BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0040.0008.p (462 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_768130.1| hypothetical protein bll1490 [Bradyrhizobium ja... 676 0.0 ref|ZP_01045415.1| Polysaccharide biosynthesis protein [Nitrobac... 652 0.0 ref|YP_783031.1| polysaccharide biosynthesis protein [Rhodopseud... 634 e-180 ref|YP_578742.1| polysaccharide biosynthesis protein [Nitrobacte... 634 e-179 ref|YP_319359.1| polysaccharide biosynthesis protein [Nitrobacte... 633 e-179 >ref|NP_768130.1| hypothetical protein bll1490 [Bradyrhizobium japonicum USDA 110] dbj|BAC46755.1| bll1490 [Bradyrhizobium japonicum USDA 110] Length = 464 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/458 (72%), Positives = 388/458 (84%), Gaps = 4/458 (0%) Query: 1 LAVMETQSATSAPLGRVARLRDLAARALGGTKEASVTKRLAGMIFAIRVISAAIAYLAQI 60 LAVM+ Q AT+ P G +ARLR AR GG+ EAS+T+RLAG IF IRVISA +AY +Q+ Sbjct: 10 LAVMDAQPATTGPDGLIARLR---ARLSGGSSEASLTRRLAGTIFIIRVISAGLAYFSQV 66 Query: 61 LLARWMSGSDYGIYVYVWTWVLLLGSTMDFGIAPSAQKIIPEYRARGDLAALRGFLSGGR 120 LLARWM SDYGIYVYVWTWVLLLGS MDFGI+ SAQKIIPEYR G+ A LRGFLSG R Sbjct: 67 LLARWMGTSDYGIYVYVWTWVLLLGSMMDFGISASAQKIIPEYRTGGEHALLRGFLSGSR 126 Query: 121 WVVLATSSMVALLLAGLIHLASPWIDPNAVVPLYIGCLTLPPFVVANTQDGISRAHDWMQ 180 W+ A S++V+L LAG++ L SPWIDP +PLYIGC+TLP FVVANTQDGI+R+HDWMQ Sbjct: 127 WLTFAVSALVSLGLAGIVRLLSPWIDPAEALPLYIGCMTLPAFVVANTQDGIARSHDWMQ 186 Query: 181 LGLMPQFIVRQGLIIALTAGALALGLNLGATAAMIASAAAVYIAAIGQMVVLNRRLTAHL 240 LGLMPQFI+RQ LII +TA A LG ++GA AAM+AS AV+IA GQMVVLNR+L ++ Sbjct: 187 LGLMPQFIIRQALIIGITASAFLLGYHIGAVAAMVASLGAVWIAMTGQMVVLNRKLAGYI 246 Query: 241 GVGEKSYDVKGWFAISLPIMLVESFYLLLGYTDVLMLQQFRSPEEVGIYFAVVKTLALVS 300 G K+YD+ GW A+SLPI+LVESFYLLL YTDVL+LQQFR +EVG+YFAVVKTLALVS Sbjct: 247 EPGPKAYDIGGWLAVSLPILLVESFYLLLSYTDVLVLQQFRPSDEVGVYFAVVKTLALVS 306 Query: 301 FVHYAMAATTAHRFAEYNAIGDKDRLSAYVAHAISWTFWPSLLATVALLAFGKPLLWLFG 360 F+HYAM+ATTAHRFAEYNA GDK RLSAYVAHAI+WTFWPSL AT+ LLAFGKPLLWLFG Sbjct: 307 FIHYAMSATTAHRFAEYNASGDKARLSAYVAHAINWTFWPSLAATILLLAFGKPLLWLFG 