BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0041.0002.p (238 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767119.1| hypothetical protein blr0479 [Bradyrhizobium ja... 290 2e-76 ref|YP_001202575.1| hypothetical protein BRADO0381 [Bradyrhizobi... 282 3e-74 ref|YP_530111.1| hypothetical protein RPC_0217 [Rhodopseudomonas... 270 2e-70 ref|ZP_01045440.1| hypothetical protein NB311A_15912 [Nitrobacte... 265 4e-69 ref|YP_779262.1| hypothetical protein RPE_0323 [Rhodopseudomonas... 262 3e-68 >ref|NP_767119.1| hypothetical protein blr0479 [Bradyrhizobium japonicum USDA 110] dbj|BAC45744.1| blr0479 [Bradyrhizobium japonicum USDA 110] Length = 236 Score = 290 bits (741), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 155/229 (67%), Positives = 188/229 (82%), Gaps = 5/229 (2%) Query: 9 ATLIATTLLAAPVLANDDFPPAISVTGEATVSAPPDQAQLDAGVTTDAKTAREAADANNV 68 A + A TLLA PVLA DDFP AISV+GEATVS PD AQ+DAGV DAKTA+EA+DANN Sbjct: 11 AAVFAATLLATPVLA-DDFPSAISVSGEATVSVAPDLAQIDAGVANDAKTAKEASDANNA 69 Query: 69 TMGKVLAALKGAGIAEKDFQTSRLSLQPQFANRGPSSPSAPPSIIGYHASNRVTIRLHDV 128 MGKVL ALKGAGIAEKD+QTSRLSLQPQ+ G + + ++G+ ASNRVT+++ DV Sbjct: 70 AMGKVLLALKGAGIAEKDYQTSRLSLQPQY---GQNKSTGASPVVGFRASNRVTVKIRDV 126 Query: 129 SKVASVIDVLVGAGANDIGGLNFSVSQASKLLDDAREKAIADARRKAEIYAKAAGVTLGA 188 +K+A +ID LV AGANDIG ++F V+QASKLLDDARE+A+ADARRKAEIYAKA GVTLGA Sbjct: 127 TKIAGIIDTLVSAGANDIGNISFEVTQASKLLDDAREQAVADARRKAEIYAKATGVTLGA 186 Query: 189 PVNIAEVGSAPVPVFRPKMATAGFAAPTPVAQGEETLTVNVSVSWAIKE 237 P++++E G APVP+F+ +MATA AAP VA GEETL+V V+VSWAIK+ Sbjct: 187 PLSVSE-GGAPVPLFKARMATAPMAAPAAVAPGEETLSVTVNVSWAIKQ 234 >ref|YP_001202575.1| hypothetical protein BRADO0381 [Bradyrhizobium sp. ORS 278] emb|CAL74329.1| conserved hypothetical protein; putative secreted protein [Bradyrhizobium sp. ORS 278] Length = 237 Score = 282 bits (722), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 155/241 (64%), Positives = 184/241 (76%), Gaps = 12/241 (4%) Query: 1 MTHRLPFAATLIATTLLAAPVLAND---DFPPAISVTGEATVSAPPDQAQLDAGVTTDAK 57 M R A ++A+ L P LA+D PAI+V+GE +V APPD AQ+DAGV +DAK Sbjct: 1 MMLRPLLVAAMMASAAL--PALADDIARQDTPAITVSGEGSVQAPPDLAQIDAGVASDAK 58 Query: 58 TAREAADANNVTMGKVLAALKGAGIAEKDFQTSRLSLQPQFANRGPSSPSAPPSIIGYHA 117 TAREAA+ANNV M KVL +LK AGIA+KD QTSRLSLQPQ+A P P+ + GY A Sbjct: 59 TAREAAEANNVAMAKVLQSLKTAGIADKDVQTSRLSLQPQYAQNRPGQPA----VTGYRA 114 Query: 118 SNRVTIRLHDVSKVASVIDVLVGAGANDIGGLNFSVSQASKLLDDAREKAIADARRKAEI 177 SNRVTI++HD++KVA+VID +V AGAND+G + FSV++ SKLLD AREKA+ADARRKAEI Sbjct: 115 SNRVTIKVHDIAKVANVIDTVVAAGANDVGNVFFSVAEPSKLLDQAREKAVADARRKAEI 174 Query: 178 YAKAAGVTLGAPVNIAEVGSAPVPVFRPKMATAGFA--APTPVAQGEETLTVNVSVSWAI 235 YAKAAGVTLG P+NIAE G AP PVFR K A A APTPVAQGEETL+V VSV+WAI Sbjct: 175 YAKAAGVTLGQPLNIAEDG-APTPVFRAKTFAAPMAAGAPTPVAQGEETLSVTVSVTWAI 233 Query: 236 K 236 K Sbjct: 234 K 234 >ref|YP_530111.1| hypothetical protein RPC_0217 [Rhodopseudomonas palustris BisB18] gb|ABD85792.1| protein of unknown function DUF541 [Rhodopseudomonas palustris BisB18] Length = 237 Score = 270 bits (689), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 