BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0041.0007.p (177 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001236559.1| 16S rRNA-processing protein RimM [Bradyrhizo... 271 3e-71 ref|NP_767123.1| 16S rRNA-processing protein RimM [Bradyrhizobiu... 270 5e-71 ref|YP_001202571.1| 16S rRNA-processing protein RimM [Bradyrhizo... 270 6e-71 ref|YP_567647.1| 16S rRNA-processing protein RimM [Rhodopseudomo... 268 2e-70 ref|YP_779268.1| 16S rRNA-processing protein RimM [Rhodopseudomo... 266 8e-70 >ref|YP_001236559.1| 16S rRNA-processing protein RimM [Bradyrhizobium sp. BTAi1] sp|A5E909.1|RIMM_BRASB RecName: Full=Ribosome maturation factor rimM gb|ABQ32653.1| 16S rRNA processing protein RimM [Bradyrhizobium sp. BTAi1] Length = 198 Score = 271 bits (693), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 130/164 (79%), Positives = 143/164 (87%) Query: 5 VCVARIGAAHGVRGAVRLWTFTEDPLAVKDYGPLMTKDGTRQFEVTHAREAKDHLVVTLK 64 +CVA+IGAAHGVRG VRLWTFTEDPLAV YGPL TKDG+R FEV AREAKDHLV T+K Sbjct: 5 ICVAKIGAAHGVRGEVRLWTFTEDPLAVLHYGPLTTKDGSRSFEVAKAREAKDHLVATIK 64 Query: 65 GVASRDDAERLNGLELYVPRDRLPDTDDGEYYHTDLIGLAAVTTTEQPLGRVIAIHNFGA 124 GV R+ AERLNGLELYVPRDRLP+TDD EYYH DLIGLAA TT PLGRV+AIHNFGA Sbjct: 65 GVTDRNAAERLNGLELYVPRDRLPETDDDEYYHADLIGLAAETTAGAPLGRVLAIHNFGA 124 Query: 125 GDIIEIAPPQGATMLLPFTNAVVPTVDLEGGRVVIDLPKEIDDE 168 GDIIEIAPP G+T++LPFTNAVVPTVDL GGRV+I+LP EI+ E Sbjct: 125 GDIIEIAPPSGSTLMLPFTNAVVPTVDLAGGRVIIELPAEIEGE 168 >ref|NP_767123.1| 16S rRNA-processing protein RimM [Bradyrhizobium japonicum USDA 110] sp|Q89X39.1|RIMM_BRAJA RecName: Full=Ribosome maturation factor rimM dbj|BAC45748.1| 16S rRNA processing protein [Bradyrhizobium japonicum USDA 110] Length = 173 Score = 270 bits (691), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 127/165 (76%), Positives = 148/165 (89%) Query: 1 VAAPVCVARIGAAHGVRGAVRLWTFTEDPLAVKDYGPLMTKDGTRQFEVTHAREAKDHLV 60 ++A VCVARIGAAHGVRGAV+LWTFTEDP A+K YGPL++KDG RQFEV AREAKDHLV Sbjct: 1 MSALVCVARIGAAHGVRGAVKLWTFTEDPFAIKRYGPLLSKDGKRQFEVAQAREAKDHLV 60 Query: 61 VTLKGVASRDDAERLNGLELYVPRDRLPDTDDGEYYHTDLIGLAAVTTTEQPLGRVIAIH 120 T KGV +RD+AERLNG+ELYV R++LP TD+ EYYHTDLIGLAAVTT +PLGRV+AIH Sbjct: 61 ATFKGVTTRDEAERLNGIELYVAREKLPATDEDEYYHTDLIGLAAVTTDGEPLGRVLAIH 120 Query: 121 NFGAGDIIEIAPPQGATMLLPFTNAVVPTVDLEGGRVVIDLPKEI 165 NFGAGDIIEIAPP+GA++LLPF+NAVVP VD+ GGRVV+ LP+EI Sbjct: 121 NFGAGDIIEIAPPKGASLLLPFSNAVVPEVDVAGGRVVVALPQEI 165 >ref|YP_001202571.1| 16S rRNA-processing protein RimM [Bradyrhizobium sp. ORS 278] sp|A4YK99.1|RIMM_BRASO RecName: Full=Ribosome maturation factor rimM emb|CAL74325.1| 16S rRNA processing protein, putative function [Bradyrhizobium sp. ORS 278] Length = 199 Score = 270 bits (690), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 132/169 (78%), Positives = 146/169 (86%), Gaps = 4/169 (2%) Query: 5 VCVARIGAAHGVRGAVRLWTFTEDPLAVKDYGPLMTKDGTRQFEVTHAREAKDHLVVTLK 64 +CVARIGAAHGVRG VRLWTFTEDPLAV YGPL TKDG+R FEVT AREAKDHLV + K Sbjct: 6 ICVARIGAAHGVRGEVRLWTFTEDPLAVLHYGPLTTKDGSRSFEVTKAREAKDHLVASFK 65 Query: 65 GVASRDDAERLNGLELYVPRDRLPDTDDGEYYHTDLIGLAAVTTTEQPLGRVIAIHNFGA 124 G+ R+ AERLNG+ELYVPRDRLP+TDD EYYH DLIGLAA TT PLGRV+AIHNFGA Sbjct: 66 GITDRNAAERLNGVELYVPRDRLPETDDDEYYHADLIGLAAETTAGAPLGRVLAIHNFGA 125 Query: 125 GDIIEIAPPQGATMLLPFTNAVVPTVDLEGGRVVIDLPKEIDDEIDGDD 173 GDIIEIAPP G+T++LPFTNAVVPTVDL GGRV+I+LP DEIDG+D Sbjct: 126 GDIIEIAPPSGSTLMLPFTNAVVPTVDLAGGRVIIELP----DEIDGED 170 >ref|YP_567647.1| 16S rRNA-processing protein RimM [Rhodopseudomonas palustris BisB5] sp|Q13DU3.1|RIMM_RHOPS RecName: Full=Ribosome maturation factor rimM gb|ABE37746.1| 16S rRNA processing protein RimM [Rhodopseudomonas palustris BisB5] Length = 176 Score = 268 bits (685), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 130/171 (76%), Positives = 147/171 (85%), Gaps = 4/171 (2%) Query: 5 VCVARIGAAHGVRGAVRLWTFTEDPLAVKDYGPLMTKDGTRQFEVTHAREAKDHLVVTLK 64 +C+ARIGA HGVRGA+RLW+FT +PLAV DYGPL TKDG R FE+ AR AKDHLVVTLK Sbjct: 6 ICIARIGAPHGVRGAMRLWSFTAEPLAVMDYGPLATKDGARSFEIATARPAKDHLVVTLK 65 Query: 65 GVASRDDAERLNGLELYVPRDRLPDTDDGEYYHTDLIGLAAVTTTEQPLGRVIAIHNFGA 124 GVA+R++AERLNGLELYVPRDRLP T+DGEYYH DLIGL A+T +PLGRV+AIHNFGA Sbjct: 66 GVATREEAERLNGLELYVPRDRLPPTEDGEYYHADLIGLPAITPAGEPLGRVLAIHNFGA 125 Query: 125 GDIIEIAPPQGATMLLPFTNAVVPTVDLEGGRVVIDLPKEIDDEIDGDDPS 175 GDIIEIAPPQGAT+LLPFTNAVVPTVDL G VVI+LP EI+GD P+ Sbjct: 126 GDIIEIAPPQGATLLLPFTNAVVPTVDLTAGHVVIELPT----EIEGDTPN 172 >ref|YP_779268.1| 16S rRNA-processing protein RimM [Rhodopseudomonas palustris BisA53] sp|Q07UU6.1|RIMM_RHOP5 RecName: Full=Ribosome maturation factor rimM gb|ABJ04288.1| 16S rRNA processing protein RimM [Rhodopseudomonas palustris BisA53] Length = 176 Score = 266 bits (680), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 131/171 (76%), Positives = 149/171 (87%), Gaps = 4/171 (2%) Query: 5 VCVARIGAAHGVRGAVRLWTFTEDPLAVKDYGPLMTKDGTRQFEVTHAREAKDHLVVTLK 64 +CVARIGA HGVRGA++LW FTEDPLAV DYGPL T+DG+R+FEV AREAKDHLV TLK Sbjct: 6 ICVARIGAPHGVRGALKLWPFTEDPLAVLDYGPLTTQDGSRRFEVETAREAKDHLVATLK 65 Query: 65 GVASRDDAERLNGLELYVPRDRLPDTDDGEYYHTDLIGLAAVTTTEQPLGRVIAIHNFGA 124 GVASRDDA RLNG+ELY+ RD+LP+TD+GEYYH DLIGLAAVT +PLG+V AIHNFGA Sbjct: 66 GVASRDDAVRLNGIELYIDRDQLPETDEGEYYHADLIGLAAVTAAGEPLGKVAAIHNFGA 125 Query: 125 GDIIEIAPPQGATMLLPFTNAVVPTVDLEGGRVVIDLPKEIDDEIDGDDPS 175 GDIIEIAPP G T+LLPFTNAVVPTVDLEGGRVVI++P EI+GD P+ Sbjct: 126 GDIIEIAPPSGPTLLLPFTNAVVPTVDLEGGRVVIEMPG----EIEGDTPN 172