366 Query: 361 PKFVDGYSIMFVAAIGLVVRSAIGPVERLLNMLGHQSICATAYAVSFLMNVGLCIALVPR 420 P+F GY IMFVAAIGLVVR+AIGPVERLLNMLG Q ICA AYA++F+MNV LC+ALVPR Sbjct: 367 PQFTVGYDIMFVAAIGLVVRAAIGPVERLLNMLGQQKICALAYALAFVMNVVLCVALVPR 426 Query: 421 YGGMG-GASTSLSLTFETILLFYVVRSRLGLHVLAFGR 457 +GG G A+TS+SL+FET+LLF++VR RLGLHVLAFG+ Sbjct: 427 FGGHGAAAATSISLSFETVLLFWIVRQRLGLHVLAFGK 464 >ref|ZP_01045415.1| Polysaccharide biosynthesis protein [Nitrobacter sp. Nb-311A] gb|EAQ36743.1| Polysaccharide biosynthesis protein [Nitrobacter sp. Nb-311A] Length = 456 Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/431 (74%), Positives = 369/431 (85%), Gaps = 1/431 (0%) Query: 29 GGTKEASVTKRLAGMIFAIRVISAAIAYLAQILLARWMSGSDYGIYVYVWTWVLLLGSTM 88 GG+ EAS+TKRLAG IF IRVISA +AY+AQILLARWM GSDYG+YVYVWTWVLLLGS M Sbjct: 25 GGSSEASLTKRLAGTIFIIRVISAGLAYVAQILLARWMGGSDYGVYVYVWTWVLLLGSMM 84 Query: 89 DFGIAPSAQKIIPEYRARGDLAALRGFLSGGRWVVLATSSMVALLLAGLIHLASPWIDPN 148 DFGI+ SAQKIIPEYRA GD LRGFLSG RW+ +S++++LLA L+ SPWID Sbjct: 85 DFGISASAQKIIPEYRASGDDERLRGFLSGSRWMTFIVASLISILLAALVKALSPWIDAA 144 Query: 149 AVVPLYIGCLTLPPFVVANTQDGISRAHDWMQLGLMPQFIVRQGLIIALTAGALALGLNL 208 VVPLYIGCLTLP FVVANTQDGI+R+HDWM+LGLMPQFIVRQ LII TAGA LG +L Sbjct: 145 TVVPLYIGCLTLPAFVVANTQDGIARSHDWMRLGLMPQFIVRQSLIIGFTAGAFVLGFHL 204 Query: 209 GATAAMIASAAAVYIAAIGQMVVLNRRLTAHLGVGEKSYDVKGWFAISLPIMLVESFYLL 268 AT AM+AS AAV+IA IGQM++LNRRL + G K +D +GW ++SLPI+LVESFYLL Sbjct: 205 NATVAMLASVAAVWIAMIGQMIILNRRLGKIIASGAKVHDFRGWLSVSLPILLVESFYLL 264 Query: 269 LGYTDVLMLQQFRSPEEVGIYFAVVKTLALVSFVHYAMAATTAHRFAEYNAIGDKDRLSA 328 L YTDVL+LQQFRS EEVG+YFAVVKTLALVSF+HYAM+ATTAHRF EY+A GD++RL+A Sbjct: 265 LSYTDVLVLQQFRSSEEVGVYFAVVKTLALVSFIHYAMSATTAHRFTEYHAAGDRERLAA 324 Query: 329 YVAHAISWTFWPSLLATVALLAFGKPLLWLFGPKFVDGYSIMFVAAIGLVVRSAIGPVER 388 Y+AHAI WTFWPSL AT+ LLAFGKP+LWLFGP+FV GYSIMFVAAIGLVVRSAIGPVER Sbjct: 325 YLAHAIKWTFWPSLAATLLLLAFGKPMLWLFGPQFVTGYSIMFVAAIGLVVRSAIGPVER 384 Query: 389 LLNMLGHQSICATAYAVSFLMNVGLCIALVPRYGGMG-GASTSLSLTFETILLFYVVRSR 447 LLNMLGHQ CA+AYA++F