BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0041.0008.p         (129 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_767124.1| transcriptional regulator [Bradyrhizobium japon...   233   8e-60
ref|YP_557564.1| LysR family transcriptional regulator [Burkhold...   161   3e-38
ref|YP_001862003.1| LysR family transcriptional regulator [Burkh...   159   1e-37
ref|ZP_06845111.1| transcriptional regulator, LysR family [Burkh...   157   6e-37
ref|YP_001757064.1| LysR family transcriptional regulator [Methy...   153   8e-36

>ref|NP_767124.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 dbj|BAC45749.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 305

 Score =  233 bits (594), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 111/128 (86%), Positives = 119/128 (92%)

Query: 1   VCSPKLSAQLPLREIADLSRHTLLHVTSMPRLWRDWLTEAGQSALEPAAALTFDHFYLTI 60
           VCSP L A+LPL E+ADLSRHTLLHVTSMPRLWRDWLT+AG+SALE AA+LTFDHFYLT+
Sbjct: 177 VCSPALLAKLPLTEVADLSRHTLLHVTSMPRLWRDWLTDAGESALEGAASLTFDHFYLTL 236

Query: 61  QAALDGLGVAMGPTALIADDLAAGRLVTPFPDVSLPARSYFAYFPAGRSSDPHSAVFCDW 120
           QAALDGLGVAMGPTALIADDLAAGRLVTPFP++SLPARSYFAYFP GR  DPH AVFCDW
Sbjct: 237 QAALDGLGVAMGPTALIADDLAAGRLVTPFPNISLPARSYFAYFPEGRDDDPHRAVFCDW 296

Query: 121 LEQQGRMT 128
           LEQQGR T
Sbjct: 297 LEQQGRQT 304


>ref|YP_557564.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gb|ABE29512.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 302

 Score =  161 bits (407), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 79/125 (63%), Positives = 95/125 (76%)

Query: 1   VCSPKLSAQLPLREIADLSRHTLLHVTSMPRLWRDWLTEAGQSALEPAAALTFDHFYLTI 60
           VCSP L  + PLR   DL +HTLLH +S+PRLW DWL  A   AL PAAALTFDHFYLT+
Sbjct: 169 VCSPALLQRQPLRTPDDLRQHTLLHTSSLPRLWPDWLASAKIPALRPAAALTFDHFYLTL 228

Query: 61  QAALDGLGVAMGPTALIADDLAAGRLVTPFPDVSLPARSYFAYFPAGRSSDPHSAVFCDW 120
           QAA+DG+G+AMGPTAL++DDLAAGRLV PF    LP+RSY  Y P G+S+D   A+F  W
Sbjct: 229 QAAIDGIGIAMGPTALVSDDLAAGRLVAPFAGPRLPSRSYCTYVPDGKSADDLVALFRAW 288

Query: 121 LEQQG 125
           LE++G
Sbjct: 289 LEREG 293


>ref|YP_001862003.1| LysR family transcriptional regulator [Burkholderia phymatum
           STM815]
 gb|ACC74957.1| transcriptional regulator, LysR family [Burkholderia phymatum
           STM815]
          Length = 295

 Score =  159 bits (402), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 77/125 (61%), Positives = 94/125 (75%)

Query: 1   VCSPKLSAQLPLREIADLSRHTLLHVTSMPRLWRDWLTEAGQSALEPAAALTFDHFYLTI 60
           VCSP L  ++PLR  ADL +HTLLH +S+PRLW DWL  A   A+ PAA LTFDHFYLT+
Sbjct: 169 VCSPALLQRVPLRSPADLRQHTLLHTSSLPRLWPDWLASAQIPAMRPAATLTFDHFYLTL 228

Query: 61  QAALDGLGVAMGPTALIADDLAAGRLVTPFPDVSLPARSYFAYFPAGRSSDPHSAVFCDW 120
           QAA+DG+GVAMGPTAL++DDLAAGRLV PF    LP+RSY +Y P  +S D    +F  W
Sbjct: 229 QAAIDGIGVAMGPTALVSDDLAAGRLVAPFSAPRLPSRSYCSYVPDEKSGDELVGLFRTW 288

Query: 121 LEQQG 125
           LE++G
Sbjct: 289 LEREG 293


>ref|ZP_06845111.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gb|EFG67295.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 302

 Score =  157 bits (397), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 77/125 (61%), Positives = 93/125 (74%)

Query: 1   VCSPKLSAQLPLREIADLSRHTLLHVTSMPRLWRDWLTEAGQSALEPAAALTFDHFYLTI 60
           VCSP L  + PL    DL +HTLLH +S+PRLW DWL  A   AL PAAAL FDHFYLT+
Sbjct: 169 VCSPALLQRQPLHTPDDLRQHTLLHTSSLPRLWPDWLASAKIPALRPAAALIFDHFYLTL 228

Query: 61  QAALDGLGVAMGPTALIADDLAAGRLVTPFPDVSLPARSYFAYFPAGRSSDPHSAVFCDW 120
           QAA+DG+G+AMGPTAL++DDLAAGRLV PF    LP+RSY  Y P G+S+D   A+F  W
Sbjct: 229 QAAIDGIGIAMGPTALVSDDLAAGRLVAPFAGPRLPSRSYCTYVPDGKSTDDLVALFRAW 288

Query: 121 LEQQG 125
           LE++G
Sbjct: 289 LEREG 293


>ref|YP_001757064.1| LysR family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gb|ACB26381.1| transcriptional regulator, LysR family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 295

 Score =  153 bits (387), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 75/127 (59%), Positives = 88/127 (69%)

Query: 1   VCSPKLSAQLPLREIADLSRHTLLHVTSMPRLWRDWLTEAGQSALEPAAALTFDHFYLTI 60
           VCSP L  +LPLR   DL +HTLLH  ++PR+W DWL  AG   L P A +T +HFYLT+
Sbjct: 168 VCSPDLLRRLPLRVPEDLRQHTLLHAATLPRVWPDWLRAAGVPDLAPRATVTLEHFYLTL 227

Query: 61  QAALDGLGVAMGPTALIADDLAAGRLVTPFPDVSLPARSYFAYFPAGRSSDPHSAVFCDW 120
           QAALDGLGVAMGP  LIADD+AAGRL  PF   +LPARSY+AY P  R+ DP    FC W
Sbjct: 228 QAALDGLGVAMGPERLIADDVAAGRLTLPFAGPALPARSYYAYVPEPRAEDPAVRAFCGW 287

Query: 121 LEQQGRM 127
           L +  R 
Sbjct: 288 LAEAARQ 294