BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0040.0012.p (262 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAU21397.1| D-3-hydroxybutyrate dehydrogenase [uncultured soi... 486 e-135 ref|ZP_08628448.1| D-beta-hydroxybutyrate dehydrogenase [Bradyrh... 477 e-133 ref|YP_578743.1| 3-hydroxybutyrate dehydrogenase [Nitrobacter ha... 475 e-132 ref|ZP_07025448.1| 3-hydroxybutyrate dehydrogenase [Afipia sp. 1... 475 e-132 ref|YP_001203226.1| D-beta-hydroxybutyrate dehydrogenase [Bradyr... 473 e-131 >gb|AAU21397.1| D-3-hydroxybutyrate dehydrogenase [uncultured soil bacterium] Length = 262 Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust. Identities = 238/261 (91%), Positives = 248/261 (95%) Query: 1 MGTLTGKTAVVTGSTSGIGLAYARAFAGAGANIVLNGMGVPADIEKERSGIETDFKVKAV 60 MGTLTGKTAVVTGSTSGIGLA ARAFAGAGANIV+NG G PADIE+ERSGIETDFKVKAV Sbjct: 1 MGTLTGKTAVVTGSTSGIGLAIARAFAGAGANIVINGFGAPADIERERSGIETDFKVKAV 60 Query: 61 HSPADMTKPAEIADMIALGEKTFGSVDILVNNAGIQFVSPIEEFPPEKWEAIIAINLSSA 120 HS ADM+KPAEIA+MIALGEKTFGSVDILVNNAGIQFVSPIEEFP EKW+AIIAINLSSA Sbjct: 61 HSAADMSKPAEIAEMIALGEKTFGSVDILVNNAGIQFVSPIEEFPIEKWDAIIAINLSSA 120 Query: 121 FYGIRAAVPGMKKRGWGRIINTASAHSLVASPFKSAYVSAKHGIAGLTKTVALELAQHKI 180 F+ IRAAVPGMKKRGWGRIINTASAHSLVASPFKSAYVSAKHGIAGLTKTVALELA HKI Sbjct: 121 FHAIRAAVPGMKKRGWGRIINTASAHSLVASPFKSAYVSAKHGIAGLTKTVALELATHKI 180 Query: 181 TCNCISPGYVWTPLVEHQIPETMKARNMTKEQVIKDVLLAAQPTKEFVTSDQVAALALFL 240 TCNCISPGYVWTPLVE QIP+TMKARN+TKEQVI DVLL AQPTKEFVTS+QVAALALFL Sbjct: 181 TCNCISPGYVWTPLVEKQIPDTMKARNLTKEQVIHDVLLEAQPTKEFVTSEQVAALALFL 240 Query: 241 CSDDAAQITGSNYSIDGGWTA 261 C DAAQITG+N SIDGGWTA Sbjct: 241 CGADAAQITGTNLSIDGGWTA 261 >ref|ZP_08628448.1| D-beta-hydroxybutyrate dehydrogenase [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08951.1| D-beta-hydroxybutyrate dehydrogenase [Bradyrhizobiaceae bacterium SG-6C] Length = 262 Score = 477 bits (1227), Expect = e-133, Method: Compositional matrix adjust. Identities = 232/261 (88%), Positives = 244/261 (93%) Query: 1 MGTLTGKTAVVTGSTSGIGLAYARAFAGAGANIVLNGMGVPADIEKERSGIETDFKVKAV 60 MGTL+GKTAVVTGSTSGIGLAYARAFA AGAN+V+NG G PADIEKERS IE+DFKVKA Sbjct: 1 MGTLSGKTAVVTGSTSGIGLAYARAFASAGANVVINGFGTPADIEKERSKIESDFKVKAA 60 Query: 61 