MNV LC A VPRYGG G A+TS+SL FET+LLF++VR R Sbjct: 385 LLNMLGHQHACASAYALAFGMNVALCFAFVPRYGGHGAAAATSISLAFETVLLFWIVRRR 444 Query: 448 LGLHVLAFGRR 458 LGLHVLAFG++ Sbjct: 445 LGLHVLAFGKK 455 >ref|YP_783031.1| polysaccharide biosynthesis protein [Rhodopseudomonas palustris BisA53] gb|ABJ08051.1| polysaccharide biosynthesis protein [Rhodopseudomonas palustris BisA53] Length = 461 Score = 634 bits (1636), Expect = e-180, Method: Compositional matrix adjust. Identities = 316/459 (68%), Positives = 377/459 (82%), Gaps = 2/459 (0%) Query: 1 LAVMETQSATSAPLGRVAR-LRDLAARALGGTKEASVTKRLAGMIFAIRVISAAIAYLAQ 59 +A+ME + AT+ R LR L + EA++T RLAG+IF IRVISAA+AYL+Q Sbjct: 1 MALMEAEPATAKSTESPLRALRGKLRAMLSASDEAALTNRLAGIIFLIRVISAALAYLSQ 60 Query: 60 ILLARWMSGSDYGIYVYVWTWVLLLGSTMDFGIAPSAQKIIPEYRARGDLAALRGFLSGG 119 ILLARWM G+DYGIYVYVWTWVLLLGS +DFG+A SAQKIIPE RA D A LRGFLSG Sbjct: 61 ILLARWMGGTDYGIYVYVWTWVLLLGSMLDFGLAMSAQKIIPECRAAHDHATLRGFLSGS 120 Query: 120 RWVVLATSSMVALLLAGLIHLASPWIDPNAVVPLYIGCLTLPPFVVANTQDGISRAHDWM 179 RW LA SS++ALLLAGL+ + SP +DP ++VPLY+GCLTLP FVVAN QDGI+R+HDWM Sbjct: 121 RWATLAASSVMALLLAGLVRVVSPSLDPASIVPLYLGCLTLPAFVVANMQDGIARSHDWM 180 Query: 180 QLGLMPQFIVRQGLIIALTAGALALGLNLGATAAMIASAAAVYIAAIGQMVVLNRRLTAH 239 +LGLMPQFIVRQ LI+ TAGA+ALG LGATAAM+AS AAV+IA IGQ++VLNRRL Sbjct: 181 RLGLMPQFIVRQSLIVGFTAGAVALGFQLGATAAMLASLAAVWIAMIGQLLVLNRRLRGV 240 Query: 240 LGVGEKSYDVKGWFAISLPIMLVESFYLLLGYTDVLMLQQFRSPEEVGIYFAVVKTLALV 299 + G K+YD WF ISLPI++VE FYLLL Y DVL+LQQFRS EEVGIY+AV+KTLALV Sbjct: 241 VEAGPKTYDFGNWFKISLPILMVEGFYLLLSYCDVLVLQQFRSAEEVGIYYAVIKTLALV 300 Query: 300 SFVHYAMAATTAHRFAEYNAIGDKDRLSAYVAHAISWTFWPSLLATVALLAFGKPLLWLF 359 SF+HYA++ATTAHRF EY A GD RLSAYVAH+I WTFWPSL AT+ LLA G+PLLWLF Sbjct: 301 SFIHYAISATTAHRFTEYYASGDTARLSAYVAHSIKWTFWPSLAATIVLLALGQPLLWLF 360 Query: 360 GPKFVDGYSIMFVAAIGLVVRSAIGPVERLLNMLGHQSICATAYAVSFLMNVGLCIALVP 419 GP+FV GY IMF+AAIGL+VR+AIGPVERLLNM+G Q ICA AYA++F++N+ LCIALVP Sbjct: 361 GPQFVAGYDIMFIAAIGLLVRAAIGPVERLLNMVGQQKICALAYALAFVINLVLCIALVP 420 Query: 420 