbjct: 61 AVVDHNVPTTDRSKPNPDPESIEQIKTLAENAKDFGIEYYNEFDRRQGIVHVIGPEQGFT 120 Query: 121 LPGTTIVCGDSHTSTHGAFGALAHGIGTSEVEHVLATQTLIQKKAKNMRAIVDGKLPEGV 180 LPGTTIVCGDSHTSTHGAFGALAHGIGTSEVEHVLATQTLIQKKAKNMR VDGKLP+GV Sbjct: 121 LPGTTIVCGDSHTSTHGAFGALAHGIGTSEVEHVLATQTLIQKKAKNMRVTVDGKLPDGV 180 Query: 181 TGKDIILAIIGEIGTAGGTGYVLEYAGEAIRALSMEGRMTVCNMSIEGGARAGLVAPDQK 240 TGKDIILAIIGEIGTAGGTGYVLEYAGEAIRALSMEGRMTVCNMSIEGGARAGLVAPD+K Sbjct: 181 TGKDIILAIIGEIGTAGGTGYVLEYAGEAIRALSMEGRMTVCNMSIEGGARAGLVAPDEK 240 Query: 241 AFDFLRDRPKAPKGAAWDAAMRYWETLRSDEGAHFDHEIRLDAAKLPPIVTWGTSPEDVI 300 A+DFLR RPKAP+GAAWDAAMRYWETLRSDEGAHFDHE+RLDAAKLPPIVTWGTSPEDVI Sbjct: 241 AYDFLRGRPKAPQGAAWDAAMRYWETLRSDEGAHFDHELRLDAAKLPPIVTWGTSPEDVI 300 Query: 301 SVTGFVPDPDKIADEAKRISKHRALKYMGLTAGTKITDIKLDRVFIGSCTNGRIEDLRAA 360 SVTG VPDPDKIADEAKRISKHRALKYMGLTAGTKITDIKLDRVFIGSCTNGRIEDLRAA Sbjct: 301 SVTGMVPDPDKIADEAKRISKHRALKYMGLTAGTKITDIKLDRVFIGSCTNGRIEDLRAA 360 Query: 361 AKIAEGKTVNANVNAMIVPGSGIVKEQAEAEGLDKIFIAAGFDWREPGCSMCLAMNPDKL 420 AKIAEGKTV+++VNAM+VPGSGIVKEQAEAEGLDKIFI AGF+WREPGCSMCLAMNPDKL Sbjct: 361 AKIAEGKTVSSHVNAMVVPGSGIVKEQAEAEGLDKIFIKAGFEWREPGCSMCLAMNPDKL 420 Query: 421 KPEERCASTSNRNFEGRQGFKGRTHLVSPAMAAAAAIAGHFVDVRDWR 468 PEERCASTSNRNFEGRQGFKGRTHLVSPAMAAAAAIAGHFVDVRDWR Sbjct: 421 APEERCASTSNRNFEGRQGFKGRTHLVSPAMAAAAAIAGHFVDVRDWR 468 >ref|ZP_01045447.1| 3-isopropylmalate dehydratase, large subunit region [Nitrobacter sp. Nb-311A] gb|EAQ36775.1| 3-isopropylmalate dehydratase, large subunit region [Nitrobacter sp. Nb-311A] Length = 468 Score = 875 bits (2261), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/467 (89%), Positives = 448/467 (95%) Query: 1 MSKPTTLYDKIWNDHLVHEADDGTCLLYIDRHLVHEVTSPQAFEGLRAAGRKVHAPEKTL 60 MSKPTTLYDKIWNDHLVHEA+DGTCLLYIDRHLVHEVTSPQAFEGLR AGRKVHAPEKTL Sbjct: 1 MSKPTTLYDKIWNDHLVHEAEDGTCLLYIDRHLVHEVTSPQAFEGLRVAGRKVHAPEKTL 60 Query: 61 AVVDHNIPTTDRSKPNPDPESIEQMRVMAENAKEFGIEYYNEFDKRQGIVHVIGPEQGFT 120 AVVDHN+PTTDRSKPNPDPES EQ+ +A+NA++FGIEYYNEFDKRQGIVHVIGPEQGFT Sbjct: 61 AVVDHNVPTTDRSKPNPDPESAEQIAALAQNARDFGIEYYNEFDKRQGIVHVIGPEQGFT 120 Query: 121 LPGTTIVCGDSHTSTHGAFGALAHGIGTSEVEHVLATQTLIQKKAKNMRAIVDGKLPEGV 180 LPGTTIVCGDSHTSTHGAFGALAHGIGTSEVEHVLATQTLIQKKAKNMRA+V+GKLP+GV Sbjct: 121 LPGTTIVCGDSHTSTHGAFGALAHGIGTSEVEHVLATQTLIQKKAKNMRAVVNGKLPDGV 180 Query: 181 TGKDIILAIIGEIGTAGGTGYVLEYAGEAIRALSMEGRMTVCNMSIEGGARAGLVAPDQK 240 T KDIILAIIGEIGTAGGTGYVLEYAGEAIRALSMEGRMTVCNMSIEGGARAGL+APD+ Sbjct: 181 TAKDIILAIIGEIGTAGGTGYVLEYAGEAIRALSMEGRMTVCNMSIEGGARAGLIAPDET 240 Query: 241 AFDFLRDRPKAPKGAAWDAAMRYWETLRSDEGAHFDHEIRLDAAKLPPIVTWGTSPEDVI 300 A++FL+ RPKAPKGA WDAAMRYWE LRSDEGAHFDHEIRLDAA LPPIVTWGTSPEDVI Sbjct: 241 AYEFLKGRPKAPKGAGWDAAMRYWENLRSDEGAHFDHEIRLDAAMLPPIVTWGTSPEDVI 300 Query: 301 