HSPADMTKPAEIADMIALGEKTFGSVDILVNNAGIQFVSPIEEFPPEKWEAIIAINLSSA 120 +SPADMTKPAEIA MI LGEKTFGSVDILVNNAGIQFVSPIE+FP EKW+AIIAINLSSA Sbjct: 61 YSPADMTKPAEIAGMIELGEKTFGSVDILVNNAGIQFVSPIEDFPIEKWDAIIAINLSSA 120 Query: 121 FYGIRAAVPGMKKRGWGRIINTASAHSLVASPFKSAYVSAKHGIAGLTKTVALELAQHKI 180 F+ IRAAVPGMKKR WGRIINTASAHSLVASPFKSAYVSAKHGIAGLTKTVALE+A HKI Sbjct: 121 FHAIRAAVPGMKKRSWGRIINTASAHSLVASPFKSAYVSAKHGIAGLTKTVALEVATHKI 180 Query: 181 TCNCISPGYVWTPLVEHQIPETMKARNMTKEQVIKDVLLAAQPTKEFVTSDQVAALALFL 240 TCNCISPGYVWTPLVE QIP+TMKARNMTKEQVI DVLL AQPTKEFVT +QVAALALFL Sbjct: 181 TCNCISPGYVWTPLVEKQIPDTMKARNMTKEQVINDVLLDAQPTKEFVTVEQVAALALFL 240 Query: 241 CSDDAAQITGSNYSIDGGWTA 261 C DDAAQITG+N SIDGGWTA Sbjct: 241 CGDDAAQITGANLSIDGGWTA 261 >ref|YP_578743.1| 3-hydroxybutyrate dehydrogenase [Nitrobacter hamburgensis X14] gb|ABE64283.1| 3-hydroxybutyrate dehydrogenase [Nitrobacter hamburgensis X14] Length = 262 Score = 475 bits (1223), Expect = e-132, Method: Compositional matrix adjust. Identities = 231/262 (88%), Positives = 243/262 (92%) Query: 1 MGTLTGKTAVVTGSTSGIGLAYARAFAGAGANIVLNGMGVPADIEKERSGIETDFKVKAV 60 M L GKTAVVTGSTSGIGLAYARAFA AGANIV+NG G PADIEKERS IE +FKV+AV Sbjct: 1 MTNLKGKTAVVTGSTSGIGLAYARAFASAGANIVINGFGAPADIEKERSAIEAEFKVRAV 60 Query: 61 HSPADMTKPAEIADMIALGEKTFGSVDILVNNAGIQFVSPIEEFPPEKWEAIIAINLSSA 120 HSPADMTKPAEIA MIALGE TFGSVDILVNNAGIQFV+P+EEFP EKW+AIIAINLSSA Sbjct: 61 HSPADMTKPAEIAGMIALGETTFGSVDILVNNAGIQFVAPVEEFPIEKWDAIIAINLSSA 120 Query: 121 FYGIRAAVPGMKKRGWGRIINTASAHSLVASPFKSAYVSAKHGIAGLTKTVALELAQHKI 180 F+ IRAAVPGMK RGWGRIINTASAHSLVASPFKSAYVSAKHGIAGLTKTVALELA HKI Sbjct: 121 FHAIRAAVPGMKTRGWGRIINTASAHSLVASPFKSAYVSAKHGIAGLTKTVALELAAHKI 180 Query: 181 TCNCISPGYVWTPLVEHQIPETMKARNMTKEQVIKDVLLAAQPTKEFVTSDQVAALALFL 240 TCNCISPGYVWTPLVE QIP+TMKAR+MTKEQVI DVLLAAQPTK+FVT +QVAALALFL Sbjct: 181 TCNCISPGYVWTPLVEKQIPDTMKARDMTKEQVINDVLLAAQPTKQFVTVEQVAALALFL 240 Query: 241 CSDDAAQITGSNYSIDGGWTAE 262 C DDA+QITGSN SIDGGWTAE Sbjct: 241 CGDDASQITGSNLSIDGGWTAE 262 >ref|ZP_07025448.1| 3-hydroxybutyrate dehydrogenase [Afipia sp. 1NLS2] gb|EFI52590.1| 3-hydroxybutyrate dehydrogenase [Afipia sp. 1NLS2] Length = 262 Score = 475 bits (1223), Expect = e-132, Method: Compositional matrix adjust. Identities = 229/261 (87%), Positives = 