BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0040.0007.p (282 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001203230.1| putative signal peptide [Bradyrhizobium sp. ... 409 e-112 ref|YP_578740.1| hypothetical protein Nham_3551 [Nitrobacter ham... 393 e-107 ref|ZP_01045414.1| hypothetical protein NB311A_15782 [Nitrobacte... 391 e-107 ref|YP_001242760.1| hypothetical protein BBta_6967 [Bradyrhizobi... 390 e-107 ref|NP_768131.1| hypothetical protein bll1491 [Bradyrhizobium ja... 390 e-107 >ref|YP_001203230.1| putative signal peptide [Bradyrhizobium sp. ORS 278] emb|CAL74993.1| conserved hypothetical protein; putative signal peptide [Bradyrhizobium sp. ORS 278] Length = 279 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 197/281 (70%), Positives = 235/281 (83%), Gaps = 3/281 (1%) Query: 1 MIVIVPLRAAFGVAALFSVACMATEVRADDASPWQQDTHSAVRLLGLLAGSRTGAVLLGG 60 M +VP +A + A + +A + RA D+SPWQ+D+HSAVRLL AGSR+G VLLGG Sbjct: 1 MSALVPHHSATLLIAAMLSSSLAVDARAQDSSPWQRDSHSAVRLL---AGSRSGPVLLGG 57 Query: 61 IAFQLQDGWKTYWRTPGDSGVPPRFDFSRSDNVEAVTVMWPAPRQFDDGAGGTSLGYKHQ 120 IA QLQ GWKTYWRTPGDSGVPPRFDFS+S+NVEAVTV+WPAP +FDDGAGG SLGY Q Sbjct: 58 IAIQLQPGWKTYWRTPGDSGVPPRFDFSKSENVEAVTVLWPAPTKFDDGAGGHSLGYHDQ 117 Query: 121 VVLPLRIVAKNPDKPLVLRADINYAVCEKLCVPVEAKAELAFASVASTEDTALSEALNAV 180 +VLPLRIV+K+ DKP++LRADI+YAVCEK+C+PV+AKAELAF SVASTEDTALS AL+AV Sbjct: 118 IVLPLRIVSKSADKPMILRADISYAVCEKICIPVDAKAELAFTSVASTEDTALSAALDAV 177 Query: 181 PKPANIGDPIPFSIRDVKRDGKNNVLVDVSAPESRDLSLFVEGPTPDWALPVPKLVEHAP 240 PKPANIGDP P +I DVKRDGK +V+VDV+APE R + L+VEGPTPDW+LP+P + Sbjct: 178 PKPANIGDPNPVTIHDVKRDGKKDVIVDVAAPEGRGVHLYVEGPTPDWSLPIPTARDSGT 237 Query: 241 PGVKRFSFELDGLPPGAKADGAALKLTLVGGDKSYEFNINL 281 PG+ RF+FELDG+PPG K DGAALK TLVG DK+YEFN+NL Sbjct: 238 PGITRFAFELDGVPPGVKPDGAALKFTLVGPDKAYEFNVNL 278 >ref|YP_578740.1| hypothetical protein Nham_3551 [Nitrobacter hamburgensis X14] gb|ABE64280.1| conserved hypothetical protein [Nitrobacter hamburgensis X14] Length = 280 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 194/283 (68%), Positives = 225/283 (79%), Gaps = 4/283 (1%) Query: 1 MIVIVPLRAAFGVAALFSVACMATEVRADDASPWQQDTHSAVRLLGLLAGSRTGAVLLGG 60 MI VPL A GVA ++T A+DASPWQQ +H+AVRLL AGSR+GAVLLGG Sbjct: 1 MITKVPLHAVPGVAVALLACALSTAATAEDASPWQQGSHAAVRLL---AGSRSGAVLLGG 57 Query: 61 IAFQLQDGWKTYWRTPGDSGVPPRFDFSRSDNVEAVTVMWPAPRQFDDGAGGTSLGYKHQ 