BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0041.0003.p (358 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08628018.1| hypothetical protein CSIRO_1088 [Bradyrhizobi... 543 e-152 ref|NP_767120.1| hypothetical protein bll0480 [Bradyrhizobium ja... 530 e-148 ref|YP_530112.1| twin-arginine translocation pathway signal [Rho... 496 e-138 ref|YP_779263.1| hypothetical protein RPE_0324 [Rhodopseudomonas... 495 e-138 ref|NP_945600.1| putative outer membrane protein [Rhodopseudomon... 491 e-137 >ref|ZP_08628018.1| hypothetical protein CSIRO_1088 [Bradyrhizobiaceae bacterium SG-6C] gb|EGP09313.1| hypothetical protein CSIRO_1088 [Bradyrhizobiaceae bacterium SG-6C] Length = 363 Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust. Identities = 259/323 (80%), Positives = 285/323 (88%), Gaps = 2/323 (0%) Query: 3 ITRRRLLATLTGAAAAIGVPSIWMSLMKTYDGPVSDHFDGLHFFDPDGSPPKSLGEVLRW 62 +TRRRL + GAAA +G+PS+W+S MKTY GP SDHFDG +FFDPDGSPPK L EVLRW Sbjct: 14 VTRRRLFGLIAGAAATVGLPSVWISRMKTYAGPPSDHFDGTYFFDPDGSPPKKLWEVLRW 73 Query: 63 QFGGGRQRAVWPEWAPSPHADTPPPRVDGDRVRFCFVGHASWLIQTAGLNILFDPVWSMR 122 Q +Q A WPEWAPSP+ADTPPP+V+GD+VRFC+VGHASWLIQTAGLNIL DPVWS R Sbjct: 74 QVT--KQAAKWPEWAPSPYADTPPPQVNGDKVRFCYVGHASWLIQTAGLNILVDPVWSER 131 Query: 123 ASPFSFAGPKRHNDPGIAFEKLPRIDVVLVSHGHYDHLDVATLSRLAGAFGSRVITPLGN 182 ASP +FAGPKR NDPGIAF+KLP IDVVLVSHGHYDHLD TLSRLA F RVITPLGN Sbjct: 132 ASPVAFAGPKRVNDPGIAFDKLPAIDVVLVSHGHYDHLDARTLSRLAAKFSPRVITPLGN 191 Query: 183 DVTMRTSDAAIKAEAFDWHQRIELGNGLAATLVPTRHWSARGLFDRNKALWASFVLETPA 242 DVTM ++DAAI+AE FDWH R+E+GNG+A TLVPTRHW+ARGLFDRNKALWASFVLETPA Sbjct: 192 DVTMMSNDAAIRAEGFDWHHRVEIGNGVAVTLVPTRHWTARGLFDRNKALWASFVLETPA 251 Query: 243 GKLYIVGDSGYGDGGHFRRVAEAHGPLRLAILPIGAYEPRWFMRDQHMNPEDAVKALADC 302 GKLY+VGDSGYG G HFRRV EAHGP+R AILPIGAYEPRWFMRDQHMNP+DAVKAL+DC Sbjct: 252 GKLYLVGDSGYGTGVHFRRVREAHGPIRAAILPIGAYEPRWFMRDQHMNPDDAVKALSDC 311 Query: 303 GAAQALAHHHGTFQLTDEAIDAP 325 GA ALAHHHGTFQLTDEAIDAP Sbjct: 312 GAEMALAHHHGTFQLTDEAIDAP 334 >ref|NP_767120.1| hypothetical protein bll0480 [Bradyrhizobium japonicum USDA 110] dbj|BAC45745.1| bll0480 [Bradyrhizobium japonicum USDA 110] Length = 329 Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust. Identities = 252/303 (83%), Positives = 268/303 (88%) Query: 26 MSLMKTYDGPVSDHFDGLHFFDPDGSPPKSLGEVLRWQFGGGRQRAVWPEWAPSPHADTP 85 MS MKTYDGP SDHF+GLHFFDPDG+PPK L EVLRWQF G RQRA WP+WAPSPHADTP Sbjct: 1 MSRMKTYDGPASDHFNGLHFFDPDGAPPKPLREVLRWQFSGKRQRAAWPDWAPSPHADTP 60 Query: 86 PPRVDGDRVRFCFVGHASWLIQTAGLNILFDPVWSMRASPFSFAGPKRHNDPGIAFEKLP 145 P RVDG + R FVGHASWLIQ GLNIL DPVWS R SP FAGPKRHNDPGIAFEKLP Sbjct: 61 