149/229 (65%), Positives = 181/229 (79%), Gaps = 8/229 (3%) Query: 11 LIATTLLAA---PVLANDDFPPAISVTGEATVSAPPDQAQLDAGVTTDAKTAREAADANN 67 LI T LAA P LA+ PPA+SVTGEA+VS PPD A +D GVTT+AKTAREA+DANN Sbjct: 10 LIGLTALAALTVPALADSIPPPAVSVTGEASVSVPPDLASVDGGVTTEAKTAREASDANN 69 Query: 68 VTMGKVLAALKGAGIAEKDFQTSRLSLQPQFANRGPSSPSAPPSIIGYHASNRVTIRLHD 127 V MGKVL ALKGAG+ +KD QTSRLSLQPQ+AN+ P+ ++GY A+NR+TIRL D Sbjct: 70 VAMGKVLLALKGAGLEDKDLQTSRLSLQPQYANQNRPGPNV---VVGYRATNRITIRLRD 126 Query: 128 VSKVASVIDVLVGAGANDIGGLNFSVSQASKLLDDAREKAIADARRKAEIYAKAAGVTLG 187 VSKVASVID LV +GAN++GG++F+V+ ASKLLD+AR++A ADARRKAEIYA+AAGV LG Sbjct: 127 VSKVASVIDTLVSSGANEVGGIDFAVAAASKLLDEARDQAFADARRKAEIYARAAGVALG 186 Query: 188 APVNIAEVGSAPVPVFRPKMATAGFAAPTPVAQGEETLTVNVSVSWAIK 236 AP++I+E SAP P+ KM AA PVA GEETL V+VSVS+AIK Sbjct: 187 APLSISE-DSAPGPMPMRKMML-DRAASAPVAPGEETLRVSVSVSFAIK 233 >ref|ZP_01045440.1| hypothetical protein NB311A_15912 [Nitrobacter sp. Nb-311A] gb|EAQ36768.1| hypothetical protein NB311A_15912 [Nitrobacter sp. Nb-311A] Length = 238 Score = 265 bits (677), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 150/238 (63%), Positives = 177/238 (74%), Gaps = 9/238 (3%) Query: 1 MTHRLPFA-ATLIATTLLAAPVLANDDFPPAISVTGEATVSAPPDQAQLDAGVTTDAKTA 59 M +R+ A A L++ P A D PP ISVTGEAT+SAPPD A+++AGVTTDAKTA Sbjct: 5 MQNRITLAIAVATVAALISRPAQA-DAPPPTISVTGEATISAPPDLAEIEAGVTTDAKTA 63 Query: 60 REAADANNVTMGKVLAALKGAGIAEKDFQTSRLSLQPQFANRGPSSPSAPPSIIGYHASN 119 REA++ANN M KVLAALK AGIAEKD+QTSRLSLQPQ+ N+ S PS + GY A+N Sbjct: 64 REASEANNAAMSKVLAALKSAGIAEKDYQTSRLSLQPQYTNQNRSGPSV---LSGYRATN 120 Query: 120 RVTIRLHDVSKVASVIDVLVGAGANDIGGLNFSVSQASKLLDDAREKAIADARRKAEIYA 179 R+T++L D++K+A VID + AGANDIGG+NF+VS ASKLLD AR +AIADARRKAEIYA Sbjct: 121 RITVKLRDIAKMAGVIDAVTAAGANDIGGINFTVSNASKLLDHARAEAIADARRKAEIYA 180 Query: 180 KAAGVTLGAPVNIAEVGSA-PVPVFRPKMATAGFAAPTPVAQGEETLTVNVSVSWAIK 236 KAAGV+LGAPV+IAE GSA PV R A AA P GEETL V V VSW IK Sbjct: 181 KAAGVSLGAPVSIAEHGSAVPVLYRRAAAPMAAEAAIAP---GEETLRVTVGVSWEIK 235 >ref|YP_779262.1| hypothetical protein RPE_0323 [Rhodopseudomonas palustris BisA53] gb|ABJ04282.1| protein of unknown function DUF541 [Rhodopseudomonas palustris BisA53] Length = 236 Score = 262 bits (670), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 146/210 (69%), Positives = 171/210 (81%), Gaps = 6/210 (2%) Query: 28 PPAISVTGEATVSAPPDQAQLDAGVTTDAKTAREAADANNVTMGKVLAALKGAGIAEKDF 87 PPAISVTGEA+VS PPD A +D GV++DAKTAREAA+ANN M KVLAALK AGI +KD Sbjct: 29 PPAISVTGEASVSVPPDLATVDGGVSSDAKTAREAAEANNAAMTKVLAALKAAGIEDKDL 88 Query: 88 QTSRLSLQPQFANRGPSSPSAPPSIIGYHASNRVTIRLHDVSKVASVIDVLVGAGANDIG 147 QTSRLSL PQ+AN S+ P ++ GY ASNRVT+RL DVSK+ASV+D LVGAGAN+IG Sbjct: 89 QTSRLSLLPQYAN---SNRPGPNTLTGYRASNRVTVRLRDVSKMASVVDTLVGAGANEIG 145 Query: 148 GLNFSVSQASKLLDDAREKAIADARRKAEIYAKAAGVTLGAPVNIAEVGS-APVPVFRPK 206 G+NF+V+ ASKLLDDAREKAIADARRKAEIYA+A GVTLGAP+ I+E + P+P +R Sbjct: 146 GINFTVAAASKLLDDAREKAIADARRKAEIYARAVGVTLGAPLGISEESTPGPMPYYR-- 203 Query: 207 MATAGFAAPTPVAQGEETLTVNVSVSWAIK 236 TA AA PVAQGEETL++ VSVSWAIK Sbjct: 204 KTTASLAASAPVAQGEETLSITVSVSWAIK 233