BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0040.0006.p (229 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_779651.1| hypothetical protein RPE_0714 [Rhodopseudomonas... 340 8e-92 ref|YP_571466.1| hypothetical protein RPD_4348 [Rhodopseudomonas... 334 6e-90 ref|ZP_08628314.1| hypothetical protein CSIRO_1388 [Bradyrhizobi... 334 6e-90 ref|YP_488096.1| hypothetical protein RPB_4502 [Rhodopseudomonas... 332 3e-89 ref|YP_530678.1| hypothetical protein RPC_0788 [Rhodopseudomonas... 330 1e-88 >ref|YP_779651.1| hypothetical protein RPE_0714 [Rhodopseudomonas palustris BisA53] gb|ABJ04671.1| protein of unknown function DUF179 [Rhodopseudomonas palustris BisA53] Length = 209 Score = 340 bits (873), Expect = 8e-92, Method: Compositional matrix adjust. Identities = 164/195 (84%), Positives = 182/195 (93%) Query: 35 AAEGGYLDGQMLIAMPVMDDPRFERSVIYMCAHSSEGAMGIIVNRPAGSIDFPGLLVQLD 94 A EGGYLDGQ+L+AMPVM+D RF RSVIY+CAHSSEGAMGIIVNRPAGSI+FP LLVQL+ Sbjct: 15 ATEGGYLDGQLLVAMPVMEDERFARSVIYVCAHSSEGAMGIIVNRPAGSINFPELLVQLE 74 Query: 95 IIEKSDQIQLPENAEMMKVMKGGPVDTGRGFVLHSSDFYIQDATLNIDDGISLTATVDIL 154 II+K+DQI+LPENAE M+V+KGGPV+TGRGFVLHSSDF+I+DATL ID+GI LTATVDIL Sbjct: 75 IIDKADQIKLPENAESMRVLKGGPVETGRGFVLHSSDFFIKDATLPIDEGICLTATVDIL 134 Query: 155 KAIAKGAGPKHAILALGYAGWAPGQLENEIQHNGWLHCDADPELIFGTDVDEKYARALRK 214 KAIAKGAGPKHAILALGYAGWAPGQLENEIQ NGWLHC ADP+LIFG +VDEKY RAL K Sbjct: 135 KAIAKGAGPKHAILALGYAGWAPGQLENEIQDNGWLHCAADPDLIFGGNVDEKYDRALHK 194 Query: 215 IGIEAGMLSNDAGHA 229 IGIE GMLSN+AGHA Sbjct: 195 IGIEPGMLSNEAGHA 209 >ref|YP_571466.1| hypothetical protein RPD_4348 [Rhodopseudomonas palustris BisB5] gb|ABE41565.1| protein of unknown function DUF179 [Rhodopseudomonas palustris BisB5] Length = 237 Score = 334 bits (857), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 163/218 (74%), Positives = 185/218 (84%), Gaps = 1/218 (0%) Query: 12 RPEGKPGKTRKTAAGRRPAVGAHAAEGGYLDGQMLIAMPVMDDPRFERSVIYMCAHSSEG 71 +P+ K R + A R+ +G YLDGQ+LIAMPVM+D RF RSVIY+CAHSSEG Sbjct: 21 KPKSGEAKLR-SGAKRKAGESWSGEQGSYLDGQLLIAMPVMEDERFARSVIYICAHSSEG 79 Query: 72 AMGIIVNRPAGSIDFPGLLVQLDIIEKSDQIQLPENAEMMKVMKGGPVDTGRGFVLHSSD 131 AMGIIVNRPAGSIDFP LLVQLDI+EK +QI LP++AE MKV++GGPV+TGRGFVLHSSD Sbjct: 80 AMGIIVNRPAGSIDFPELLVQLDIVEKPEQIMLPDHAESMKVLRGGPVETGRGFVLHSSD 139 Query: 132 FYIQDATLNIDDGISLTATVDILKAIAKGAGPKHAILALGYAGWAPGQLENEIQHNGWLH 191 F+I+DATL IDDGISLTATVDILKAIA GAGPKHAILALGYAGWAPGQLE EIQ NGWLH Sbjct: 140 FFIKDATLPIDDGISLTATVDILKAIASGAGPKHAILALGYAGWAPGQLETEIQDNGWLH 199 Query: 192 CDADPELIFGTDVDEKYARALRKIGIEAGMLSNDAGHA 229 CDAD +L+FG DV+EKY RAL K+GIE GMLS +AGHA Sbjct: 200 CDADADLVFGDDVEEKYDRALHKLGIEPGMLSTEAGHA 237 >ref|ZP_08628314.1| hypothetical protein CSIRO_1388 [Bradyrhizobiaceae bacterium SG-6C] gb|EGP09223.1| hypothetical protein CSIRO_1388 [Bradyrhizobiaceae bacterium SG-6C] Length = 216 Score = 334 bits (857), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 168/215 (78%), Positives = 184/215 (85%), Gaps = 7/215 (3%) Query: 20 