PERVDGGKARLSFVGHASWLIQAGGLNILVDPVWSSRVSPVGFAGPKRHNDPGIAFEKLP 120 Query: 146 RIDVVLVSHGHYDHLDVATLSRLAGAFGSRVITPLGNDVTMRTSDAAIKAEAFDWHQRIE 205 +IDVVLVSHGHYDHLD+ATLSRLA F RV+TPLGNDVTMR++D++IKAEAFDWH R+E Sbjct: 121 KIDVVLVSHGHYDHLDIATLSRLAKNFAPRVVTPLGNDVTMRSTDSSIKAEAFDWHDRVE 180 Query: 206 LGNGLAATLVPTRHWSARGLFDRNKALWASFVLETPAGKLYIVGDSGYGDGGHFRRVAEA 265 LG G+A LVPTRHW+ARGLFDRNKALWASFVLETPAGK+Y+V DSGYGDG HFRRVAE Sbjct: 181 LGGGIAVHLVPTRHWTARGLFDRNKALWASFVLETPAGKIYVVCDSGYGDGRHFRRVAEK 240 Query: 266 HGPLRLAILPIGAYEPRWFMRDQHMNPEDAVKALADCGAAQALAHHHGTFQLTDEAIDAP 325 HGPLRLAILPIGAYEPRWFMRDQHMNPEDAVKAL DCGA AL HHHGTFQLTDEAIDAP Sbjct: 241 HGPLRLAILPIGAYEPRWFMRDQHMNPEDAVKALLDCGAQDALGHHHGTFQLTDEAIDAP 300 Query: 326 AIA 328 A A Sbjct: 301 AKA 303 >ref|YP_530112.1| twin-arginine translocation pathway signal [Rhodopseudomonas palustris BisB18] gb|ABD85793.1| Twin-arginine translocation pathway signal [Rhodopseudomonas palustris BisB18] Length = 351 Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust. Identities = 242/319 (75%), Positives = 264/319 (82%), Gaps = 2/319 (0%) Query: 23 SIWMSLMKTYDGPVSDHFDGLHFFDPDGSPPKSLGEVLRWQFGGGRQRAVWPEWAPSPHA 82 S W+S M Y GP+SDHFDG FFDPDG+PP+SL +VLRWQF R +A WP+WAPSP A Sbjct: 22 SFWISRMPNYQGPLSDHFDGTRFFDPDGAPPRSLVDVLRWQFK--RTQAKWPDWAPSPFA 79 Query: 83 DTPPPRVDGDRVRFCFVGHASWLIQTAGLNILFDPVWSMRASPFSFAGPKRHNDPGIAFE 142 DTPP RVDGD+VR FVGH SWLIQTAGLNIL DP+WS RASP SFAGPKRHN PGI FE Sbjct: 80 DTPPRRVDGDKVRLSFVGHVSWLIQTAGLNILVDPLWSERASPVSFAGPKRHNAPGIGFE 139 Query: 143 KLPRIDVVLVSHGHYDHLDVATLSRLAGAFGSRVITPLGNDVTMRTSDAAIKAEAFDWHQ 202 LP IDVVLVSHGHYDHLD+ TLS+LA RVITPLGND+TM + D AI+AEAFDWH Sbjct: 140 ALPPIDVVLVSHGHYDHLDLPTLSKLAAKHSPRVITPLGNDLTMTSHDKAIRAEAFDWHD 199 Query: 203 RIELGNGLAATLVPTRHWSARGLFDRNKALWASFVLETPAGKLYIVGDSGYGDGGHFRRV 262 R+ELG+G+A TLVPTRHW+ARGLFDRNKALWASFVL TPAG +YIV DSGYGDG HFRRV Sbjct: 200 RVELGDGVAVTLVPTRHWTARGLFDRNKALWASFVLHTPAGNIYIVCDSGYGDGKHFRRV 259 Query: 263 AEAHGPLRLAILPIGAYEPRWFMRDQHMNPEDAVKALADCGAAQALAHHHGTFQLTDEAI 322 AHGPLRLA+LPIGAYEPRWFM+DQHMNP DAVKALADCGAAQA+AHHHGTFQLTDEAI Sbjct: 260 GAAHGPLRLALLPIGAYEPRWFMQDQHMNPADAVKALADCGAAQAVAHHHGTFQLTDEAI 319 Query: 323 DAPAIAHRGARRGERAARE 341 DAP R A RE Sbjct: 320 DAPVEDLRAALDAAGTPRE 338 >ref|YP_779263.1| hypothetical protein RPE_0324 [Rhodopseudomonas palustris BisA53] gb|ABJ04283.