RYGGMG-GASTSLSLTFETILLFYVVRSRLGLHVLAFGR 457 R+GG G A+TS++L FET+LLF+V R RLGL +LAFG+ Sbjct: 421 RFGGHGAAAATSIALVFETVLLFFVTRRRLGLRMLAFGK 459 >ref|YP_578742.1| polysaccharide biosynthesis protein [Nitrobacter hamburgensis X14] gb|ABE64282.1| polysaccharide biosynthesis protein [Nitrobacter hamburgensis X14] Length = 458 Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust. Identities = 325/461 (70%), Positives = 381/461 (82%), Gaps = 6/461 (1%) Query: 1 LAVMETQSATSAPL-GRVARLRDLAARALGGTKEASVTKRLAGMIFAIRVISAAIAYLAQ 59 +AV +T +A + L G + RLR L G+ EAS+T RLAG IF IRVISA +AY+AQ Sbjct: 1 MAVTDTPTAPARRLSGLIGRLRA----TLAGSNEASLTNRLAGTIFIIRVISAGLAYVAQ 56 Query: 60 ILLARWMSGSDYGIYVYVWTWVLLLGSTMDFGIAPSAQKIIPEYRARGDLAALRGFLSGG 119 ILLARWM GSDYG+YVYVWTWVLLLGS MDFGI+ SAQKIIPEYRA GD A LRGFLSG Sbjct: 57 ILLARWMGGSDYGVYVYVWTWVLLLGSMMDFGISASAQKIIPEYRASGDDARLRGFLSGS 116 Query: 120 RWVVLATSSMVALLLAGLIHLASPWIDPNAVVPLYIGCLTLPPFVVANTQDGISRAHDWM 179 RW+ ++++++LLA L+ + SPWIDP V+PLYIGCLTLP FVVANTQDGI+R+HDWM Sbjct: 117 RWMTFIVAALISILLAALVRVLSPWIDPATVLPLYIGCLTLPAFVVANTQDGIARSHDWM 176 Query: 180 QLGLMPQFIVRQGLIIALTAGALALGLNLGATAAMIASAAAVYIAAIGQMVVLNRRLTAH 239 +LGLMPQFIVRQ LII TAGA LG +L A AM+AS AAV+IA IGQM+VLNR+L Sbjct: 177 RLGLMPQFIVRQSLIIGFTAGAFVLGFHLSAAIAMLASVAAVWIAMIGQMIVLNRKLGTS 236 Query: 240 LGVGEKSYDVKGWFAISLPIMLVESFYLLLGYTDVLMLQQFRSPEEVGIYFAVVKTLALV 299 + G K +D + W A+SLPI+LVESFYLLL YTDVL+LQQFR +EVG+YFAVVKTLALV Sbjct: 237 VAAGPKVHDFRAWLAVSLPILLVESFYLLLSYTDVLVLQQFRPSDEVGVYFAVVKTLALV 296 Query: 300 SFVHYAMAATTAHRFAEYNAIGDKDRLSAYVAHAISWTFWPSLLATVALLAFGKPLLWLF 359 SF+HYAM+ATTAHRF EY+A GDK+RL+AYVAHAI WTFWPSL AT+ LLA GKP+LWLF Sbjct: 297 SFIHYAMSATTAHRFTEYHAAGDKERLAAYVAHAIKWTFWPSLAATLLLLALGKPMLWLF 356 Query: 360 GPKFVDGYSIMFVAAIGLVVRSAIGPVERLLNMLGHQSICATAYAVSFLMNVGLCIALVP 419 GP+FV GYSIMF+AAIGLVVRSAIGPVERLLNMLGHQ CA AYA++F MNV LC A VP Sbjct: 357 GPQFVTGYSIMFIAAIGLVVRSAIGPVERLLNMLGHQHACAAAYALAFGMNVALCFAFVP 416 Query: 420 RYGGMG-GASTSLSLTFETILLFYVVRSRLGLHVLAFGRRR 459 RYGG G A+TS+SL FET+LLF++VR +LGLHVLAFG++R Sbjct: 