SVTGFVPDPDKIADEAKRISKHRALKYMGLTAGTKITDIKLDRVFIGSCTNGRIEDLRAA 360 +VTG VPDP I DEAKR+SK RAL YMGL+ GTKITDIKLDRVFIGSCTNGRIEDLRAA Sbjct: 301 AVTGKVPDPADIEDEAKRLSKERALHYMGLSPGTKITDIKLDRVFIGSCTNGRIEDLRAA 360 Query: 361 AKIAEGKTVNANVNAMIVPGSGIVKEQAEAEGLDKIFIAAGFDWREPGCSMCLAMNPDKL 420 AKIA+G+TVN NVNAM+VPGSG+VKEQAEAEG+DKIFI AGF+WREPGCSMCLAMNPDKL Sbjct: 361 AKIADGRTVNGNVNAMVVPGSGLVKEQAEAEGIDKIFIKAGFEWREPGCSMCLAMNPDKL 420 Query: 421 KPEERCASTSNRNFEGRQGFKGRTHLVSPAMAAAAAIAGHFVDVRDW 467 KP+ERCASTSNRNFEGRQGFKGRTHLVSP+MAAAAAIAGHFVD+R+W Sbjct: 421 KPDERCASTSNRNFEGRQGFKGRTHLVSPSMAAAAAIAGHFVDIREW 467 >ref|YP_319390.1| isopropylmalate isomerase large subunit [Nitrobacter winogradskyi Nb-255] sp|Q3SNV3.1|LEUC_NITWN RecName: Full=3-isopropylmalate dehydratase large subunit; AltName: Full=Alpha-IPM isomerase; Short=IPMI; AltName: Full=Isopropylmalate isomerase gb|ABA06038.1| 3-isopropylmalate dehydratase, large subunit [Nitrobacter winogradskyi Nb-255] Length = 468 Score = 874 bits (2259), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/468 (89%), Positives = 449/468 (95%) Query: 1 MSKPTTLYDKIWNDHLVHEADDGTCLLYIDRHLVHEVTSPQAFEGLRAAGRKVHAPEKTL 60 MS+PTTLYDKIWNDHLVHEA+DGTCL+YIDRHLVHEVTSPQAFEGLR AGRKVHAPEKTL Sbjct: 1 MSQPTTLYDKIWNDHLVHEAEDGTCLIYIDRHLVHEVTSPQAFEGLRVAGRKVHAPEKTL 60 Query: 61 AVVDHNIPTTDRSKPNPDPESIEQMRVMAENAKEFGIEYYNEFDKRQGIVHVIGPEQGFT 120 AVVDHN+PTTDRSKPNPDPES EQ+ +A+NA++FGIEYYNEFDKRQGIVHVIGPEQGFT Sbjct: 61 AVVDHNVPTTDRSKPNPDPESAEQIAALAQNARDFGIEYYNEFDKRQGIVHVIGPEQGFT 120 Query: 121 LPGTTIVCGDSHTSTHGAFGALAHGIGTSEVEHVLATQTLIQKKAKNMRAIVDGKLPEGV 180 LPGTTIVCGDSHTSTHGAFGALAHGIGTSEVEHVLATQTLIQKKAKNMRA+VDGKLP+GV Sbjct: 121 LPGTTIVCGDSHTSTHGAFGALAHGIGTSEVEHVLATQTLIQKKAKNMRAVVDGKLPDGV 180 Query: 181 TGKDIILAIIGEIGTAGGTGYVLEYAGEAIRALSMEGRMTVCNMSIEGGARAGLVAPDQK 240 T KDIILAIIGEIGTAGGTGYVLEYAGEAIRALSMEGRMTVCNMSIEGGARAGL+APD+ Sbjct: 181 TAKDIILAIIGEIGTAGGTGYVLEYAGEAIRALSMEGRMTVCNMSIEGGARAGLIAPDET 240 Query: 241 AFDFLRDRPKAPKGAAWDAAMRYWETLRSDEGAHFDHEIRLDAAKLPPIVTWGTSPEDVI 300 A++FL+ RPKAPKGA WDAA+RYWETLRSD+GAHFDHEIRLDAAKLPPIVTWGTSPEDVI Sbjct: 241 AYEFLKGRPKAPKGADWDAALRYWETLRSDDGAHFDHEIRLDAAKLPPIVTWGTSPEDVI 300 Query: 301 SVTGFVPDPDKIADEAKRISKHRALKYMGLTAGTKITDIKLDRVFIGSCTNGRIEDLRAA 360 +VTG VPDP I DEAKR+SK RAL YMGL GTKITDI+LDRVFIGSCTNGRIEDLRAA Sbjct: 301 AVTGKVPDPAAIEDEAKRLSKERALHYMGLLPGTKITDIRLDRVFIGSCTNGRIEDLRAA 360 Query: 361 AKIAEGKTVNANVNAMIVPGSGIVKEQAEAEGLDKIFIAAGFDWREPGCSMCLAMNPDKL 420 AKIAEG+TVN NV+AM+VPGSG+VKEQAEAEGLDKIF AGF+WREPGCSMCLAMNPDKL Sbjct: 361 AKIAEGRTVNGNVSAMVVPGSGLVKEQAEAEGLDKIFTRAGFEWREPGCSMCLAMNPDKL 420 Query: 421 KPEERCASTSNRNFEGRQGFKGRTHLVSPAMAAAAAIAGHFVDVRDWR 468 KP+ERCASTSNRNFEGRQGFKGRTHLVSP+MAAAAAIAGHFVD+R+WR Sbjct: 421 KPDERCASTSNRNFEGRQGFKGRTHLVSPSMAAAAAIAGHFVDIREWR 468