TRKTAAGRRPAVGAHAAEG-----GYLDGQMLIAMPVMDDPRFERSVIYMCAHSSEGAMG 74 TRK +PA G AEG GYLDGQ+LIAMPVMDD RF RSVIYMCAHSSEGAMG Sbjct: 4 TRKKTG--KPAGGPILAEGETSGAGYLDGQLLIAMPVMDDERFARSVIYMCAHSSEGAMG 61 Query: 75 IIVNRPAGSIDFPGLLVQLDIIEKSDQIQLPENAEMMKVMKGGPVDTGRGFVLHSSDFYI 134 IIVNRPAGSIDFP LLVQLDII K+DQI+LP +AE MKV+KGGPVDTGRGFVLHSSDF+I Sbjct: 62 IIVNRPAGSIDFPQLLVQLDIINKADQIKLPGSAEDMKVLKGGPVDTGRGFVLHSSDFFI 121 Query: 135 QDATLNIDDGISLTATVDILKAIAKGAGPKHAILALGYAGWAPGQLENEIQHNGWLHCDA 194 +DATL IDDGI LTAT+DILKAIA G+GPKHA+LALGYAGWAPGQLE+EIQHNGWLHC A Sbjct: 122 KDATLPIDDGICLTATLDILKAIAAGSGPKHALLALGYAGWAPGQLEDEIQHNGWLHCPA 181 Query: 195 DPELIFGTDVDEKYARALRKIGIEAGMLSNDAGHA 229 DP+L+FG D + KY RAL KIGIE MLSN+AGHA Sbjct: 182 DPDLVFGMDAEGKYERALEKIGIELAMLSNEAGHA 216 >ref|YP_488096.1| hypothetical protein RPB_4502 [Rhodopseudomonas palustris HaA2] sp|Q2IRH5.1|Y4502_RHOP2 RecName: Full=UPF0301 protein RPB_4502 gb|ABD09185.1| Protein of unknown function DUF179 [Rhodopseudomonas palustris HaA2] Length = 218 Score = 332 bits (851), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 159/205 (77%), Positives = 181/205 (88%) Query: 25 AGRRPAVGAHAAEGGYLDGQMLIAMPVMDDPRFERSVIYMCAHSSEGAMGIIVNRPAGSI 84 +GR P +G YLDGQ+LIAMPVM+D RF RSVIY+CAHSSEGAMGIIVNRPAGSI Sbjct: 14 SGREPGNAGPIEQGDYLDGQLLIAMPVMEDERFARSVIYICAHSSEGAMGIIVNRPAGSI 73 Query: 85 DFPGLLVQLDIIEKSDQIQLPENAEMMKVMKGGPVDTGRGFVLHSSDFYIQDATLNIDDG 144 DFP LLVQLDI+EK +QI+LP++AE MKV++GGPV+TGRGFVLHSSDF+I+DATL IDDG Sbjct: 74 DFPELLVQLDIVEKPEQIKLPDHAESMKVLRGGPVETGRGFVLHSSDFFIKDATLPIDDG 133 Query: 145 ISLTATVDILKAIAKGAGPKHAILALGYAGWAPGQLENEIQHNGWLHCDADPELIFGTDV 204 ISLTATVDIL+AIA GAGPKHAILALGYAGWAPGQLE EIQ NGWLHCDAD +L+FG D+ Sbjct: 134 ISLTATVDILRAIASGAGPKHAILALGYAGWAPGQLETEIQDNGWLHCDADADLVFGNDI 193 Query: 205 DEKYARALRKIGIEAGMLSNDAGHA 229 +EKY RAL K+GIE GMLS +AGHA Sbjct: 194 EEKYDRALHKLGIEPGMLSAEAGHA 218 >ref|YP_530678.1| hypothetical protein RPC_0788 [Rhodopseudomonas palustris BisB18] sp|Q21B77.1|Y788_RHOPB RecName: Full=UPF0301 protein RPC_0788 gb|ABD86359.1| protein of unknown function DUF179 [Rhodopseudomonas palustris BisB18] Length = 213 Score = 330 bits (845), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 166/224 (74%), Positives = 188/224 (83%), Gaps = 16/224 (7%) Query: 11 MRPEGKPGKTRKT-----AAGRRPAVGAHAAEGGYLDGQMLIAMPVMDDPRFERSVIYMC 65 M P+ K K +T A+GRR YLDGQ+LIAMPVM+D RF RSVIY+C Sbjct: 1 MDPKSKAPKRDETKGADDASGRR-----------YLDGQLLIAMPVMEDERFARSVIYVC 49 Query: 66 AHSSEGAMGIIVNRPAGSIDFPGLLVQLDIIEKSDQIQLPENAEMMKVMKGGPVDTGRGF 125 AHSSEGAMGIIVNRPAGSIDFP LLVQL+II+K+DQI+LPENAE MKV+KGGPV+TGRGF Sbjct: 50 AHSSEGAMGIIVNRPAGSIDFPELLVQLEIIDKADQIKLPENAETMKVLKGGPVETGRGF 109 Query: 126 VLHSSDFYIQDATLNIDDGISLTATVDILKAIAKGAGPKHAILALGYAGWAPGQLENEIQ 185 VLHSSDF+I+DATL ID+GI LTATVDIL+AIA+GAGPKHAILALGYAGWAPGQLE EIQ Sbjct: 110 VLHSSDFFIKDATLPIDEGICLTATVDILRAIARGAGPKHAILALGYAGWAPGQLETEIQ 169 Query: 186 HNGWLHCDADPELIFGTDVDEKYARALRKIGIEAGMLSNDAGHA 229 NGWLHC AD +LIFG D++ KY+RAL KIGIE GMLSN+AGHA Sbjct: 170 GNGWLHCPADADLIFGGDIEAKYSRALHKIGIEPGMLSNEAGHA 213