417 RYGGHGAAAATSISLAFETVLLFWIVRRKLGLHVLAFGKKR 457 >ref|YP_319359.1| polysaccharide biosynthesis protein [Nitrobacter winogradskyi Nb-255] gb|ABA06007.1| Polysaccharide biosynthesis protein [Nitrobacter winogradskyi Nb-255] Length = 460 Score = 633 bits (1632), Expect = e-179, Method: Compositional matrix adjust. Identities = 328/464 (70%), Positives = 380/464 (81%), Gaps = 9/464 (1%) Query: 4 METQSATSAPLGR----VARLRDLAARALGGTKEASVTKRLAGMIFAIRVISAAIAYLAQ 59 M A SAP R + RLR + LGG+ EAS+T+RLAG IF IRVISA IAY+AQ Sbjct: 1 MAITDAPSAPAKRLPMLIGRLRAI----LGGSSEASLTRRLAGTIFIIRVISAGIAYVAQ 56 Query: 60 ILLARWMSGSDYGIYVYVWTWVLLLGSTMDFGIAPSAQKIIPEYRARGDLAALRGFLSGG 119 ILLARWM GSDYG+YVYVWTWVLLLGS MDFGI+ SAQ+IIPEY A GD A LRGFLSG Sbjct: 57 ILLARWMGGSDYGVYVYVWTWVLLLGSMMDFGISASAQRIIPEYHASGDNARLRGFLSGS 116 Query: 120 RWVVLATSSMVALLLAGLIHLASPWIDPNAVVPLYIGCLTLPPFVVANTQDGISRAHDWM 179 RW+ +S+++ LA L+ SPWID V+PLYIGCLTLP FVVANTQDGI+R+HDWM Sbjct: 117 RWMTFIVASLISASLAALVTALSPWIDAATVLPLYIGCLTLPAFVVANTQDGIARSHDWM 176 Query: 180 QLGLMPQFIVRQGLIIALTAGALALGLNLGATAAMIASAAAVYIAAIGQMVVLNRRLTAH 239 +LGLMPQFIVRQ LII TAGA LG +L AT AM+AS AAV+IA IGQM+VLNRRL Sbjct: 177 RLGLMPQFIVRQSLIIGFTAGAFVLGFHLSATVAMLASVAAVWIAMIGQMIVLNRRLRTI 236 Query: 240 LGVGEKSYDVKGWFAISLPIMLVESFYLLLGYTDVLMLQQFRSPEEVGIYFAVVKTLALV 299 + G K +D +GW A+SLPI+LVESFYLLL YTDVL+LQQFRS EEVG+YFAVVKTLALV Sbjct: 237 VTPGPKVHDFRGWLAVSLPILLVESFYLLLSYTDVLVLQQFRSSEEVGVYFAVVKTLALV 296 Query: 300 SFVHYAMAATTAHRFAEYNAIGDKDRLSAYVAHAISWTFWPSLLATVALLAFGKPLLWLF 359 SF+HYAM+ATTAHRF EY+A GD++RL+AY+A+AI WTFWPSL AT+ LLAFGKP+LWLF Sbjct: 297 SFIHYAMSATTAHRFTEYHAAGDRERLAAYLAYAIKWTFWPSLAATLLLLAFGKPMLWLF 356 Query: 360 GPKFVDGYSIMFVAAIGLVVRSAIGPVERLLNMLGHQSICATAYAVSFLMNVGLCIALVP 419 GP+FV GYSIMFVAAIGLVVRSAIGPVERLLNMLGHQ CA AYA++F MNV LC A VP Sbjct: 357 GPQFVTGYSIMFVAAIGLVVRSAIGPVERLLNMLGHQHACAAAYALAFGMNVALCFAFVP 416 Query: 420 RYGGMG-GASTSLSLTFETILLFYVVRSRLGLHVLAFGRRRPAS 462 RYGG G A+TS+SLTFET+LLF++VR +LG HVLAFG+ R ++ Sbjct: 417 RYGGHGAAAATSISLTFETVLLFWIVRRKLGFHVLAFGKGRAST 460