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53] Length = 352 Score = 495 bits (1274), Expect = e-138, Method: Compositional matrix adjust. Identities = 244/330 (73%), Positives = 273/330 (82%), Gaps = 2/330 (0%) Query: 3 ITRRRLLATLTGAAAAIGVPSIWMSLMKTYDGPVSDHFDGLHFFDPDGSPPKSLGEVLRW 62 +TRRR++ G A A + S W S M++Y GPVSDHFDG F DPDG PPK + +VLRW Sbjct: 3 MTRRRVITVAAGLAGAAALSSFWNSSMRSYAGPVSDHFDGQRFVDPDGVPPKRISDVLRW 62 Query: 63 QFGGGRQRAVWPEWAPSPHADTPPPRVDGDRVRFCFVGHASWLIQTAGLNILFDPVWSMR 122 QF R+ A WPE APSP +DTPP RVDGDRVR FVGH +WLIQTAGLNIL DPVWS R Sbjct: 63 QFS--RKPAPWPEQAPSPFSDTPPSRVDGDRVRLSFVGHVTWLIQTAGLNILVDPVWSQR 120 Query: 123 ASPFSFAGPKRHNDPGIAFEKLPRIDVVLVSHGHYDHLDVATLSRLAGAFGSRVITPLGN 182 ASP +FAGP+R NDPGIAF+ LP IDVVLVSHGHYDHLD+ATLSRL A RV+TPLGN Sbjct: 121 ASPVNFAGPQRRNDPGIAFDALPPIDVVLVSHGHYDHLDLATLSRLTAACSPRVVTPLGN 180 Query: 183 DVTMRTSDAAIKAEAFDWHQRIELGNGLAATLVPTRHWSARGLFDRNKALWASFVLETPA 242 D+TM +SD++I+AEAFDWH R+ L + +A TLVPTRHW+ARGLFDRNKALWASFVL TPA Sbjct: 181 DLTMTSSDSSIRAEAFDWHHRVALNDRVAVTLVPTRHWNARGLFDRNKALWASFVLHTPA 240 Query: 243 GKLYIVGDSGYGDGGHFRRVAEAHGPLRLAILPIGAYEPRWFMRDQHMNPEDAVKALADC 302 G +YIV DSGYG+G HFRRVAEAH PL+LAILPIGAYEPRWFMRDQHMNPEDAVKA ADC Sbjct: 241 GNIYIVCDSGYGEGRHFRRVAEAHAPLKLAILPIGAYEPRWFMRDQHMNPEDAVKAFADC 300 Query: 303 GAAQALAHHHGTFQLTDEAIDAPAIAHRGA 332 GAAQALAHHHGTFQLTDEAIDAP A + A Sbjct: 301 GAAQALAHHHGTFQLTDEAIDAPRQALQAA 330 >ref|NP_945600.1| putative outer membrane protein [Rhodopseudomonas palustris CGA009] emb|CAE25691.1| putative outer membrane protein [Rhodopseudomonas palustris CGA009] Length = 353 Score = 491 bits (1265), Expect = e-137, Method: Compositional matrix adjust. Identities = 250/340 (73%), Positives = 279/340 (82%), Gaps = 2/340 (0%) Query: 2 LITRRRLLATLTGAAAAIGVPSIWMSLMKTYDGPVSDHFDGLHFFDPDGSPPKSLGEVLR 61 LITRRRLLAT G AA G+ S+W+S M Y GPV+DHFDG FFDPDG+PPK+ EV+R Sbjct: 3 LITRRRLLATAAGLAATAGLSSLWISRMSYYQGPVTDHFDGTRFFDPDGAPPKNFWEVMR 62 Query: 62 WQFGGGRQRAVWPEWAPSPHADTPPPRVDGDRVRFCFVGHASWLIQTAGLNILFDPVWSM 121 W+F + A WPEWAPSP ADTPPPRVDG VR +VGHASWLIQTAGLN+L DPVWS Sbjct: 63 WRFS--HKPAQWPEWAPSPFADTPPPRVDGAGVRLVYVGHASWLIQTAGLNVLIDPVWSE 120 Query: 122 RASPFSFAGPKRHNDPGIAFEKLPRIDVVLVSHGHYDHLDVATLSRLAGAFGSRVITPLG 181 R SP SFAGPKRHNDPGIAF+KLP IDVVLVSHGHYDHLD+ATLSRLA A RVITPLG Sbjct: 121 RVSPVSFAGPKRHNDPGIAFDKLPDIDVVLVSHGHYDHLDLATLSRLAAAHKPRVITPLG 180 Query: 182 NDVTMRTSDAAIKAEAFDWHQRIELGNGLAATLVPTRHWSARGLFDRNKALWASFVLETP 241 ND+TM D AI+AEA+DW R+ L + +A TLVPTRHW+ARGLFDRN+ALWASFVLETP Sbjct: 181 NDLTMTAHDDAIRAEAYDWSDRVALNDRVAVTLVPTRHWTARGLFDRNRALWASFVLETP 240 Query: 242 AGKLYIVGDSGYGDGGHFRRVAEAHGPLRLAILPIGAYEPRWFMRDQHMNPEDAVKALAD 301 AG++Y+V DSGYGDG HFRRV +AH PL+LAILPIGAYEPRWFM+DQHMNP DAVKALAD Sbjct: 241 AGRIYVVCDSGYGDGRHFRRVRDAHAPLKLAILPIGAYEPRWFMQDQHMNPADAVKALAD 300 Query: 302 CGAAQALAHHHGTFQLTDEAIDAPAIAHRGARRGERAARE 341 CGA +ALA+HHGTFQLTDEAIDAP A A E RE Sbjct: 301 CGAERALANHHGTFQLTDEAIDAPEQALYAALDAEGVPRE 340