120 +AFQL+ GWKTYWRTPGDSGVPPRFDFSRSDN++AVTV+WPAP QF DGAGG SLGYK+ Sbjct: 58 VAFQLEPGWKTYWRTPGDSGVPPRFDFSRSDNIDAVTVLWPAPSQFPDGAGGHSLGYKNH 117 Query: 121 VVLPLRIVAKNPDKPLVLRADINYAVCEKLCVPVEAKAELAFASVASTEDTALSEALNAV 180 VVLPLRI A N DKP+ LRA +N+AVC+KLC+P EA EL FASVAS ED+AL+ AL+ V Sbjct: 118 VVLPLRIAATNADKPITLRATVNFAVCDKLCIPAEASMELGFASVASAEDSALAAALDTV 177 Query: 181 PKPANIGDPIPFSIRDVKRDGKNNVLVDV-SAPESRDLSLFVEGPTPDWALPVPKLVEHA 239 PKPA IGDP P +IRDVKR+G + V VDV SA D+SLFVEGPTPDWALP+P + HA Sbjct: 178 PKPARIGDPNPLTIRDVKREGPSTVTVDVASASPKDDVSLFVEGPTPDWALPIPTQLNHA 237 Query: 240 PPGVKRFSFELDGLPPGAKADGAALKLTLVGGDKSYEFNINLN 282 P GVKRF+F+LDGLP +GAALKLTLVGG ++YEFNINL Sbjct: 238 PHGVKRFAFKLDGLPANTSPEGAALKLTLVGGKQAYEFNINLQ 280 >ref|ZP_01045414.1| hypothetical protein NB311A_15782 [Nitrobacter sp. Nb-311A] gb|EAQ36742.1| hypothetical protein NB311A_15782 [Nitrobacter sp. Nb-311A] Length = 280 Score = 391 bits (1004), Expect = e-107, Method: Compositional matrix adjust. Identities = 192/283 (67%), Positives = 227/283 (80%), Gaps = 4/283 (1%) Query: 1 MIVIVPLRAAFGVAALFSVACMATEVRADDASPWQQDTHSAVRLLGLLAGSRTGAVLLGG 60 MI+ VPL A GVA ++T A D+SPWQQ +H+AVRLL AGSR+GAVLLGG Sbjct: 1 MIIKVPLYAVPGVAVALLACALSTPATAQDSSPWQQSSHAAVRLL---AGSRSGAVLLGG 57 Query: 61 IAFQLQDGWKTYWRTPGDSGVPPRFDFSRSDNVEAVTVMWPAPRQFDDGAGGTSLGYKHQ 120 IAFQL+ GWKT+WRTPGDSGVPPRFDFSRS+NV+AVTV+WPAP +F DGAGG +LGYK Q Sbjct: 58 IAFQLEPGWKTFWRTPGDSGVPPRFDFSRSENVDAVTVLWPAPSKFPDGAGGHALGYKEQ 117 Query: 121 VVLPLRIVAKNPDKPLVLRADINYAVCEKLCVPVEAKAELAFASVASTEDTALSEALNAV 180 +VLPLRI A N DKP+ LRA +N+AVC KLC+P EA ELAFASVAS+ED+AL+ AL+ V Sbjct: 118 IVLPLRIAATNADKPITLRATVNFAVCAKLCIPAEASMELAFASVASSEDSALAAALDMV 177 Query: 181 PKPANIGDPIPFSIRDVKRDGKNNVLVDVSAPESRD-LSLFVEGPTPDWALPVPKLVEHA 239 PKPA IGDP P +IRDV+R+ K+ V+VDV+ +D +SLFVEGPTPDWALP+P EHA Sbjct: 178 PKPARIGDPNPLTIRDVRREEKSTVIVDVATSNPKDEVSLFVEGPTPDWALPIPTRHEHA 237 Query: 240 PPGVKRFSFELDGLPPGAKADGAALKLTLVGGDKSYEFNINLN 282 P GVKRFSF+LDGLP A+GAALKLTLVG +YEFNINLN Sbjct: 238 PHGVKRFSFKLDGLPANTNAEGAALKLTLVGDKSAYEFNINLN 280 >ref|YP_001242760.1| hypothetical protein BBta_6967 [Bradyrhizobium sp. BTAi1] gb|ABQ38854.1| putative exported protein of unknown function [Bradyrhizobium sp. BTAi1] Length = 279 Score = 390 bits (1003), Expect = e-107, Method: Compositional matrix adjust. Identities = 190/281 (67%), Positives = 227/281 (80%), Gaps = 3/281 (1%) Query: 1 MIVIVPLRAAFGVAALFSVACMATEVRADDASPWQQDTHSAVRLLGLLAGSRTGAVLLGG 60 M +VP +A + A +C + A D+SPWQ+D HSAVRLL AGSR+G V+LGG Sbjct: 1 MSALVPRPSATLLTAALLWSCASLGGWAQDSSPWQRDGHSAVRLL---AGSRSGPVVLGG 57 Query: 61 IAFQLQDGWKTYWRTPGDSGVPPRFDFSRSDNVEAVTVMWPAPRQFDDGAGGTSLGYKHQ 120 +AFQLQ GWKTYWRTPGDSGVPPRFDFSRS+NV+AVTV+WPAP +FDDGAGG SLGY Q Sbjct: 58 VAFQLQPGWKTYWRTPGDSGVPPRFDFSRSENVDAVTVLWPAPTKFDDGAGGHSLGYHDQ 117 Query: 121 VVLPLRIVAKNPDKPLVLRADINYAVCEKLCVPVEAKAELAFASVASTEDTALSEALNAV 180 VVLPLRIVAK+ DKP+ LRADI+YAVCEK+C+PVEAK ELAF SVASTED +LS AL+ V Sbjct: 118 VVLPLRIVAKSADKPMTLRADISYAVCEKICIPVEAKVELAFTSVASTEDASLSAALDTV 177 Query: 181 PKPANIGDPIPFSIRDVKRDGKNNVLVDVSAPESRDLSLFVEGPTPDWALPVPKLVEHAP 240 PKPAN+GDP PF+IRD+ RDGK +V+VDV AP+ R + L+VEGPTPDW+LP+P + Sbjct: 178 PKPANVGDPNPFTIRDITRDGKKDVIVDVIAPDKRGVHLYVEGPTPDWSLPIPSQRDSGT 237 Query: 241 PGVKRFSFELDGLPPGAKADGAALKLTLVGGDKSYEFNINL 281 PG+ RF+FELDG+PPG K DGA LK TLVG DK+YEFN +L Sbjct: 238 PGIARFAFELDGVPPGVKPDGATLKFTLVGPDKAYEFNASL 278 >ref|NP_768131.1| hypothetical protein bll1491 [Bradyrhizobium japonicum USDA 110] dbj|BAC46756.1| bll1491 [Bradyrhizobium japonicum USDA 110] Length = 280 Score = 390 bits (1003), Expect = e-107, Method: Compositional matrix adjust. Identities = 207/283 (73%), Positives = 234/283 (82%), Gaps = 4/283 (1%) Query: 1 MIVIVPLRAAFGVAALFSVACMATEVRADDASPWQQDTHSAVRLLGLLAGSRTGAVLLGG 60 M+ VPLRAA GVA + +A RADDASPWQ+D HSAVRLL AGSR+GAVLLGG Sbjct: 1 MLTRVPLRAAIGVATTLLASSLALAARADDASPWQRDGHSAVRLL---AGSRSGAVLLGG 57 Query: 61 IAFQLQDGWKTYWRTPGDSGVPPRFDFSRSDNVEAVTVMWPAPRQFDDGAGGTSLGYKHQ 120 IAFQLQ GWKTYWRTPGDSGVPPRFDFS+S+NVEAVT+MWPAP +FDDGAGG S+GY Q Sbjct: 58 IAFQLQPGWKTYWRTPGDSGVPPRFDFSKSENVEAVTIMWPAPLKFDDGAGGHSIGYHDQ 117 Query: 121 VVLPLRIVAKNPDKPLVLRADINYAVCEKLCVPVEAKAELAFASVASTEDTALSEALNAV 180 +VLPLRIVAK DKP+ LRA+INYAVCEKLC+PVEA AEL F SVASTED L AL+ V Sbjct: 118 IVLPLRIVAKAADKPVTLRAEINYAVCEKLCIPVEASAELGFNSVASTEDANLRAALDTV 177 Query: 181 PKPANIGDPIPFSIRDVKRDG-KNNVLVDVSAPESRDLSLFVEGPTPDWALPVPKLVEHA 239 PKPANIGDP P +IRDVKRDG KN V+ V+ ++R ++LFVEGPTPDW+LP+P VE + Sbjct: 178 PKPANIGDPNPLTIRDVKRDGPKNVVVDVVAPADARKVNLFVEGPTPDWSLPIPAPVEPS 237 Query: 240 PPGVKRFSFELDGLPPGAKADGAALKLTLVGGDKSYEFNINLN 282 PPGVKRFSFELDGLPPGAK +GAALK TLVG +KSYEFN NL Sbjct: 238 PPGVKRFSFELDGLPPGAKPEGAALKFTLVGPEKSYEFNTNLE 280