245/261 (93%) Query: 1 MGTLTGKTAVVTGSTSGIGLAYARAFAGAGANIVLNGMGVPADIEKERSGIETDFKVKAV 60 MG+L GK AV+TGSTSGIGLAYARA A AGANIVLNGMG PADIEKERSGIE++F VKAV Sbjct: 1 MGSLAGKAAVITGSTSGIGLAYARALAKAGANIVLNGMGEPADIEKERSGIESEFGVKAV 60 Query: 61 HSPADMTKPAEIADMIALGEKTFGSVDILVNNAGIQFVSPIEEFPPEKWEAIIAINLSSA 120 HSPADMT+PAEI MIALGEKTFGSVDIL+NNAGIQFVSP+EEFPPEKW+AIIAINLSSA Sbjct: 61 HSPADMTRPAEIEQMIALGEKTFGSVDILINNAGIQFVSPVEEFPPEKWDAIIAINLSSA 120 Query: 121 FYGIRAAVPGMKKRGWGRIINTASAHSLVASPFKSAYVSAKHGIAGLTKTVALELAQHKI 180 F+ IRAAVPGMKKRGWGRIINTASAHSLVASPFKSAYV+AKHGIAGLTKTVALELA KI Sbjct: 121 FHAIRAAVPGMKKRGWGRIINTASAHSLVASPFKSAYVAAKHGIAGLTKTVALELATFKI 180 Query: 181 TCNCISPGYVWTPLVEHQIPETMKARNMTKEQVIKDVLLAAQPTKEFVTSDQVAALALFL 240 TCN ISPGYVWTPLVE QIP+TMKARNMTKEQVIKDV+L AQPTKEFVTS+QVAALA++L Sbjct: 181 TCNAISPGYVWTPLVEKQIPDTMKARNMTKEQVIKDVMLQAQPTKEFVTSEQVAALAVYL 240 Query: 241 CSDDAAQITGSNYSIDGGWTA 261 C DDAAQITG+N SIDGGWTA Sbjct: 241 CGDDAAQITGANLSIDGGWTA 261 >ref|YP_001203226.1| D-beta-hydroxybutyrate dehydrogenase [Bradyrhizobium sp. ORS 278] emb|CAL74989.1| D-beta-hydroxybutyrate dehydrogenase (BDH) (3-hydroxybutyrate dehydrogenase) (3-HBDH) [Bradyrhizobium sp. ORS 278] Length = 263 Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust. Identities = 230/259 (88%), Positives = 241/259 (93%) Query: 4 LTGKTAVVTGSTSGIGLAYARAFAGAGANIVLNGMGVPADIEKERSGIETDFKVKAVHSP 63 L GKTAVVTGSTSGIGLA AR FA AGANIVLNG G P DIEKER+ IE++FKVKAVHSP Sbjct: 5 LKGKTAVVTGSTSGIGLAIARGFASAGANIVLNGFGAPDDIEKERASIESEFKVKAVHSP 64 Query: 64 ADMTKPAEIADMIALGEKTFGSVDILVNNAGIQFVSPIEEFPPEKWEAIIAINLSSAFYG 123 ADM+KPAEIA MIALGE TFGSVD+LVNNAGIQFVSP+E+FPPEKWE IIAINLSSAFYG Sbjct: 65 ADMSKPAEIAGMIALGESTFGSVDVLVNNAGIQFVSPVEDFPPEKWEQIIAINLSSAFYG 124 Query: 124 IRAAVPGMKKRGWGRIINTASAHSLVASPFKSAYVSAKHGIAGLTKTVALELAQHKITCN 183 I AAVPGMKKRGWGRIINTASAHSLVASPFKSAYVSAKHGIAGLTKTVALELA KITCN Sbjct: 125 IHAAVPGMKKRGWGRIINTASAHSLVASPFKSAYVSAKHGIAGLTKTVALELATFKITCN 184 Query: 184 CISPGYVWTPLVEHQIPETMKARNMTKEQVIKDVLLAAQPTKEFVTSDQVAALALFLCSD 243 CISPGYVWTPLVE QIP+TMKARN+TKEQVI DVLLAAQPTKEFVT DQVAALALFLCSD Sbjct: 185 CISPGYVWTPLVEKQIPDTMKARNLTKEQVIHDVLLAAQPTKEFVTVDQVAALALFLCSD 244 Query: 244 DAAQITGSNYSIDGGWTAE 262 +AAQITG+N SIDGGWTAE Sbjct: 245 EAAQITGTNLSIDGGWTAE 263